HEADER STRUCTURAL PROTEIN 01-SEP-15 5DII TITLE STRUCTURE OF AN ENGINEERED BACTERIAL MICROCOMPARTMENT SHELL PROTEIN TITLE 2 BINDING A [4FE-4S] CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROCOMPARTMENTS PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALIANGIUM OCHRACEUM (STRAIN DSM 14365 / JCM SOURCE 3 11303 / SMP-2); SOURCE 4 ORGANISM_TAXID: 502025; SOURCE 5 STRAIN: DSM 14365 / JCM 11303 / SMP-2; SOURCE 6 GENE: HOCH_5812; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENGINEERED PROTEIN, BACTERIAL MICROCOMPARTMENTS, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SUTTER,C.AUSSIGNARGUES,A.TURMO,C.A.KERFELD REVDAT 3 27-SEP-23 5DII 1 REMARK LINK REVDAT 2 11-MAY-16 5DII 1 JRNL REVDAT 1 03-FEB-16 5DII 0 JRNL AUTH C.AUSSIGNARGUES,M.E.PANDELIA,M.SUTTER,J.S.PLEGARIA, JRNL AUTH 2 J.ZARZYCKI,A.TURMO,J.HUANG,D.C.DUCAT,E.L.HEGG,B.R.GIBNEY, JRNL AUTH 3 C.A.KERFELD JRNL TITL STRUCTURE AND FUNCTION OF A BACTERIAL MICROCOMPARTMENT SHELL JRNL TITL 2 PROTEIN ENGINEERED TO BIND A [4FE-4S] CLUSTER. JRNL REF J.AM.CHEM.SOC. V. 138 5262 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 26704697 JRNL DOI 10.1021/JACS.5B11734 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 176084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6336 - 5.3396 0.98 7244 159 0.1715 0.1783 REMARK 3 2 5.3396 - 4.2399 0.94 6907 151 0.1473 0.1589 REMARK 3 3 4.2399 - 3.7044 0.93 6947 146 0.1390 0.1465 REMARK 3 4 3.7044 - 3.3659 0.93 6917 145 0.1583 0.1844 REMARK 3 5 3.3659 - 3.1248 0.93 6861 154 0.1571 0.2288 REMARK 3 6 3.1248 - 2.9406 0.92 6887 144 0.1656 0.2493 REMARK 3 7 2.9406 - 2.7934 0.92 6847 146 0.1638 0.2188 REMARK 3 8 2.7934 - 2.6718 0.91 6703 125 0.1610 0.1966 REMARK 3 9 2.6718 - 2.5690 0.91 6841 137 0.1814 0.2443 REMARK 3 10 2.5690 - 2.4804 0.91 6711 168 0.1855 0.2496 REMARK 3 11 2.4804 - 2.4028 0.91 6672 134 0.1794 0.2013 REMARK 3 12 2.4028 - 2.3342 0.90 6730 159 0.1870 0.2091 REMARK 3 13 2.3342 - 2.2727 0.89 6589 136 0.1916 0.2314 REMARK 3 14 2.2727 - 2.2173 0.90 6669 142 0.1935 0.2434 REMARK 3 15 2.2173 - 2.1669 0.89 6646 148 0.2040 0.2237 REMARK 3 16 2.1669 - 2.1208 0.89 6593 126 0.2118 0.2397 REMARK 3 17 2.1208 - 2.0783 0.88 6530 174 0.2207 0.2676 REMARK 3 18 2.0783 - 2.0391 0.88 6525 112 0.2360 0.3276 REMARK 3 19 2.0391 - 2.0027 0.89 6632 136 0.2599 0.2867 REMARK 