HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 31-AUG-15 5DHW OBSLTE 28-NOV-18 5DHW 6ISD TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA HPPD COMPLEXED WITH TITLE 2 SULCOTRIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-HYDROXYPHENYLPYRUVIC ACID OXIDASE,HPPDASE; COMPND 5 EC: 1.13.11.27; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: DRG REFERS TO THE ORGANIC COMPOUND SULCOTRIONE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: HPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE, SLOW BINDING INHIBITORS, DRUG KEYWDS 2 DESIGN, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.C.YANG,G.F.YANG REVDAT 3 28-NOV-18 5DHW 1 OBSLTE REVDAT 2 18-OCT-17 5DHW 1 REMARK REVDAT 1 07-SEP-16 5DHW 0 JRNL AUTH W.C.YANG,G.F.YANG JRNL TITL CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA HPPD COMPLEXED JRNL TITL 2 WITH SULCOTRIONE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9729 - 5.6424 1.00 2900 147 0.2353 0.2421 REMARK 3 2 5.6424 - 4.4796 1.00 2751 152 0.1827 0.2228 REMARK 3 3 4.4796 - 3.9137 1.00 2711 150 0.1770 0.2292 REMARK 3 4 3.9137 - 3.5560 1.00 2660 157 0.2064 0.2631 REMARK 3 5 3.5560 - 3.3011 1.00 2678 131 0.2154 0.2848 REMARK 3 6 3.3011 - 3.1066 1.00 2687 126 0.2278 0.2727 REMARK 3 7 3.1066 - 2.9510 1.00 2645 150 0.2174 0.3158 REMARK 3 8 2.9510 - 2.8226 1.00 2645 131 0.2199 0.3076 REMARK 3 9 2.8226 - 2.7139 1.00 2633 157 0.2427 0.3113 REMARK 3 10 2.7139 - 2.6203 0.98 2595 127 0.2868 0.4038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5774 REMARK 3 ANGLE : 1.345 7800 REMARK 3 CHIRALITY : 0.081 845 REMARK 3 PLANARITY : 0.008 1016 REMARK 3 DIHEDRAL : 14.949 2055 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000212180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : PHENIX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28350 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15200 REMARK 200 FOR THE DATA SET : 11.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.15200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.43 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.16K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.38500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.96500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.19250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.96500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.57750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.96500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.96500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.19250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.96500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.96500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 