HEADER TRANSCRIPTION 31-AUG-15 5DI7 TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH AN METHYL-SUBSTITUTED A-CD RING ESTROGEN DERIVATIVE (1S,3AR,5S, TITLE 3 7AS)-5-(4-HYDROXY-2-METHYLPHENYL)-7A-METHYLOCTAHYDRO-1H-INDEN-1-OL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DI7 1 HEADER REMARK REVDAT 1 04-MAY-16 5DI7 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 23835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6975 - 5.3986 1.00 1646 143 0.1878 0.2063 REMARK 3 2 5.3986 - 4.2860 1.00 1604 149 0.1612 0.1858 REMARK 3 3 4.2860 - 3.7445 1.00 1602 145 0.1458 0.1730 REMARK 3 4 3.7445 - 3.4022 1.00 1593 148 0.1607 0.2145 REMARK 3 5 3.4022 - 3.1584 0.99 1595 141 0.1867 0.2135 REMARK 3 6 3.1584 - 2.9722 0.99 1591 144 0.1790 0.2273 REMARK 3 7 2.9722 - 2.8234 0.99 1578 143 0.1765 0.1911 REMARK 3 8 2.8234 - 2.7005 0.99 1577 148 0.1918 0.2409 REMARK 3 9 2.7005 - 2.5966 0.99 1570 137 0.1827 0.2293 REMARK 3 10 2.5966 - 2.5070 0.97 1564 133 0.1886 0.2375 REMARK 3 11 2.5070 - 2.4286 0.96 1518 132 0.1784 0.2684 REMARK 3 12 2.4286 - 2.3592 0.96 1522 141 0.1868 0.2402 REMARK 3 13 2.3592 - 2.2971 0.95 1534 135 0.1913 0.2350 REMARK 3 14 2.2971 - 2.2410 0.87 1381 121 0.2081 0.2967 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.41660 REMARK 3 B22 (A**2) : 7.59800 REMARK 3 B33 (A**2) : -5.18140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.49390 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4093 REMARK 3 ANGLE : 0.514 5543 REMARK 3 CHIRALITY : 0.038 660 REMARK 3 PLANARITY : 0.001 686 REMARK 3 DIHEDRAL : 12.766 1501 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 305:461) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3947 -1.4429 24.7554 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.1519 REMARK 3 T33: 0.1066 T12: 0.0068 REMARK 3 T13: 0.0076 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.3698 L22: 2.3831 REMARK 3 L33: 1.9786 L12: 0.4244 REMARK 3 L13: -0.3288 L23: 0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: -0.2424 S13: -0.0093 REMARK 3 S21: 0.1666 S22: -0.0458 S23: 0.0616 REMARK 3 S31: -0.0392 S32: 0.0882 S33: -0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 465:477) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1922 19.9431 15.9954 REMARK 3 T TENSOR REMARK 3 T11: 0.5490 T22: 0.3078 REMARK 3 T33: 0.4777 T12: -0.0590 REMARK 3 T13: 0.1147 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.9721 L22: 5.3561 REMARK 3 L33: 6.0667 L12: -3.9657 REMARK 3 L13: 4.2060 L23: -5.6895 REMARK 3 S TENSOR REMARK 3 S11: -0.4282 S12: 0.1621 S13: 0.2208 REMARK 3 S21: 0.2244 S22: 0.1732 S23: -0.3568 REMARK 3 S31: -0.5751 S32: 0.1434 S33: 0.1685 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 478:548) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6159 0.3946 17.7533 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1678 REMARK 3 T33: 0.1444 T12: 0.0177 REMARK 3 T13: -0.0080 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.6200 L22: 0.9401 REMARK 3 L33: 1.0078 L12: 0.3038 REMARK 3 L13: -0.9312 L23: -0.2038 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: -0.0416 S13: 0.0740 REMARK 3 S21: 0.0208 S22: -0.0487 S23: 0.0470 REMARK 3 S31: -0.0444 S32: 0.0248 S33: -0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 305:462) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5430 2.2551 -4.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.1724 REMARK 3 T33: 0.1338 T12: -0.0184 REMARK 3 T13: 0.0388 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.3583 L22: 2.0372 REMARK 3 L33: 2.4645 L12: 0.0999 REMARK 3 L13: 0.6332 L23: 0.1573 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: 0.1783 S13: -0.0204 REMARK 3 S21: -0.2554 S22: -0.0261 S23: -0.0150 REMARK 3 S31: -0.1343 S32: 0.0709 S33: 0.1093 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 463:470) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6648 -23.8104 9.9227 REMARK 3 T TENSOR REMARK 3 T11: 0.5166 T22: 0.4835 REMARK 3 T33: 0.6398 T12: 0.0776 REMARK 3 T13: 0.0913 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 2.2618 L22: 2.7564 REMARK 3 L33: 3.6153 L12: -0.7636 REMARK 3 L13: 1.8402 L23: 0.8773 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: 0.1872 S13: -0.0340 REMARK 3 S21: 0.0624 S22: -0.0849 S23: -0.4496 REMARK 3 S31: -0.2439 S32: 0.4750 S33: 0.1636 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 471:549) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1331 -1.2970 3.