3 20 2.0027 - 1.9688 0.88 6475 160 0.2758 0.2991 REMARK 3 21 1.9688 - 1.9370 0.88 6496 115 0.2953 0.2931 REMARK 3 22 1.9370 - 1.9072 0.87 6470 156 0.3059 0.3769 REMARK 3 23 1.9072 - 1.8792 0.87 6471 133 0.3208 0.3022 REMARK 3 24 1.8792 - 1.8527 0.87 6391 132 0.3489 0.3699 REMARK 3 25 1.8527 - 1.8277 0.86 6574 137 0.3684 0.3606 REMARK 3 26 1.8277 - 1.8039 0.70 5056 125 0.3887 0.3898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8971 REMARK 3 ANGLE : 1.401 12183 REMARK 3 CHIRALITY : 0.050 1458 REMARK 3 PLANARITY : 0.006 1583 REMARK 3 DIHEDRAL : 12.431 3297 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000211782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977408 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 176094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.625 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM NA ACETATE TRIHYDRATE, 100MM REMARK 280 TRIS PH 8.5, 26% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 TRP A 114 REMARK 465 GLU A 115 REMARK 465 GLU A 116 REMARK 465 ASP A 117 REMARK 465 THR A 118 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 GLU B 115 REMARK 465 GLU B 116 REMARK 465 ASP B 117 REMARK 465 THR B 118 REMARK 465 ALA C 14 REMARK 465 GLY C 15 REMARK 465 GLU C 115 REMARK 465 GLU C 116 REMARK 465 ASP C 117 REMARK 465 THR C 118 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 HIS D 3 REMARK 465 GLU D 198 REMARK 465 LEU D 199 REMARK 465 ARG D 200 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 HIS E 3 REMARK 465 ALA E 4 REMARK 465 PRO E 5 REMARK 465 GLU E 6 REMARK 465 GLU E 115 REMARK 465 GLU E 116 REMARK 465 ASP E 117 REMARK 465 THR E 118 REMARK 465 MET F 1 REMARK 465 ASP F 2 REMARK 465 HIS F 3 REMARK 465 ALA F 4 REMARK 465 GLU F 115 REMARK 465 GLU F 116 REMARK 465 ASP F 117 REMARK 465 THR F 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 55 HG SER B 56 1.51 REMARK 500 O HOH E 345 O HOH E 354 2.07 REMARK 500 O HOH B 352 O HOH B 367 2.15 REMARK 500 O HOH E 355 O HOH E 372 2.16 REMARK 500 O HOH B 368 O HOH B 373 2.16 REMARK 500 NH1 ARG C 103 O HOH C 301 2.17 REMARK 500 O HOH D 427 O HOH D 461 2.18 REMARK 500 O HOH C 321 O HOH C 345 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 45 43.45 -80.31 REMARK 500 SER A 56 -9.94 90.88 REMARK 500 ALA A 153 -52.20 69.84 REMARK 500 PRO B 