147.57750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 GLN A 12 REMARK 465 ASN A 13 REMARK 465 HIS A 14 REMARK 465 ASP A 15 REMARK 465 ASP A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 PHE A 24 REMARK 465 LYS A 25 REMARK 465 LEU A 26 REMARK 465 VAL A 27 REMARK 465 GLY A 28 REMARK 465 PHE A 29 REMARK 465 SER A 108 REMARK 465 ALA A 109 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 ILE A 112 REMARK 465 LYS A 113 REMARK 465 PRO A 114 REMARK 465 ALA A 194 REMARK 465 GLU A 195 REMARK 465 ASP A 196 REMARK 465 THR A 197 REMARK 465 GLU A 198 REMARK 465 LYS A 199 REMARK 465 SER A 200 REMARK 465 GLU A 201 REMARK 465 ALA A 212 REMARK 465 SER A 213 REMARK 465 SER A 214 REMARK 465 THR A 254 REMARK 465 ALA A 255 REMARK 465 ASP A 256 REMARK 465 ASP A 257 REMARK 465 VAL A 258 REMARK 465 GLY A 259 REMARK 465 THR A 260 REMARK 465 ALA A 261 REMARK 465 GLU A 262 REMARK 465 THR A 288 REMARK 465 LYS A 289 REMARK 465 LYS A 404 REMARK 465 ASP A 405 REMARK 465 GLU A 406 REMARK 465 GLU A 407 REMARK 465 GLY A 408 REMARK 465 LYS A 409 REMARK 465 ALA A 410 REMARK 465 GLU A 435 REMARK 465 LYS A 436 REMARK 465 THR A 437 REMARK 465 LEU A 438 REMARK 465 GLU A 439 REMARK 465 ALA A 440 REMARK 465 LYS A 441 REMARK 465 GLN A 442 REMARK 465 LEU A 443 REMARK 465 VAL A 444 REMARK 465 GLY A 445 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 HIS B 3 REMARK 465 GLN B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 465 SER B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 11 REMARK 465 GLN B 12 REMARK 465 ASN B 13 REMARK 465 HIS B 14 REMARK 465 ASP B 15 REMARK 465 ASP B 16 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 PRO B 22 REMARK 465 GLY B 23 REMARK 465 PHE B 24 REMARK 465 LYS B 25 REMARK 465 LEU B 26 REMARK 465 VAL B 27 REMARK 465 GLY B 28 REMARK 465 PHE B 29 REMARK 465 LEU B 107 REMARK 465 SER B 108 REMARK 465 ALA B 109 REMARK 465 GLY B 110 REMARK 465 GLU B 111 REMARK 465 ILE B 112 REMARK 465 LYS B 113 REMARK 465 ALA B 194 REMARK 465 GLU B 195 REMARK 465 ASP B 196 REMARK 465 THR B 197 REMARK 465 GLU B 198 REMARK 465 LYS B 199 REMARK 465 SER B 200 REMARK 465 GLU B 201 REMARK 465 ASP B 211 REMARK 465 ALA B 212 REMARK 465 SER B 213 REMARK 465 SER B 214 REMARK 465 THR B 254 REMARK 465 ALA B 255 REMARK 465 ASP B 256 REMARK 465 ASP B 257 REMARK 465 VAL B 258 REMARK 465 GLY B 259 REMARK 465 THR B 260 REMARK 465 ALA B 261 REMARK 465 THR B 288 REMARK 465 LYS B 289 REMARK 465 LYS B 404 REMARK 465 ASP B 405 REMARK 465 