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1780 REMARK 3 T33: 0.1542 T12: 0.0062 REMARK 3 T13: 0.0272 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.4630 L22: 1.6885 REMARK 3 L33: 1.8725 L12: 0.0294 REMARK 3 L13: -0.0128 L23: 0.2574 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0834 S13: -0.1392 REMARK 3 S21: -0.0694 S22: -0.0749 S23: 0.0173 REMARK 3 S31: 0.0566 S32: -0.0404 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24336 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.19600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2QA8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.64900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 466 CG CD1 CD2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 SER A 468 OG REMARK 470 LEU A 469 CG CD1 CD2 REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 462 CG CD1 CD2 REMARK 470 SER B 463 OG REMARK 470 SER B 464 OG REMARK 470 LEU B 466 CG CD1 CD2 REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 LEU B 469 CG CD1 CD2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 549 CG CD1 CD2 REMARK 470 HIS C 687 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 687 CG ND1 CD2 CE1 NE2 REMARK 470 ASP D 696 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 785 O HOH B 794 1.87 REMARK 500 OH TYR B 331 O HOH B 701 1.90 REMARK 500 O HOH A 764 O HOH A 801 1.92 REMARK 500 O HOH B 750 O HOH B 779 2.03 REMARK 500 O HOH A 715 O HOH A 750 2.07 REMARK 500 O HOH B 778 O HOH B 783 2.10 REMARK 500 O HOH A 767 O HOH A 787 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 797 O HOH B 793 1556 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 306 -39.74 85.78 REMARK 500 LEU A 466 -82.72 168.67 REMARK 500 LYS A 467 67.99 167.26 REMARK 500 SER A 468 -78.90 66.71 REMARK 500 LEU B 306 -62.60 79.71 REMARK 500 TYR B 331 126.04 -38.40 REMARK 500 SER B 463 -153.16 -76.29 REMARK 500 SER B 464 173.15 60.93 REMARK 500 THR B 465 138.20 59.77 REMARK 500 ARG B 548 43.20 39.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5CQ A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5CQ B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DL4 RELATED DB: PDB REMARK 900 RELATED ID: 5DKS RELATED DB: PDB REMARK 900 RELATED ID: 5DKG RELATED DB: PDB REMARK 900 RELATED ID: 5DKE RELATED DB: PDB REMARK 900 RELATED ID: 5DKB RELATED DB: PDB REMARK 900 RELATED ID: 5DK9 RELATED DB: PDB REMARK 900 RELATED ID: 5DIG RELATED DB: PDB REMARK 900 RELATED ID: 5DIE RELATED DB: PDB REMARK 900 RELATED ID: 5DID RELATED DB: PDB DBREF 5DI7 A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DI7 B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DI7 C 686 699 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 5DI7 D 686 699 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 5DI7 SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DI7 SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5CQ A 601 19 HET 5CQ B 601 19 HETNAM 5CQ (1S,3AR,5S,7AS)-5-(4-HYDROXY-2-METHYLPHENYL)-7A- HETNAM 2 5CQ METHYLOCTAHYDRO-1H-INDEN-1-OL FORMUL 5 5CQ 2(C17 H24 O2) FORMUL 7 HOH *203(H2 O) HELIX 1 AA1 THR A 311 GLU A 323 1 13 HELIX 2 AA2 SER A 338 LYS A 362 1 25 HELIX 3 AA3 GLY A 366 LEU A 370 5 5 HELIX 4 AA4 THR A 371 SER A 395 1 25 HELIX 5 AA5 ARG A 412 LYS A 416 1 5 HELIX 6 AA6 MET A 421 ASN A 439 1 19 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 GLY A 457 PHE A 461 5 5 HELIX 9 AA9 SER A 468 ALA A 493 1 26 HELIX 10 AB1 THR A 496 LYS A 531 1 36 HELIX 11 AB2 SER A 537 ALA A 546 1 10 HELIX 12 AB3 THR B 311 GLU B 323 1 13 HELIX 13 AB4 SER B 338 LYS B 362 1 25 HELIX 14 AB5 GLY B 366 LEU B 370 5 5 HELIX 15 AB6 THR B 371 SER B 395 1 25 HELIX 16 AB7 ASN B 413 VAL B 418 5 6 HELIX 17 AB8 MET B 421 ASN B 439 1 19 HELIX 18 AB9 GLN B 441 SER B 456 1 16 HELIX 19 AC1 GLY B 457 PHE B 461 5 5 HELIX 20 AC2 THR B 465 ALA B 493 1 29 HELIX 21 AC3 THR B 496 LYS B 531 1 36 HELIX 22 AC4 SER B 537 ALA B 546 1 10 HELIX 23 AC5 LYS C 688 ASP C 696 1 9 HELIX 24 AC6 LYS D 688 ASP D 696 1 9 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 CISPEP 1 LYS A 467 SER A 468 0 2.30 SITE 1 AC1 11 MET A 343 GLU A 353 LEU A 387 MET A 388 SITE 2 AC1 11 LEU A 391 ARG A 394 PHE A 404 GLY A 521 SITE 3 AC1 11 HIS A 524 LEU A 525 HOH A 733 SITE 1 AC2 8 GLU B 353 MET B 388 ARG B 394 PHE B 404 SITE 2 AC2 8 GLY B 521 HIS B 524 LEU B 525 HOH B 732 CRYST1 55.962 83.298 58.536 90.00 109.44 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017869 0.000000 0.006307 0.00000 SCALE2 0.000000 0.012005 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018116 0.00000