45 43.61 -79.02 REMARK 500 SER B 56 -9.56 93.86 REMARK 500 ALA B 153 -49.31 69.05 REMARK 500 PRO C 45 47.11 -78.63 REMARK 500 SER C 56 -11.02 93.40 REMARK 500 ALA C 153 -50.52 68.98 REMARK 500 PRO D 45 43.31 -80.01 REMARK 500 SER D 56 -10.28 92.19 REMARK 500 ALA D 153 -50.90 69.00 REMARK 500 PRO E 45 42.65 -77.37 REMARK 500 SER E 56 -10.32 92.81 REMARK 500 ALA E 153 -50.69 70.41 REMARK 500 PRO F 45 45.38 -79.75 REMARK 500 SER F 56 -6.09 91.43 REMARK 500 ALA F 153 -52.08 68.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 359 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH E 380 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 55 SG REMARK 620 2 SF4 A 301 S2 123.9 REMARK 620 3 SF4 A 301 S3 122.1 99.2 REMARK 620 4 SF4 A 301 S4 109.2 99.7 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 55 SG REMARK 620 2 SF4 A 301 S1 124.1 REMARK 620 3 SF4 A 301 S3 123.7 99.7 REMARK 620 4 SF4 A 301 S4 106.9 99.1 97.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 381 O REMARK 620 2 SF4 A 301 S1 115.3 REMARK 620 3 SF4 A 301 S2 127.2 98.0 REMARK 620 4 SF4 A 301 S3 116.3 97.9 96.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 55 SG REMARK 620 2 SF4 A 301 S1 121.7 REMARK 620 3 SF4 A 301 S2 123.1 99.6 REMARK 620 4 SF4 A 301 S4 110.6 98.7 98.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 55 SG REMARK 620 2 SF4 D 301 S1 122.4 REMARK 620 3 SF4 D 301 S2 122.8 101.5 REMARK 620 4 SF4 D 301 S4 108.3 99.9 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 55 SG REMARK 620 2 SF4 D 301 S2 124.2 REMARK 620 3 SF4 D 301 S3 124.8 99.0 REMARK 620 4 SF4 D 301 S4 108.7 96.3 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 55 SG REMARK 620 2 SF4 D 301 S1 121.9 REMARK 620 3 SF4 D 301 S3 122.9 99.5 REMARK 620 4 SF4 D 301 S4 111.2 98.3 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 D 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH F 368 O REMARK 620 2 SF4 D 301 S1 109.9 REMARK 620 3 SF4 D 301 S2 140.0 98.2 REMARK 620 4 SF4 D 301 S3 107.1 96.4 97.