HEADER HYDROLASE 01-SEP-15 5DIZ TITLE CRYSTAL STRUCTURE OF NUCLEAR PROTEINACEOUS RNASE P 2 (PRORP2) FROM A. TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINACEOUS RNASE P 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.26.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PRORP2, AT2G16650, T24I21.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS RNA BINDING PROTEIN, METALLONUCLEASE, PRORP, RIBONUCLEASE, TRNA KEYWDS 2 PROCESSING, RNASE P, NYN DOMAIN, PPR DOMAIN, NUCLEUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KARASIK,A.SHANMUGANATHAN,M.J.HOWARD,C.A.FIERKE,M.KOUTMOS REVDAT 4 27-SEP-23 5DIZ 1 REMARK REVDAT 3 01-NOV-17 5DIZ 1 JRNL REMARK REVDAT 2 17-FEB-16 5DIZ 1 JRNL REVDAT 1 30-DEC-15 5DIZ 0 JRNL AUTH A.KARASIK,A.SHANMUGANATHAN,M.J.HOWARD,C.A.FIERKE,M.KOUTMOS JRNL TITL NUCLEAR PROTEIN-ONLY RIBONUCLEASE P2 STRUCTURE AND JRNL TITL 2 BIOCHEMICAL CHARACTERIZATION PROVIDE INSIGHT INTO THE JRNL TITL 3 CONSERVED PROPERTIES OF TRNA 5' END PROCESSING ENZYMES. JRNL REF J.MOL.BIOL. V. 428 26 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 26655022 JRNL DOI 10.1016/J.JMB.2015.11.025 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 22090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1506 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 123.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83000 REMARK 3 B22 (A**2) : 15.57000 REMARK 3 B33 (A**2) : -8.17000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 3.92000 REMARK 3 B23 (A**2) : -4.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.518 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.550 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7653 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7302 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10350 ; 0.970 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16599 ; 0.843 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 944 ; 5.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 364 ;33.591 ;24.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1330 ;13.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;11.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1129 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8696 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1770 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3782 ; 2.389 ;12.268 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3781 ; 2.388 ;12.267 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4718 ; 4.176 ;18.395 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4719 ; 4.176 ;18.395 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3871 ; 1.797 ;12.390 