GLU B 406 REMARK 465 GLU B 407 REMARK 465 GLY B 408 REMARK 465 LYS B 409 REMARK 465 ALA B 410 REMARK 465 THR B 437 REMARK 465 LEU B 438 REMARK 465 GLU B 439 REMARK 465 ALA B 440 REMARK 465 LYS B 441 REMARK 465 GLN B 442 REMARK 465 LEU B 443 REMARK 465 VAL B 444 REMARK 465 GLY B 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 33 CB CG1 CG2 REMARK 470 LYS A 45 CE NZ REMARK 470 LEU A 107 CG CD1 CD2 REMARK 470 THR A 115 OG1 CG2 REMARK 470 GLU A 147 CD OE1 OE2 REMARK 470 ASP A 148 CG OD1 OD2 REMARK 470 GLU A 172 CB CG CD OE1 OE2 REMARK 470 LYS A 193 CB CG CD CE NZ REMARK 470 GLU A 207 CD OE1 OE2 REMARK 470 ARG A 208 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 210 CB CG CD OE1 OE2 REMARK 470 ARG A 290 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 293 CD OE1 NE2 REMARK 470 LYS A 347 CB CG CD CE NZ REMARK 470 LYS A 348 CB CG CD CE NZ REMARK 470 ASP A 356 CG OD1 OD2 REMARK 470 ASP A 357 CG OD1 OD2 REMARK 470 LYS A 360 CE NZ REMARK 470 LYS A 421 CB CG CD CE NZ REMARK 470 GLU A 426 CD OE1 OE2 REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 ARG B 46 CZ NH1 NH2 REMARK 470 THR B 115 OG1 CG2 REMARK 470 HIS B 125 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 147 CD OE1 OE2 REMARK 470 ASP B 148 CG OD1 OD2 REMARK 470 GLU B 172 CB CG CD OE1 OE2 REMARK 470 LYS B 193 CB CG CD CE NZ REMARK 470 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 210 CB CG CD OE1 OE2 REMARK 470 PHE B 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 PHE B 253 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 262 CG CD OE1 OE2 REMARK 470 SER B 263 OG REMARK 470 HIS B 286 CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 290 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 291 CD CE NZ REMARK 470 GLN B 293 CD OE1 NE2 REMARK 470 LYS B 347 CB CG CD CE NZ REMARK 470 LYS B 348 CB CG CD CE NZ REMARK 470 ASP B 357 CG OD1 OD2 REMARK 470 LYS B 360 NZ REMARK 470 GLN B 374 CB CG CD OE1 NE2 REMARK 470 MET B 403 CE REMARK 470 TYR B 411 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 421 CB CG CD CE NZ REMARK 470 LYS B 429 NZ REMARK 470 GLU B 432 OE1 OE2 REMARK 470 GLU B 433 CD OE1 OE2 REMARK 470 LYS B 436 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 302 OG SER B 104 2.15 REMARK 500 OG SER A 104 OE2 GLU B 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 62.29 35.44 REMARK 500 LYS A 45 -81.42 -112.30 REMARK 500 HIS A 48 -61.38 -96.07 REMARK 500 ALA A 173 -61.46 -137.70 REMARK 500 LEU A 181 -66.55 -102.49 REMARK 500 ASP A 218 111.41 -161.18 REMARK 500 ARG A 349 -37.87 -140.02 REMARK 500 ASP A 372 -158.98 -143.88 REMARK 500 THR