HEADER OXIDOREDUCTASE 01-SEP-15 5DIP TITLE CRYSTAL STRUCTURE OF LPG0406 IN REDUCED FORM FROM LEGIONELLA TITLE 2 PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKYL HYDROPEROXIDE REDUCTASE AHPD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALKYLHYDROPEROXIDASE; COMPND 5 EC: 1.11.1.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: LPTWR_00386, LPYMG_00422; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA KEYWDS ALKYLHYDROPEROXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,X.GONG,N.ZHANG,H.GE REVDAT 3 08-NOV-23 5DIP 1 JRNL REMARK LINK REVDAT 2 27-JAN-16 5DIP 1 JRNL REVDAT 1 14-OCT-15 5DIP 0 JRNL AUTH X.CHEN,Y.HU,B.YANG,X.GONG,N.ZHANG,L.NIU,Y.WU,H.GE JRNL TITL STRUCTURE OF LPG0406, A CARBOXYMUCONOLACTONE DECARBOXYLASE JRNL TITL 2 FAMILY PROTEIN POSSIBLY INVOLVED IN ANTIOXIDATIVE RESPONSE JRNL TITL 3 FROM LEGIONELLA PNEUMOPHILA JRNL REF PROTEIN SCI. V. 24 2070 2015 JRNL REFN ESSN 1469-896X JRNL PMID 26402328 JRNL DOI 10.1002/PRO.2811 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5791 - 4.6587 1.00 2708 140 0.1277 0.1499 REMARK 3 2 4.6587 - 3.7003 1.00 2648 134 0.1092 0.1318 REMARK 3 3 3.7003 - 3.2333 1.00 2599 142 0.1298 0.1465 REMARK 3 4 3.2333 - 2.9380 1.00 2594 148 0.1532 0.1816 REMARK 3 5 2.9380 - 2.7276 1.00 2601 141 0.1581 0.1798 REMARK 3 6 2.7276 - 2.5669 1.00 2585 145 0.1503 0.1739 REMARK 3 7 2.5669 - 2.4384 1.00 2611 125 0.1456 0.1564 REMARK 3 8 2.4384 - 2.3323 1.00 2573 147 0.1449 0.1750 REMARK 3 9 2.3323 - 2.2425 1.00 2562 133 0.1301 0.1530 REMARK 3 10 2.2425 - 2.1652 1.00 2609 136 0.1337 0.1669 REMARK 3 11 2.1652 - 2.0975 1.00 2629 137 0.1361 0.1699 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1806 REMARK 3 ANGLE : 1.123 2441 REMARK 3 CHIRALITY : 0.049 284 REMARK 3 PLANARITY : 0.005 308 REMARK 3 DIHEDRAL : 14.296 700 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.097 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5DIK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 22% PEG 3350, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.85600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.85600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.85600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.85600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 72.85600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 72.85600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 72.85600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 72.85600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 72.85600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 72.85600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 72.85600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 72.85600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.85600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.85600 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 72.85600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.85600 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 72.85600 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 72.85600 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 72.85600 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 72.85600 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 72.85600 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 72.85600 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 72.85600 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 72.85600 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 72.85600 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -321.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 72.85600 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 72.85600 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -72.85600 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 72.85600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 394 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 385 O HOH B 392 2.02 REMARK 500 O HOH A 365 O HOH A 386 2.10 REMARK 500 O HOH A 373 O HOH A 386 2.13 REMARK 500 O HOH B 391 O HOH B 399 2.18 REMARK 500 O HOH A 354 O HOH A 370 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 308 O HOH B 373 10545 2.09 REMARK 500 O HOH B 387 O HOH B 387 16555 2.15 REMARK 500 O HOH B 385 O HOH B 403 16555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 26 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU B 26 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 387 O REMARK 620 2 HOH B 340 O 75.