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3872 ; 1.797 ;12.391 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5631 ; 3.289 ;18.518 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8624 ; 6.185 ;96.662 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8625 ; 6.185 ;96.670 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5DIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23244 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19.9 % (W/V) PEG3000, AND 0.21 M REMARK 280 SODIUM CITRATE, PH 7.8, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER BY ANALYTICAL ULTRACENTRIFUGATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 GLN A 6 REMARK 465 HIS A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 HIS A 12 REMARK 465 ASP A 13 REMARK 465 GLU A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 PRO A 19 REMARK 465 ASN A 20 REMARK 465 LYS A 21 REMARK 465 LYS A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 VAL A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 ASN A 237 REMARK 465 GLY A 238 REMARK 465 ILE A 239 REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 LYS A 313 REMARK 465 THR A 314 REMARK 465 LYS A 315 REMARK 465 MET A 316 REMARK 465 ASN A 317 REMARK 465 SER A 318 REMARK 465 CYS A 319 REMARK 465 GLU A 320 REMARK 465 THR A 321 REMARK 465 ASN A 322 REMARK 465 ILE A 517 REMARK 465 LEU A 518 REMARK 465 ASP A 519 REMARK 465 SER A 520 REMARK 465 PRO A 521 REMARK 465 LYS A 522 REMARK 465 SER A 523 REMARK 465 ASN A 524 REMARK 465 GLY A 525 REMARK 465 LYS A 526 REMARK 465 ILE A 527 REMARK 465 PRO A 528 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 GLN B 6 REMARK 465 HIS B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 ARG B 10 REMARK 465 ARG B 11 REMARK 465 HIS B 12 REMARK 465 ASP B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 PRO B 19 REMARK 465 ASN B 20 REMARK 465 LYS B 21 REMARK 465 LYS B 22 REMARK 465 LYS B 23 REMARK 465 LYS B 24 REMARK 465 VAL B 25 REMARK 465 SER B 26 REMARK 465 ASN B 237 REMARK 465 GLY B 238 REMARK 465 ILE B 239 REMARK 465 GLY B 240 REMARK 465 SER B 241 REMARK 465 ARG B 312 REMARK 465 LYS B 313 REMARK 465 THR B 314 REMARK 465 LYS B 315 REMARK 465 MET B 316 REMARK 465 ASN B 317 REMARK 465 SER B 318 REMARK 465 CYS B 319 REMARK 465 GLU B 320 REMARK 465 THR B 321 REMARK 465 ASN B 322 REMARK 465 VAL B 323 REMARK 465 SER B 516 REMARK 465 ILE B 517 REMARK 465 LEU B 518 REMARK 465 ASP B 519 REMARK 465 SER B 520 REMARK 465 PRO B 521 REMARK 465 LYS B 522 REMARK 465 SER B 523 REMARK 465 ASN B 524 REMARK 465 GLY B 525 REMARK 465 LYS B 526 REMARK 465 ILE B 527 REMARK 465 PRO B 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 143 64.56 