A 390 -97.02 -122.37 REMARK 500 CYS A 416 104.95 -58.17 REMARK 500 LYS B 38 62.17 35.70 REMARK 500 LYS B 45 -88.19 -108.70 REMARK 500 HIS B 48 -62.49 -94.91 REMARK 500 ASP B 77 -169.17 -160.90 REMARK 500 ALA B 173 -64.13 -135.91 REMARK 500 LEU B 181 -64.19 -101.33 REMARK 500 TYR B 192 -166.30 -122.10 REMARK 500 ASP B 218 109.44 -161.15 REMARK 500 GLU B 252 -146.48 -111.42 REMARK 500 ARG B 349 -36.80 -142.77 REMARK 500 THR B 390 -97.75 -120.75 REMARK 500 CYS B 416 107.33 -56.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 226 NE2 REMARK 620 2 HIS A 308 NE2 111.2 REMARK 620 3 GLU A 394 OE2 94.8 88.7 REMARK 620 4 5BQ A 600 OAB 94.6 106.1 158.1 REMARK 620 5 5BQ A 600 OAD 163.8 72.9 101.0 69.4 REMARK 620 6 HOH A 705 O 63.6 169.3 82.6 84.0 114.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 226 NE2 REMARK 620 2 HIS B 308 NE2 103.0 REMARK 620 3 GLU B 394 OE2 105.3 80.1 REMARK 620 4 5BQ B 600 OAB 98.9 102.9 154.3 REMARK 620 5 5BQ B 600 OAD 164.7 72.4 88.6 68.6 REMARK 620 6 HOH B 701 O 92.1 164.8 94.9 75.5 93.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5BQ A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5BQ B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T47 RELATED DB: PDB REMARK 900 STRUCTURE OF THE FERROUS FORM OF (4-HYDROXYPHENYL)PYRUVATE REMARK 900 DIOXYGENASE FROM STREPTOMYCES AVERMITILIS IN COMPLEX WITH THE REMARK 900 THERAPEUTIC HERBICIDE, NTBC. DBREF 5DHW A 1 445 UNP P93836 HPPD_ARATH 1 445 DBREF 5DHW B 1 445 UNP P93836 HPPD_ARATH 1 445 SEQRES 1 A 445 MET GLY HIS GLN ASN ALA ALA VAL SER GLU ASN GLN ASN SEQRES 2 A 445 HIS ASP ASP GLY ALA ALA SER SER PRO GLY PHE LYS LEU SEQRES 3 A 445 VAL GLY PHE SER LYS PHE VAL ARG LYS ASN PRO LYS SER SEQRES 4 A 445 ASP LYS PHE LYS VAL LYS ARG PHE HIS HIS ILE GLU PHE SEQRES 5 A 445 TRP CYS GLY ASP ALA THR ASN VAL ALA ARG ARG PHE SER SEQRES 6 A 445 TRP GLY LEU GLY MET ARG PHE SER ALA LYS SER ASP LEU SEQRES 7 A 445 SER THR GLY ASN MET VAL HIS ALA SER TYR LEU LEU THR SEQRES 8 A 445 SER GLY ASP LEU ARG PHE LEU PHE THR ALA PRO TYR SER SEQRES 9 A 445 PRO SER LEU SER ALA GLY GLU ILE LYS PRO THR THR THR SEQRES 10 A 445 ALA SER ILE PRO SER PHE ASP HIS GLY SER CYS ARG SER SEQRES 11 A 445 PHE PHE SER SER HIS GLY LEU GLY VAL ARG ALA VAL ALA SEQRES 12 A 445 ILE GLU VAL GLU ASP ALA GLU SER ALA PHE SER ILE SER SEQRES 13 A 445 VAL ALA ASN GLY ALA ILE PRO SER SER PRO PRO ILE VAL SEQRES 14 A 445 LEU ASN GLU ALA VAL THR ILE ALA GLU VAL LYS LEU TYR SEQRES 15 A 445 GLY ASP VAL VAL LEU ARG TYR VAL SER TYR LYS ALA GLU SEQRES 16 A 445 ASP THR GLU LYS SER GLU PHE LEU PRO GLY PHE GLU ARG SEQRES 17 A 445 VAL