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DIH RELATED DB: PDB REMARK 900 RELATED ID: 5DJB RELATED DB: PDB DBREF 5DII A 1 205 UNP D0LHE3 D0LHE3_HALO1 1 205 DBREF 5DII B 1 205 UNP D0LHE3 D0LHE3_HALO1 1 205 DBREF 5DII C 1 205 UNP D0LHE3 D0LHE3_HALO1 1 205 DBREF 5DII D 1 205 UNP D0LHE3 D0LHE3_HALO1 1 205 DBREF 5DII E 1 205 UNP D0LHE3 D0LHE3_HALO1 1 205 DBREF 5DII F 1 205 UNP D0LHE3 D0LHE3_HALO1 1 205 SEQADV 5DII CYS A 55 UNP D0LHE3 SER 55 ENGINEERED MUTATION SEQADV 5DII CYS B 55 UNP D0LHE3 SER 55 ENGINEERED MUTATION SEQADV 5DII CYS C 55 UNP D0LHE3 SER 55 ENGINEERED MUTATION SEQADV 5DII CYS D 55 UNP D0LHE3 SER 55 ENGINEERED MUTATION SEQADV 5DII CYS E 55 UNP D0LHE3 SER 55 ENGINEERED MUTATION SEQADV 5DII CYS F 55 UNP D0LHE3 SER 55 ENGINEERED MUTATION SEQRES 1 A 205 MET ASP HIS ALA PRO GLU ARG PHE ASP ALA THR PRO PRO SEQRES 2 A 205 ALA GLY GLU PRO ASP ARG PRO ALA LEU GLY VAL LEU GLU SEQRES 3 A 205 LEU THR SER ILE ALA ARG GLY ILE THR VAL ALA ASP ALA SEQRES 4 A 205 ALA LEU LYS ARG ALA PRO SER LEU LEU LEU MET SER ARG SEQRES 5 A 205 PRO VAL CYS SER GLY LYS HIS LEU LEU MET MET ARG GLY SEQRES 6 A 205 GLN VAL ALA GLU VAL GLU GLU SER MET ILE ALA ALA ARG SEQRES 7 A 205 GLU ILE ALA GLY ALA GLY SER GLY ALA LEU LEU ASP GLU SEQRES 8 A 205 LEU GLU LEU PRO TYR ALA HIS GLU GLN LEU TRP ARG PHE SEQRES 9 A 205 LEU ASP ALA PRO VAL VAL ALA ASP ALA TRP GLU GLU ASP SEQRES 10 A 205 THR GLU SER VAL ILE ILE VAL GLU THR ALA THR VAL CYS SEQRES 11 A 205 ALA ALA ILE ASP SER ALA ASP ALA ALA LEU LYS THR ALA SEQRES 12 A 205 PRO VAL VAL LEU ARG ASP MET ARG LEU ALA ILE GLY ILE SEQRES 13 A 205 ALA GLY LYS ALA PHE PHE THR LEU THR GLY GLU LEU ALA SEQRES 14 A 205 ASP VAL GLU ALA ALA ALA GLU VAL VAL ARG GLU ARG CYS SEQRES 15 A 205 GLY ALA ARG LEU LEU GLU LEU ALA CYS ILE ALA ARG PRO SEQRES 16 A 205 VAL ASP GLU LEU ARG GLY ARG LEU PHE PHE SEQRES 1 B 205 MET ASP HIS ALA PRO GLU ARG PHE ASP ALA THR PRO PRO SEQRES 2 B 205 ALA GLY GLU PRO ASP ARG PRO ALA LEU GLY VAL LEU GLU SEQRES 3 B 205 LEU THR SER ILE ALA ARG GLY ILE THR VAL ALA ASP ALA SEQRES 4 B 205 ALA LEU LYS ARG ALA PRO SER LEU LEU LEU MET SER ARG SEQRES 5 B 205 PRO VAL CYS SER GLY LYS HIS LEU LEU MET MET ARG GLY SEQRES 6 B 205 GLN VAL ALA GLU VAL GLU GLU SER MET ILE ALA ALA ARG SEQRES 7 B 205 GLU ILE ALA GLY ALA GLY SER GLY ALA LEU LEU ASP GLU SEQRES 8 B 205 LEU GLU LEU PRO TYR ALA HIS GLU GLN LEU TRP ARG PHE SEQRES 9 B 205 LEU ASP ALA PRO VAL VAL ALA ASP ALA TRP GLU GLU ASP SEQRES 10 B 205 THR GLU SER VAL ILE ILE VAL GLU THR ALA THR VAL CYS SEQRES 11 B 205 ALA ALA ILE ASP SER ALA ASP ALA ALA LEU LYS THR ALA SEQRES 12 B 205 PRO VAL VAL LEU ARG ASP MET