60.53 REMARK 500 VAL A 211 -65.84 -124.70 REMARK 500 VAL A 243 -57.05 -135.02 REMARK 500 HIS A 260 109.88 -163.45 REMARK 500 GLU A 265 -62.08 -106.99 REMARK 500 LYS A 267 85.65 59.48 REMARK 500 ASP A 311 64.42 -158.41 REMARK 500 ASN A 378 76.56 63.03 REMARK 500 THR A 392 -39.18 83.85 REMARK 500 LYS A 433 70.56 60.31 REMARK 500 ASP A 440 93.50 -162.55 REMARK 500 GLN A 456 -58.91 67.38 REMARK 500 LYS A 470 -74.76 64.82 REMARK 500 GLN A 515 91.56 64.07 REMARK 500 LEU B 64 152.23 68.82 REMARK 500 SER B 84 -36.01 88.20 REMARK 500 ILE B 143 77.30 62.05 REMARK 500 HIS B 260 92.38 -160.41 REMARK 500 GLU B 265 -51.22 82.69 REMARK 500 ARG B 280 83.59 58.49 REMARK 500 ASP B 337 51.37 -154.62 REMARK 500 ASN B 377 39.78 35.38 REMARK 500 ASN B 401 -62.07 79.09 REMARK 500 LEU B 412 108.05 -163.41 REMARK 500 LYS B 433 70.47 59.89 REMARK 500 ARG B 443 -124.06 -86.33 REMARK 500 ASP B 444 158.60 73.86 REMARK 500 LYS B 470 -79.29 55.95 REMARK 500 ASN B 502 89.83 -62.45 REMARK 500 GLU B 504 -76.75 63.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 HIS A 494 NE2 109.8 REMARK 620 3 CYS A 511 SG 118.8 96.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 281 SG REMARK 620 2 CYS B 284 SG 130.3 REMARK 620 3 HIS B 494 NE2 106.0 92.6 REMARK 620 4 CYS B 511 SG 117.7 107.3 91.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 DBREF 5DIZ A 1 528 UNP Q680B9 PRRP2_ARATH 1 528 DBREF 5DIZ B 1 528 UNP Q680B9 PRRP2_ARATH 1 528 SEQADV 5DIZ SER A -2 UNP Q680B9 EXPRESSION TAG SEQADV 5DIZ ASN A -1 UNP Q680B9 EXPRESSION TAG SEQADV 5DIZ ALA A 0 UNP Q680B9 EXPRESSION TAG SEQADV 5DIZ SER B -2 UNP Q680B9 EXPRESSION TAG SEQADV 5DIZ ASN B -1 UNP Q680B9 EXPRESSION TAG SEQADV 5DIZ ALA B 0 UNP Q680B9 EXPRESSION TAG SEQRES 1 A 531 SER ASN ALA MET ALA ALA SER ASP GLN HIS ARG SER ARG SEQRES 2 A 531 ARG HIS ASP GLU SER SER SER ARG PRO ASN LYS LYS LYS SEQRES 3 A 531 LYS VAL SER ARG ASN PRO GLU THR ASN LEU LEU PHE ASN SEQRES 4 A 531 LEU ASN SER CYS SER LYS SER LYS ASP LEU SER ALA ALA SEQRES 5 A 531 LEU ALA LEU TYR ASP ALA ALA ILE THR SER SER GLU VAL SEQRES 6 A 531 ARG LEU SER GLN GLN HIS PHE GLN THR LEU LEU TYR LEU SEQRES 7 A 531 CYS SER ALA SER ILE THR ASP ILE SER LEU GLN TYR LEU SEQRES 8 A 531 ALA ILE ASP ARG GLY PHE GLU ILE PHE ASP ARG MET VAL SEQRES 9 A 531 SER SER GLY ILE SER PRO ASN GLU ALA SER VAL THR SER SEQRES 10 A 531 VAL ALA ARG LEU ALA ALA ALA LYS GLY ASN GLY ASP TYR SEQRES 11 A 531 ALA PHE LYS VAL VAL LYS GLU PHE VAL SER VAL GLY GLY SEQRES 12 A 531 VAL SER ILE PRO ARG LEU ARG THR TYR ALA PRO ALA LEU SEQRES 13 A 531 LEU CYS PHE CYS GLU LYS LEU GLU ALA GLU LYS GLY TYR SEQRES 14 A 531 GLU VAL GLU GLU HIS MET GLU ALA ALA GLY ILE ALA LEU SEQRES 15 A 531 GLU GLU