GLU ASP ALA SER SER PHE PRO LEU ASP TYR GLY ILE SEQRES 18 A 445 ARG ARG LEU ASP HIS ALA VAL GLY ASN VAL PRO GLU LEU SEQRES 19 A 445 GLY PRO ALA LEU THR TYR VAL ALA GLY PHE THR GLY PHE SEQRES 20 A 445 HIS GLN PHE ALA GLU PHE THR ALA ASP ASP VAL GLY THR SEQRES 21 A 445 ALA GLU SER GLY LEU ASN SER ALA VAL LEU ALA SER ASN SEQRES 22 A 445 ASP GLU MET VAL LEU LEU PRO ILE ASN GLU PRO VAL HIS SEQRES 23 A 445 GLY THR LYS ARG LYS SER GLN ILE GLN THR TYR LEU GLU SEQRES 24 A 445 HIS ASN GLU GLY ALA GLY LEU GLN HIS LEU ALA LEU MET SEQRES 25 A 445 SER GLU ASP ILE PHE ARG THR LEU ARG GLU MET ARG LYS SEQRES 26 A 445 ARG SER SER ILE GLY GLY PHE ASP PHE MET PRO SER PRO SEQRES 27 A 445 PRO PRO THR TYR TYR GLN ASN LEU LYS LYS ARG VAL GLY SEQRES 28 A 445 ASP VAL LEU SER ASP ASP GLN ILE LYS GLU CYS GLU GLU SEQRES 29 A 445 LEU GLY ILE LEU VAL ASP ARG ASP ASP GLN GLY THR LEU SEQRES 30 A 445 LEU GLN ILE PHE THR LYS PRO LEU GLY ASP ARG PRO THR SEQRES 31 A 445 ILE PHE ILE GLU ILE ILE GLN ARG VAL GLY CYS MET MET SEQRES 32 A 445 LYS ASP GLU GLU GLY LYS ALA TYR GLN SER GLY GLY CYS SEQRES 33 A 445 GLY GLY PHE GLY LYS GLY ASN PHE SER GLU LEU PHE LYS SEQRES 34 A 445 SER ILE GLU GLU TYR GLU LYS THR LEU GLU ALA LYS GLN SEQRES 35 A 445 LEU VAL GLY SEQRES 1 B 445 MET GLY HIS GLN ASN ALA ALA VAL SER GLU ASN GLN ASN SEQRES 2 B 445 HIS ASP ASP GLY ALA ALA SER SER PRO GLY PHE LYS LEU SEQRES 3 B 445 VAL GLY PHE SER LYS PHE VAL ARG LYS ASN PRO LYS SER SEQRES 4 B 445 ASP LYS PHE LYS VAL LYS ARG PHE HIS HIS ILE GLU PHE SEQRES 5 B 445 TRP CYS GLY ASP ALA THR ASN VAL ALA ARG ARG PHE SER SEQRES 6 B 445 TRP GLY LEU GLY MET ARG PHE SER ALA LYS SER ASP LEU SEQRES 7 B 445 SER THR GLY ASN MET VAL HIS ALA SER TYR LEU LEU THR SEQRES 8 B 445 SER GLY ASP LEU ARG PHE LEU PHE THR ALA PRO TYR SER SEQRES 9 B 445 PRO SER LEU SER ALA GLY GLU ILE LYS PRO THR THR THR SEQRES 10 B 445 ALA SER ILE PRO SER PHE ASP HIS GLY SER CYS ARG SER SEQRES 11 B 445 PHE PHE SER SER HIS GLY LEU GLY VAL ARG ALA VAL ALA SEQRES 12 B 445 ILE GLU VAL GLU ASP ALA GLU SER ALA PHE SER ILE SER SEQRES 13 B 445 VAL ALA ASN GLY ALA ILE PRO SER SER PRO PRO ILE VAL SEQRES 14 B 445 LEU ASN GLU ALA VAL THR ILE ALA GLU VAL LYS LEU TYR SEQRES 15 B 445 GLY ASP VAL VAL LEU ARG TYR VAL SER TYR LYS ALA GLU SEQRES 16 B 445 ASP THR GLU LYS SER GLU PHE LEU PRO GLY PHE GLU ARG SEQRES 17 B 445 VAL GLU ASP ALA SER SER PHE PRO LEU ASP TYR GLY ILE SEQRES 18 B 445 ARG ARG LEU ASP HIS ALA VAL GLY ASN VAL PRO GLU LEU SEQRES 19 B 445 GLY PRO ALA LEU THR TYR VAL ALA GLY PHE THR GLY PHE SEQRES 20 B 445 HIS GLN PHE ALA GLU PHE THR ALA ASP ASP VAL GLY THR SEQRES 21 B 445 