ARG LEU ALA ILE GLY ILE SEQRES 13 B 205 ALA GLY LYS ALA PHE PHE THR LEU THR GLY GLU LEU ALA SEQRES 14 B 205 ASP VAL GLU ALA ALA ALA GLU VAL VAL ARG GLU ARG CYS SEQRES 15 B 205 GLY ALA ARG LEU LEU GLU LEU ALA CYS ILE ALA ARG PRO SEQRES 16 B 205 VAL ASP GLU LEU ARG GLY ARG LEU PHE PHE SEQRES 1 C 205 MET ASP HIS ALA PRO GLU ARG PHE ASP ALA THR PRO PRO SEQRES 2 C 205 ALA GLY GLU PRO ASP ARG PRO ALA LEU GLY VAL LEU GLU SEQRES 3 C 205 LEU THR SER ILE ALA ARG GLY ILE THR VAL ALA ASP ALA SEQRES 4 C 205 ALA LEU LYS ARG ALA PRO SER LEU LEU LEU MET SER ARG SEQRES 5 C 205 PRO VAL CYS SER GLY LYS HIS LEU LEU MET MET ARG GLY SEQRES 6 C 205 GLN VAL ALA GLU VAL GLU GLU SER MET ILE ALA ALA ARG SEQRES 7 C 205 GLU ILE ALA GLY ALA GLY SER GLY ALA LEU LEU ASP GLU SEQRES 8 C 205 LEU GLU LEU PRO TYR ALA HIS GLU GLN LEU TRP ARG PHE SEQRES 9 C 205 LEU ASP ALA PRO VAL VAL ALA ASP ALA TRP GLU GLU ASP SEQRES 10 C 205 THR GLU SER VAL ILE ILE VAL GLU THR ALA THR VAL CYS SEQRES 11 C 205 ALA ALA ILE ASP SER ALA ASP ALA ALA LEU LYS THR ALA SEQRES 12 C 205 PRO VAL VAL LEU ARG ASP MET ARG LEU ALA ILE GLY ILE SEQRES 13 C 205 ALA GLY LYS ALA PHE PHE THR LEU THR GLY GLU LEU ALA SEQRES 14 C 205 ASP VAL GLU ALA ALA ALA GLU VAL VAL ARG GLU ARG CYS SEQRES 15 C 205 GLY ALA ARG LEU LEU GLU LEU ALA CYS ILE ALA ARG PRO SEQRES 16 C 205 VAL ASP GLU LEU ARG GLY ARG LEU PHE PHE SEQRES 1 D 205 MET ASP HIS ALA PRO GLU ARG PHE ASP ALA THR PRO PRO SEQRES 2 D 205 ALA GLY GLU PRO ASP ARG PRO ALA LEU GLY VAL LEU GLU SEQRES 3 D 205 LEU THR SER ILE ALA ARG GLY ILE THR VAL ALA ASP ALA SEQRES 4 D 205 ALA LEU LYS ARG ALA PRO SER LEU LEU LEU MET SER ARG SEQRES 5 D 205 PRO VAL CYS SER GLY LYS HIS LEU LEU MET MET ARG GLY SEQRES 6 D 205 GLN VAL ALA GLU VAL GLU GLU SER MET ILE ALA ALA ARG SEQRES 7 D 205 GLU ILE ALA GLY ALA GLY SER GLY ALA LEU LEU ASP GLU SEQRES 8 D 205 LEU GLU LEU PRO TYR ALA HIS GLU GLN LEU TRP ARG PHE SEQRES 9 D 205 LEU ASP ALA PRO VAL VAL ALA ASP ALA TRP GLU GLU ASP SEQRES 10 D 205 THR GLU SER VAL ILE ILE VAL GLU THR ALA THR VAL CYS SEQRES 11 D 205 ALA ALA ILE ASP SER ALA ASP ALA ALA LEU LYS THR ALA SEQRES 12 D 205 PRO VAL VAL LEU ARG ASP MET ARG LEU ALA ILE GLY ILE SEQRES 13 D 205 ALA GLY LYS ALA PHE PHE THR LEU THR GLY GLU LEU ALA SEQRES 14 D 205 ASP VAL GLU ALA ALA ALA GLU VAL VAL ARG GLU ARG CYS SEQRES 15 D 