ALA GLU ILE SER ALA LEU LEU LYS VAL SER ALA SEQRES 16 A 531 ALA THR GLY ARG GLU ASN LYS VAL TYR ARG TYR LEU HIS SEQRES 17 A 531 LYS LEU ARG GLU TYR VAL GLY CYS VAL SER GLU GLU THR SEQRES 18 A 531 LEU LYS ILE ILE GLU GLU TRP PHE CYS GLY GLU LYS ALA SEQRES 19 A 531 GLY GLU VAL GLY ASP ASN GLY ILE GLY SER ASP VAL GLY SEQRES 20 A 531 MET LEU ARG GLU ALA VAL LEU ASN ASN GLY GLY GLY TRP SEQRES 21 A 531 HIS GLY HIS GLY TRP VAL GLY GLU GLY LYS TRP THR VAL SEQRES 22 A 531 LYS LYS GLY ASN VAL SER SER THR GLY ARG CYS LEU SER SEQRES 23 A 531 CYS SER GLU GLN LEU ALA CYS VAL ASP THR ASN GLU VAL SEQRES 24 A 531 GLU THR GLN LYS PHE VAL ASP SER LEU VAL ALA LEU ALA SEQRES 25 A 531 MET ASP ARG LYS THR LYS MET ASN SER CYS GLU THR ASN SEQRES 26 A 531 VAL VAL PHE SER GLU PHE GLN ASP TRP LEU GLU LYS HIS SEQRES 27 A 531 GLY ASP TYR GLU ALA ILE VAL ASP GLY ALA ASN ILE GLY SEQRES 28 A 531 LEU TYR GLN GLN ASN PHE VAL ASP GLY SER PHE SER LEU SEQRES 29 A 531 SER GLN LEU GLU SER VAL MET LYS GLU LEU TYR ARG GLU SEQRES 30 A 531 SER GLY ASN ASN LYS TRP PRO LEU ILE LEU LEU HIS LYS SEQRES 31 A 531 ARG ARG VAL LYS THR LEU LEU GLU ASN PRO THR HIS ARG SEQRES 32 A 531 ASN LEU VAL GLU GLU TRP ILE SER ASN GLY VAL LEU TYR SEQRES 33 A 531 ALA THR PRO PRO GLY SER ASN ASP ASP TRP TYR TRP LEU SEQRES 34 A 531 TYR ALA ALA ALA LYS LEU LYS CYS LEU LEU VAL THR ASN SEQRES 35 A 531 ASP GLU MET ARG ASP HIS ILE PHE GLU LEU LEU GLY SER SEQRES 36 A 531 THR PHE PHE GLN LYS TRP LYS GLU ARG HIS GLN VAL ARG SEQRES 37 A 531 TYR THR PHE VAL LYS GLY ASN LEU LYS LEU GLU MET PRO SEQRES 38 A 531 SER PRO PHE SER VAL VAL ILE GLN GLU SER GLU LYS GLY SEQRES 39 A 531 SER TRP HIS PHE PRO VAL SER CYS GLU ASN ASN GLU GLU SEQRES 40 A 531 SER SER ARG THR TRP MET CYS ILE SER ARG GLN SER ILE SEQRES 41 A 531 LEU ASP SER PRO LYS SER ASN GLY LYS ILE PRO SEQRES 1 B 531 SER ASN ALA MET ALA ALA SER ASP GLN HIS ARG SER ARG SEQRES 2 B 531 ARG HIS ASP GLU SER SER SER ARG PRO ASN LYS LYS LYS SEQRES 3 B 531 LYS VAL SER ARG ASN PRO GLU THR ASN LEU LEU PHE ASN SEQRES 4 B 531 LEU ASN SER CYS SER LYS SER LYS ASP LEU SER ALA ALA SEQRES 5 B 531 LEU ALA LEU TYR ASP ALA ALA ILE THR SER SER GLU VAL SEQRES 6 B 531 ARG LEU SER GLN GLN HIS PHE GLN THR LEU LEU TYR LEU SEQRES 7 B 531 CYS SER ALA SER ILE THR ASP ILE SER LEU GLN TYR LEU SEQRES 8 B 531 ALA ILE ASP ARG GLY PHE GLU ILE PHE ASP ARG MET VAL SEQRES 9 B 531 SER SER GLY ILE SER PRO ASN GLU ALA SER VAL THR SER SEQRES 10 B 531 VAL ALA ARG LEU ALA ALA ALA LYS GLY ASN GLY ASP TYR SEQRES 11 B 531 ALA PHE LYS VAL VAL LYS GLU PHE VAL SER VAL GLY GLY SEQRES 12 B 531 VAL SER ILE PRO ARG LEU ARG THR TYR ALA PRO ALA LEU SEQRES 13 B 531 LEU CYS PHE CYS GLU LYS LEU GLU ALA GLU LYS GLY