ALA GLU SER GLY LEU ASN SER ALA VAL LEU ALA SER ASN SEQRES 22 B 445 ASP GLU MET VAL LEU LEU PRO ILE ASN GLU PRO VAL HIS SEQRES 23 B 445 GLY THR LYS ARG LYS SER GLN ILE GLN THR TYR LEU GLU SEQRES 24 B 445 HIS ASN GLU GLY ALA GLY LEU GLN HIS LEU ALA LEU MET SEQRES 25 B 445 SER GLU ASP ILE PHE ARG THR LEU ARG GLU MET ARG LYS SEQRES 26 B 445 ARG SER SER ILE GLY GLY PHE ASP PHE MET PRO SER PRO SEQRES 27 B 445 PRO PRO THR TYR TYR GLN ASN LEU LYS LYS ARG VAL GLY SEQRES 28 B 445 ASP VAL LEU SER ASP ASP GLN ILE LYS GLU CYS GLU GLU SEQRES 29 B 445 LEU GLY ILE LEU VAL ASP ARG ASP ASP GLN GLY THR LEU SEQRES 30 B 445 LEU GLN ILE PHE THR LYS PRO LEU GLY ASP ARG PRO THR SEQRES 31 B 445 ILE PHE ILE GLU ILE ILE GLN ARG VAL GLY CYS MET MET SEQRES 32 B 445 LYS ASP GLU GLU GLY LYS ALA TYR GLN SER GLY GLY CYS SEQRES 33 B 445 GLY GLY PHE GLY LYS GLY ASN PHE SER GLU LEU PHE LYS SEQRES 34 B 445 SER ILE GLU GLU TYR GLU LYS THR LEU GLU ALA LYS GLN SEQRES 35 B 445 LEU VAL GLY HET 5BQ A 600 21 HET FE A 601 1 HET 5BQ B 600 21 HET FE B 601 1 HETNAM 5BQ 2-[2-CHLORO-4-(METHYLSULFONYL)BENZOYL]CYCLOHEXANE-1,3- HETNAM 2 5BQ DIONE HETNAM FE FE (III) ION HETSYN 5BQ SULCOTRIONE FORMUL 3 5BQ 2(C14 H13 CL O5 S) FORMUL 4 FE 2(FE 3+) FORMUL 7 HOH *67(H2 O) HELIX 1 AA1 ASP A 56 GLY A 69 1 14 HELIX 2 AA2 ASP A 77 GLY A 81 5 5 HELIX 3 AA3 ASP A 124 GLY A 136 1 13 HELIX 4 AA4 ASP A 148 ASN A 159 1 12 HELIX 5 AA5 GLU A 233 GLY A 246 1 14 HELIX 6 AA6 SER A 292 GLU A 302 1 11 HELIX 7 AA7 ASP A 315 LYS A 325 1 11 HELIX 8 AA8 ARG A 326 GLY A 330 5 5 HELIX 9 AA9 PRO A 339 ASN A 345 1 7 HELIX 10 AB1 SER A 355 GLY A 366 1 12 HELIX 11 AB2 GLY A 422 GLU A 433 1 12 HELIX 12 AB3 ASP B 56 GLY B 69 1 14 HELIX 13 AB4 ASP B 77 GLY B 81 5 5 HELIX 14 AB5 ASP B 124 GLY B 136 1 13 HELIX 15 AB6 ASP B 148 ASN B 159 1 12 HELIX 16 AB7 GLU B 233 GLY B 246 1 14 HELIX 17 AB8 SER B 292 ASN B 301 1 10 HELIX 18 AB9 ASP B 315 LYS B 325 1 11 HELIX 19 AC1 ARG B 326 GLY B 330 5 5 HELIX 20 AC2 PRO B 339 ASN B 345 1 7 HELIX 21 AC3 SER B 355 GLY B 366 1 12 HELIX 22 AC4 GLY B 422 LYS B 436 1 15 SHEET 1 AA1 9 PRO A 163 LEU A 170 0 SHEET 2 AA1 9 VAL A 174 TYR A 182 -1 O GLU A 178 N SER A 165 SHEET 3 AA1 9 VAL A 185 SER A 191 -1 O TYR A 189 N ALA A 177 SHEET 4 AA1 9 GLY A 138 VAL A 146 1 N VAL A 142 O ARG A 188 SHEET 5 AA1 9 VAL A 44 TRP A 53 -1 N HIS A 48 O ALA A 143 SHEET 6 AA1 9 LEU A 95 PRO A 102 1 O LEU A 98 N PHE A 52 SHEET 7 AA1 9 HIS A 85 SER A 92 -1 N LEU A 90 O PHE A 97 SHEET 8 AA1 9 ARG A 71 SER A 76 -1 N SER A 73 O LEU A 89 SHEET 9 AA1 9 GLU A 207 ARG A 208 -1 O GLU A 207 N LYS A 75 SHEET 1 AA2 8 HIS A 248 PHE A 250 0 SHEET 