205 GLY ALA ARG LEU LEU GLU LEU ALA CYS ILE ALA ARG PRO SEQRES 16 D 205 VAL ASP GLU LEU ARG GLY ARG LEU PHE PHE SEQRES 1 E 205 MET ASP HIS ALA PRO GLU ARG PHE ASP ALA THR PRO PRO SEQRES 2 E 205 ALA GLY GLU PRO ASP ARG PRO ALA LEU GLY VAL LEU GLU SEQRES 3 E 205 LEU THR SER ILE ALA ARG GLY ILE THR VAL ALA ASP ALA SEQRES 4 E 205 ALA LEU LYS ARG ALA PRO SER LEU LEU LEU MET SER ARG SEQRES 5 E 205 PRO VAL CYS SER GLY LYS HIS LEU LEU MET MET ARG GLY SEQRES 6 E 205 GLN VAL ALA GLU VAL GLU GLU SER MET ILE ALA ALA ARG SEQRES 7 E 205 GLU ILE ALA GLY ALA GLY SER GLY ALA LEU LEU ASP GLU SEQRES 8 E 205 LEU GLU LEU PRO TYR ALA HIS GLU GLN LEU TRP ARG PHE SEQRES 9 E 205 LEU ASP ALA PRO VAL VAL ALA ASP ALA TRP GLU GLU ASP SEQRES 10 E 205 THR GLU SER VAL ILE ILE VAL GLU THR ALA THR VAL CYS SEQRES 11 E 205 ALA ALA ILE ASP SER ALA ASP ALA ALA LEU LYS THR ALA SEQRES 12 E 205 PRO VAL VAL LEU ARG ASP MET ARG LEU ALA ILE GLY ILE SEQRES 13 E 205 ALA GLY LYS ALA PHE PHE THR LEU THR GLY GLU LEU ALA SEQRES 14 E 205 ASP VAL GLU ALA ALA ALA GLU VAL VAL ARG GLU ARG CYS SEQRES 15 E 205 GLY ALA ARG LEU LEU GLU LEU ALA CYS ILE ALA ARG PRO SEQRES 16 E 205 VAL ASP GLU LEU ARG GLY ARG LEU PHE PHE SEQRES 1 F 205 MET ASP HIS ALA PRO GLU ARG PHE ASP ALA THR PRO PRO SEQRES 2 F 205 ALA GLY GLU PRO ASP ARG PRO ALA LEU GLY VAL LEU GLU SEQRES 3 F 205 LEU THR SER ILE ALA ARG GLY ILE THR VAL ALA ASP ALA SEQRES 4 F 205 ALA LEU LYS ARG ALA PRO SER LEU LEU LEU MET SER ARG SEQRES 5 F 205 PRO VAL CYS SER GLY LYS HIS LEU LEU MET MET ARG GLY SEQRES 6 F 205 GLN VAL ALA GLU VAL GLU GLU SER MET ILE ALA ALA ARG SEQRES 7 F 205 GLU ILE ALA GLY ALA GLY SER GLY ALA LEU LEU ASP GLU SEQRES 8 F 205 LEU GLU LEU PRO TYR ALA HIS GLU GLN LEU TRP ARG PHE SEQRES 9 F 205 LEU ASP ALA PRO VAL VAL ALA ASP ALA TRP GLU GLU ASP SEQRES 10 F 205 THR GLU SER VAL ILE ILE VAL GLU THR ALA THR VAL CYS SEQRES 11 F 205 ALA ALA ILE ASP SER ALA ASP ALA ALA LEU LYS THR ALA SEQRES 12 F 205 PRO VAL VAL LEU ARG ASP MET ARG LEU ALA ILE GLY ILE SEQRES 13 F 205 ALA GLY LYS ALA PHE PHE THR LEU THR GLY GLU LEU ALA SEQRES 14 F 205 ASP VAL GLU ALA ALA ALA GLU VAL VAL ARG GLU ARG CYS SEQRES 15 F 205 GLY ALA ARG LEU LEU GLU LEU ALA CYS ILE ALA ARG PRO SEQRES 16 F 205 VAL ASP GLU LEU ARG GLY ARG LEU PHE PHE HET SF4 A 301 8 HET SF4 D 301 8 HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 