TYR SEQRES 14 B 531 GLU VAL GLU GLU HIS MET GLU ALA ALA GLY ILE ALA LEU SEQRES 15 B 531 GLU GLU ALA GLU ILE SER ALA LEU LEU LYS VAL SER ALA SEQRES 16 B 531 ALA THR GLY ARG GLU ASN LYS VAL TYR ARG TYR LEU HIS SEQRES 17 B 531 LYS LEU ARG GLU TYR VAL GLY CYS VAL SER GLU GLU THR SEQRES 18 B 531 LEU LYS ILE ILE GLU GLU TRP PHE CYS GLY GLU LYS ALA SEQRES 19 B 531 GLY GLU VAL GLY ASP ASN GLY ILE GLY SER ASP VAL GLY SEQRES 20 B 531 MET LEU ARG GLU ALA VAL LEU ASN ASN GLY GLY GLY TRP SEQRES 21 B 531 HIS GLY HIS GLY TRP VAL GLY GLU GLY LYS TRP THR VAL SEQRES 22 B 531 LYS LYS GLY ASN VAL SER SER THR GLY ARG CYS LEU SER SEQRES 23 B 531 CYS SER GLU GLN LEU ALA CYS VAL ASP THR ASN GLU VAL SEQRES 24 B 531 GLU THR GLN LYS PHE VAL ASP SER LEU VAL ALA LEU ALA SEQRES 25 B 531 MET ASP ARG LYS THR LYS MET ASN SER CYS GLU THR ASN SEQRES 26 B 531 VAL VAL PHE SER GLU PHE GLN ASP TRP LEU GLU LYS HIS SEQRES 27 B 531 GLY ASP TYR GLU ALA ILE VAL ASP GLY ALA ASN ILE GLY SEQRES 28 B 531 LEU TYR GLN GLN ASN PHE VAL ASP GLY SER PHE SER LEU SEQRES 29 B 531 SER GLN LEU GLU SER VAL MET LYS GLU LEU TYR ARG GLU SEQRES 30 B 531 SER GLY ASN ASN LYS TRP PRO LEU ILE LEU LEU HIS LYS SEQRES 31 B 531 ARG ARG VAL LYS THR LEU LEU GLU ASN PRO THR HIS ARG SEQRES 32 B 531 ASN LEU VAL GLU GLU TRP ILE SER ASN GLY VAL LEU TYR SEQRES 33 B 531 ALA THR PRO PRO GLY SER ASN ASP ASP TRP TYR TRP LEU SEQRES 34 B 531 TYR ALA ALA ALA LYS LEU LYS CYS LEU LEU VAL THR ASN SEQRES 35 B 531 ASP GLU MET ARG ASP HIS ILE PHE GLU LEU LEU GLY SER SEQRES 36 B 531 THR PHE PHE GLN LYS TRP LYS GLU ARG HIS GLN VAL ARG SEQRES 37 B 531 TYR THR PHE VAL LYS GLY ASN LEU LYS LEU GLU MET PRO SEQRES 38 B 531 SER PRO PHE SER VAL VAL ILE GLN GLU SER GLU LYS GLY SEQRES 39 B 531 SER TRP HIS PHE PRO VAL SER CYS GLU ASN ASN GLU GLU SEQRES 40 B 531 SER SER ARG THR TRP MET CYS ILE SER ARG GLN SER ILE SEQRES 41 B 531 LEU ASP SER PRO LYS SER ASN GLY LYS ILE PRO HET ZN A1001 1 HET ZN B1001 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *5(H2 O) HELIX 1 AA1 ASN A 28 LYS A 44 1 17 HELIX 2 AA2 ASP A 45 SER A 60 1 16 HELIX 3 AA3 SER A 65 SER A 79 1 15 HELIX 4 AA4 LEU A 85 SER A 103 1 19 HELIX 5 AA5 ASN A 108 LYS A 122 1 15 HELIX 6 AA6 ASN A 124 GLY A 139 1 16 HELIX 7 AA7 ARG A 145 LYS A 159 1 15 HELIX 8 AA8 GLU A 161 GLY A 176 1 16 HELIX 9 AA9 GLU A 180 GLY A 195 1 16 HELIX 10 AB1 ARG A 196 VAL A 211 1 16 HELIX 11 AB2 SER A 215 GLY A 228 1 14 HELIX 12 AB3 GLU A 229 GLU A 233 5 5 HELIX 13 AB4 VAL A 243 GLY A 254 1 12 HELIX 14 AB5 ASN A 294 MET A 310 1 17 HELIX 15 AB6 PHE A 325 HIS A 335 1 11 HELIX 16 AB7 GLY A 344 TYR A 350 1 7 HELIX 17 AB8 SER A 360 SER A 375 1 16 HELIX 18 AB9 LYS A 387 LYS A 391 1 5 HELIX 19 AC1 HIS