2 AA2 8 LEU A 265 ALA A 271 -1 O VAL A 269 N PHE A 250 SHEET 3 AA2 8 LEU A 278 PRO A 284 -1 O LEU A 279 N LEU A 270 SHEET 4 AA2 8 ILE A 221 ASN A 230 1 N GLY A 229 O ASN A 282 SHEET 5 AA2 8 GLY A 305 SER A 313 -1 O GLY A 305 N ASN A 230 SHEET 6 AA2 8 PHE A 392 GLY A 400 1 O GLU A 394 N LEU A 311 SHEET 7 AA2 8 GLY A 375 PHE A 381 -1 N THR A 376 O VAL A 399 SHEET 8 AA2 8 LEU A 368 ARG A 371 -1 N LEU A 368 O GLN A 379 SHEET 1 AA3 9 PRO B 163 LEU B 170 0 SHEET 2 AA3 9 VAL B 174 LYS B 180 -1 O GLU B 178 N SER B 165 SHEET 3 AA3 9 VAL B 186 SER B 191 -1 O TYR B 189 N ALA B 177 SHEET 4 AA3 9 GLY B 138 VAL B 146 1 N VAL B 142 O ARG B 188 SHEET 5 AA3 9 VAL B 44 TRP B 53 -1 N HIS B 48 O ALA B 143 SHEET 6 AA3 9 LEU B 95 PRO B 102 1 O LEU B 98 N PHE B 52 SHEET 7 AA3 9 HIS B 85 SER B 92 -1 N LEU B 90 O PHE B 97 SHEET 8 AA3 9 ARG B 71 SER B 76 -1 N SER B 73 O LEU B 89 SHEET 9 AA3 9 GLU B 207 ARG B 208 -1 O GLU B 207 N LYS B 75 SHEET 1 AA4 8 HIS B 248 PHE B 250 0 SHEET 2 AA4 8 LEU B 265 ALA B 271 -1 O VAL B 269 N PHE B 250 SHEET 3 AA4 8 LEU B 278 PRO B 284 -1 O LEU B 279 N LEU B 270 SHEET 4 AA4 8 ILE B 221 ASN B 230 1 N GLY B 229 O ASN B 282 SHEET 5 AA4 8 GLY B 305 SER B 313 -1 O GLN B 307 N VAL B 228 SHEET 6 AA4 8 PHE B 392 GLY B 400 1 O ILE B 396 N SER B 313 SHEET 7 AA4 8 GLY B 375 PHE B 381 -1 N THR B 376 O VAL B 399 SHEET 8 AA4 8 LEU B 368 ARG B 371 -1 N ASP B 370 O LEU B 377 SSBOND 1 CYS A 401 CYS A 416 1555 1555 2.06 SSBOND 2 CYS B 401 CYS B 416 1555 1555 2.07 LINK NE2 HIS A 226 FE FE A 601 1555 1555 2.64 LINK NE2 HIS A 308 FE FE A 601 1555 1555 2.41 LINK OE2 GLU A 394 FE FE A 601 1555 1555 1.92 LINK NE2 HIS B 226 FE FE B 601 1555 1555 2.27 LINK NE2 HIS B 308 FE FE B 601 1555 1555 2.50 LINK OE2 GLU B 394 FE FE B 601 1555 1555 1.98 LINK OAB 5BQ A 600 FE FE A 601 1555 1555 1.85 LINK OAD 5BQ A 600 FE FE A 601 1555 1555 2.51 LINK FE FE A 601 O HOH A 705 1555 1555 2.09 LINK OAB 5BQ B 600 FE FE B 601 1555 1555 1.71 LINK OAD 5BQ B 600 FE FE B 601 1555 1555 2.51 LINK FE FE B 601 O HOH B 701 1555 1555 2.13 SITE 1 AC1 12 HIS A 226 PRO A 280 ASN A 282 HIS A 308 SITE 2 AC1 12 PHE A 381 GLU A 394 PHE A 419 GLY A 420 SITE 3 AC1 12 ASN A 423 PHE A 424 FE A 601 HOH A 705 SITE 1 AC2 5 HIS A 226 HIS A 308 GLU A 394 5BQ A 600 SITE 2 AC2 5 HOH A 705 SITE 1 AC3 12 HIS B 226 HIS B 308 LEU B 368 PHE B 381 SITE 2 AC3 12 PHE B 392 GLU B 394 PHE B 419 GLY B 420 SITE 3 AC3 12 ASN B 423 PHE B 424 FE B 601 HOH B 701 SITE 1 AC4 5 HIS B 226 HIS B 308 GLU B 394 5BQ B 600 SITE 2 AC4 5 HOH B 701 CRYST1 95.930 95.930 196.770 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005082 0.00000