7 SF4 2(FE4 S4) FORMUL 9 HOH *407(H2 O) HELIX 1 AA1 PRO A 5 ASP A 9 5 5 HELIX 2 AA2 SER A 29 ALA A 44 1 16 HELIX 3 AA3 GLN A 66 GLY A 82 1 17 HELIX 4 AA4 LEU A 101 LEU A 105 5 5 HELIX 5 AA5 THR A 128 ALA A 143 1 16 HELIX 6 AA6 GLU A 167 GLY A 183 1 17 HELIX 7 AA7 SER B 29 ALA B 44 1 16 HELIX 8 AA8 GLN B 66 GLY B 82 1 17 HELIX 9 AA9 LEU B 101 LEU B 105 5 5 HELIX 10 AB1 THR B 128 ALA B 143 1 16 HELIX 11 AB2 GLU B 167 GLY B 183 1 17 HELIX 12 AB3 ALA C 4 ASP C 9 5 6 HELIX 13 AB4 SER C 29 ALA C 44 1 16 HELIX 14 AB5 GLN C 66 GLY C 82 1 17 HELIX 15 AB6 HIS C 98 LEU C 105 5 8 HELIX 16 AB7 THR C 128 ALA C 143 1 16 HELIX 17 AB8 GLU C 167 GLY C 183 1 17 HELIX 18 AB9 ALA D 4 ASP D 9 5 6 HELIX 19 AC1 SER D 29 ALA D 44 1 16 HELIX 20 AC2 GLN D 66 GLY D 82 1 17 HELIX 21 AC3 LEU D 101 LEU D 105 5 5 HELIX 22 AC4 THR D 128 ALA D 143 1 16 HELIX 23 AC5 GLU D 167 GLY D 183 1 17 HELIX 24 AC6 SER E 29 ALA E 44 1 16 HELIX 25 AC7 GLN E 66 GLY E 82 1 17 HELIX 26 AC8 LEU E 101 LEU E 105 5 5 HELIX 27 AC9 THR E 128 ALA E 143 1 16 HELIX 28 AD1 GLU E 167 GLY E 183 1 17 HELIX 29 AD2 PRO F 5 ASP F 9 5 5 HELIX 30 AD3 SER F 29 ALA F 44 1 16 HELIX 31 AD4 GLN F 66 GLY F 82 1 17 HELIX 32 AD5 HIS F 98 LEU F 105 5 8 HELIX 33 AD6 THR F 128 ALA F 143 1 16 HELIX 34 AD7 GLU F 167 GLY F 183 1 17 SHEET 1 AA1 4 LEU A 47 VAL A 54 0 SHEET 2 AA1 4 LYS A 58 GLY A 65 -1 O ARG A 64 N LEU A 47 SHEET 3 AA1 4 ALA A 21 LEU A 27 -1 N LEU A 27 O HIS A 59 SHEET 4 AA1 4 LEU A 88 LEU A 94 -1 O LEU A 89 N GLU A 26 SHEET 1 AA2 4 VAL A 146 LEU A 152 0 SHEET 2 AA2 4 ALA A 160 GLY A 166 -1 O THR A 163 N ARG A 148 SHEET 3 AA2 4 SER A 120 THR A 126 -1 N SER A 120 O GLY A 166 SHEET 4 AA2 4 LEU A 186 ILE A 192 -1 O LEU A 187 N GLU A 125 SHEET 1 AA3 4 LEU B 47 VAL B 54 0 SHEET 2 AA3 4 LYS B 58 GLY B 65 -1 O ARG B 64 N LEU B 47 SHEET 3 AA3 4 ALA B 21 LEU B 27 -1 N LEU B 25 O LEU B 61 SHEET 4 AA3 4 LEU B 88 LEU B 94 -1 O LEU B 89 N GLU B 26 SHEET 1 AA4 4 VAL B 146 LEU B 152 0 SHEET 2 AA4 4 ALA B 160 GLY B 166 -1 O THR B 165 N VAL B 146 SHEET 3 AA4 4 SER B 120 THR B 126 -1 N VAL B 124 O PHE B 162 SHEET 4 AA4 4 LEU B 186 ILE B 192 -1 O LEU B 187 N GLU B 125 SHEET 1 AA5 4 LEU C 47 VAL C 54 0 SHEET 2 AA5 4 LYS C 58 GLY C 65 -1 O ARG C 64 N LEU C 47 SHEET 3 AA5 4 ALA C 21 LEU C 27 -1 N LEU C 27 O HIS C 59 SHEET 4 AA5 4 