A 399 ASN A 409 1 11 HELIX 20 AC2 ASP A 421 LYS A 433 1 13 HELIX 21 AC3 TRP A 458 HIS A 462 1 5 HELIX 22 AC4 ASN B 28 LYS B 42 1 15 HELIX 23 AC5 ASP B 45 SER B 60 1 16 HELIX 24 AC6 SER B 65 SER B 79 1 15 HELIX 25 AC7 LEU B 85 SER B 103 1 19 HELIX 26 AC8 ASN B 108 LYS B 122 1 15 HELIX 27 AC9 ASN B 124 SER B 137 1 14 HELIX 28 AD1 ARG B 145 LYS B 159 1 15 HELIX 29 AD2 GLU B 161 ALA B 175 1 15 HELIX 30 AD3 GLU B 180 THR B 194 1 15 HELIX 31 AD4 ARG B 196 VAL B 211 1 16 HELIX 32 AD5 SER B 215 GLY B 228 1 14 HELIX 33 AD6 VAL B 243 ASN B 253 1 11 HELIX 34 AD7 ASN B 294 MET B 310 1 17 HELIX 35 AD8 PHE B 325 LYS B 334 1 10 HELIX 36 AD9 ASP B 343 TYR B 350 1 8 HELIX 37 AE1 SER B 360 GLY B 376 1 17 HELIX 38 AE2 LYS B 387 GLU B 395 1 9 HELIX 39 AE3 ASN B 401 GLY B 410 1 10 HELIX 40 AE4 ASP B 421 LYS B 433 1 13 HELIX 41 AE5 ILE B 446 LEU B 450 5 5 HELIX 42 AE6 GLY B 451 HIS B 462 1 12 SHEET 1 AA1 4 THR A 269 ASN A 274 0 SHEET 2 AA1 4 THR A 508 SER A 513 -1 O SER A 513 N THR A 269 SHEET 3 AA1 4 TRP A 493 PRO A 496 -1 N PHE A 495 O MET A 510 SHEET 4 AA1 4 GLN A 486 GLU A 487 -1 N GLN A 486 O HIS A 494 SHEET 1 AA2 6 LEU A 412 THR A 415 0 SHEET 2 AA2 6 LEU A 382 HIS A 386 1 N LEU A 385 O THR A 415 SHEET 3 AA2 6 ALA A 340 ASP A 343 1 N VAL A 342 O LEU A 382 SHEET 4 AA2 6 LEU A 435 VAL A 437 1 O VAL A 437 N ILE A 341 SHEET 5 AA2 6 GLN A 463 VAL A 469 1 O VAL A 464 N LEU A 436 SHEET 6 AA2 6 ASN A 472 GLU A 476 -1 O LYS A 474 N THR A 467 SHEET 1 AA3 4 TRP B 268 ASN B 274 0 SHEET 2 AA3 4 THR B 508 ARG B 514 -1 O CYS B 511 N LYS B 271 SHEET 3 AA3 4 TRP B 493 PRO B 496 -1 N PHE B 495 O MET B 510 SHEET 4 AA3 4 GLN B 486 GLU B 487 -1 N GLN B 486 O HIS B 494 SHEET 1 AA4 5 LEU B 412 THR B 415 0 SHEET 2 AA4 5 LEU B 382 HIS B 386 1 N LEU B 385 O THR B 415 SHEET 3 AA4 5 ALA B 340 VAL B 342 1 N VAL B 342 O LEU B 382 SHEET 4 AA4 5 LEU B 435 VAL B 437 1 O VAL B 437 N ILE B 341 SHEET 5 AA4 5 GLN B 463 VAL B 464 1 O VAL B 464 N LEU B 436 SHEET 1 AA5 2 PHE B 468 VAL B 469 0 SHEET 2 AA5 2 ASN B 472 LEU B 473 -1 N ASN B 472 O VAL B 469 LINK SG CYS A 284 ZN ZN A1001 1555 1555 2.02 LINK NE2 HIS A 494 ZN ZN A1001 1555 1555 2.09 LINK SG CYS A 511 ZN ZN A1001 1555 1555 2.26 LINK SG CYS B 281 ZN ZN B1001 1555 1555 2.93 LINK SG CYS B 284 ZN ZN B1001 1555 1555 2.32 LINK NE2 HIS B 494 ZN ZN B1001 1555 1555 2.18 LINK SG CYS B 511 ZN ZN B1001 1555 1555 2.24 SITE 1 AC1 4 CYS A 281 CYS A 284 HIS A 494 CYS A 511 SITE 1 AC2 4 CYS B 281 CYS B 284 HIS B 494 CYS B 511 CRYST1 69.980 76.993 80.112 72.66 64.11 77.76 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014290 -0.003099 -0.006387 0.00000 SCALE2 0.000000 0.013290 -0.003195 0.00000 SCALE3 0.000000 0.000000 0.014270 0.00000