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 375 O REMARK 620 2 HOH B 388 O 69.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DIK RELATED DB: PDB DBREF1 5DIP A 1 113 UNP A0A0C9P2U2_LEGPN DBREF2 5DIP A A0A0C9P2U2 1 113 DBREF1 5DIP B 1 113 UNP A0A0C9P2U2_LEGPN DBREF2 5DIP B A0A0C9P2U2 1 113 SEQADV 5DIP MET A -7 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP GLY A -6 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS A -5 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS A -4 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS A -3 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS A -2 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS A -1 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS A 0 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP MET B -7 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP GLY B -6 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS B -5 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS B -4 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS B -3 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS B -2 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS B -1 UNP A0A0C9P2U EXPRESSION TAG SEQADV 5DIP HIS B 0 UNP A0A0C9P2U EXPRESSION TAG SEQRES 1 A 121 MET GLY HIS HIS HIS HIS HIS HIS MET SER ASP LYS PHE SEQRES 2 A 121 SER HIS ILE THR LYS ASP ILE THR THR GLN LEU ALA LYS SEQRES 3 A 121 PHE ARG LYS GLU MET PRO GLU LEU MET THR GLY PHE SER SEQRES 4 A 121 SER LEU ALA GLN ALA ALA THR LYS ASP GLY ALA LEU ASP SEQRES 5 A 121 LYS LYS THR LYS GLU LEU ILE ALA MET ALA LEU ALA VAL SEQRES 6 A 121 ALA LYS GLN CYS PRO GLY CYS ILE GLY PHE HIS SER GLN SEQRES 7 A 121 THR LEU VAL LYS LEU GLN ALA THR ARG GLU GLU LEU LEU SEQRES 8 A 121 GLU THR LEU GLY MET ALA VAL TYR MET GLY GLY GLY PRO SEQRES 9 A 121 SER LEU MET TYR ALA ALA GLU ALA LEU GLU ALA PHE GLU SEQRES 10 A 121 GLU PHE SER LYS SEQRES 1 B 121 MET GLY HIS HIS HIS HIS HIS HIS MET SER ASP LYS PHE SEQRES 2 B 121 SER HIS ILE THR LYS ASP ILE THR THR GLN LEU ALA LYS SEQRES 3 B 121 PHE ARG LYS GLU MET PRO GLU LEU MET THR GLY PHE SER SEQRES 4 B 121 SER LEU ALA GLN ALA ALA THR LYS ASP GLY ALA LEU ASP SEQRES 5 B 121 LYS LYS THR LYS GLU LEU ILE ALA MET ALA LEU ALA VAL SEQRES 6 B 121 ALA LYS GLN CYS PRO GLY CYS ILE GLY PHE HIS SER GLN SEQRES 7 B 121 THR LEU VAL LYS LEU GLN ALA THR ARG GLU GLU LEU LEU SEQRES 8 B 121 GLU THR LEU GLY MET ALA VAL TYR MET GLY GLY GLY PRO SEQRES 9 B 121 SER LEU MET TYR ALA ALA GLU ALA LEU GLU ALA PHE GLU SEQRES 10 B 121 GLU PHE SER LYS HET NA A 201 1 HET NA A 202 1 HET GOL B 201 6 HET NA B 202 1 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA 3(NA 1+) FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *210(H2 O) HELIX 1 AA1 ASP A 3 MET A 23 1 21 HELIX 2 AA2 MET A 23 LYS A 39 1 17 HELIX 3 AA3 ASP A 44 LYS A 59 1 16 HELIX 4 AA4 CYS A 61 LEU A 75 1 15 HELIX 5 AA5 THR A 78 MET A 92 1 15 HELIX 6 AA6 GLY A 94 SER A 112 1 19 HELIX 7 AA7 ASP B 3 MET B 23 1 21 HELIX 8 AA8 MET B 23 LYS B 39 1 17 HELIX 9 AA9 ASP B 44 LYS B 59 1 16 HELIX 10 AB1 CYS B 61 LEU B 75 1 15 HELIX 11 AB2 THR B 78 MET B 92 1 15 HELIX 12 AB3 GLY B 93 SER B 112 1 20 LINK NA NA A 201 O HOH A 387 1555 1555 2.71 LINK NA NA A 201 O HOH B 340 1555 1555 2.98 LINK NA NA A 202 O HOH B 393 1555 10545 3.03 LINK O HOH A 375 NA NA B 202 1555 1555 2.86 LINK NA NA B 202 O HOH B 388 1555 1555 2.79 SITE 1 AC1 6 CYS A 64 HIS A 68 GLY A 95 HOH A 387 SITE 2 AC1 6 MET B 92 HOH B 340 SITE 1 AC2 6 MET A 23 PRO A 24 GLU A 25 LEU A 26 SITE 2 AC2 6 LYS B 39 HOH B 393 SITE 1 AC3 4 LYS B 4 ASP B 11 ILE B 12 GLU B 106 SITE 1 AC4 6 MET A 92 HOH A 375 CYS B 64 HIS B 68 SITE 2 AC4 6 GLY B 95 HOH B 388 CRYST1 145.712 145.712 145.712 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006863 0.00000