LEU C 88 LEU C 94 -1 O LEU C 89 N GLU C 26 SHEET 1 AA6 4 VAL C 146 LEU C 152 0 SHEET 2 AA6 4 ALA C 160 GLY C 166 -1 O THR C 165 N VAL C 146 SHEET 3 AA6 4 SER C 120 THR C 126 -1 N VAL C 124 O PHE C 162 SHEET 4 AA6 4 LEU C 186 ILE C 192 -1 O LEU C 187 N GLU C 125 SHEET 1 AA7 4 LEU D 47 VAL D 54 0 SHEET 2 AA7 4 LYS D 58 GLY D 65 -1 O ARG D 64 N LEU D 47 SHEET 3 AA7 4 ALA D 21 LEU D 27 -1 N LEU D 27 O HIS D 59 SHEET 4 AA7 4 LEU D 88 LEU D 94 -1 O LEU D 89 N GLU D 26 SHEET 1 AA8 4 VAL D 146 LEU D 152 0 SHEET 2 AA8 4 ALA D 160 GLY D 166 -1 O PHE D 161 N ARG D 151 SHEET 3 AA8 4 SER D 120 THR D 126 -1 N SER D 120 O GLY D 166 SHEET 4 AA8 4 LEU D 186 ILE D 192 -1 O LEU D 187 N GLU D 125 SHEET 1 AA9 4 LEU E 47 VAL E 54 0 SHEET 2 AA9 4 LYS E 58 GLY E 65 -1 O ARG E 64 N LEU E 47 SHEET 3 AA9 4 ALA E 21 LEU E 27 -1 N LEU E 25 O LEU E 61 SHEET 4 AA9 4 LEU E 88 LEU E 94 -1 O LEU E 89 N GLU E 26 SHEET 1 AB1 4 VAL E 146 LEU E 152 0 SHEET 2 AB1 4 ALA E 160 GLY E 166 -1 O THR E 165 N VAL E 146 SHEET 3 AB1 4 SER E 120 THR E 126 -1 N VAL E 124 O PHE E 162 SHEET 4 AB1 4 LEU E 186 ILE E 192 -1 O LEU E 187 N GLU E 125 SHEET 1 AB2 4 LEU F 47 VAL F 54 0 SHEET 2 AB2 4 LYS F 58 GLY F 65 -1 O ARG F 64 N LEU F 47 SHEET 3 AB2 4 ALA F 21 LEU F 27 -1 N LEU F 27 O HIS F 59 SHEET 4 AB2 4 LEU F 88 LEU F 94 -1 O LEU F 89 N GLU F 26 SHEET 1 AB3 4 VAL F 146 LEU F 152 0 SHEET 2 AB3 4 ALA F 160 GLY F 166 -1 O THR F 165 N VAL F 146 SHEET 3 AB3 4 SER F 120 THR F 126 -1 N VAL F 124 O PHE F 162 SHEET 4 AB3 4 LEU F 186 ILE F 192 -1 O ILE F 192 N VAL F 121 LINK SG CYS A 55 FE1 SF4 A 301 1555 1555 2.28 LINK FE2 SF4 A 301 SG CYS B 55 1555 1555 2.28 LINK FE4 SF4 A 301 O HOH B 381 1555 1555 2.08 LINK FE3 SF4 A 301 SG CYS C 55 1555 1555 2.29 LINK SG CYS D 55 FE3 SF4 D 301 1555 1555 2.27 LINK FE1 SF4 D 301 SG CYS E 55 1555 1555 2.27 LINK FE2 SF4 D 301 SG CYS F 55 1555 1555 2.28 LINK FE4 SF4 D 301 O HOH F 368 1555 1555 2.08 SITE 1 AC1 7 CYS A 55 ALA A 157 CYS B 55 ALA B 157 SITE 2 AC1 7 HOH B 381 CYS C 55 ALA C 157 SITE 1 AC2 7 CYS D 55 ALA D 157 CYS E 55 ALA E 157 SITE 2 AC2 7 CYS F 55 ALA F 157 HOH F 368 CRYST1 42.897 55.558 117.930 83.45 81.22 86.95 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023312 -0.001242 -0.003487 0.00000 SCALE2 0.000000 0.018025 -0.001947 0.00000 SCALE3 0.000000 0.000000 0.008630 0.00000