HEADER HYDROLASE 02-SEP-15 5DJH TITLE STRUCTURE OF M. TUBERCULOSIS CYSQ, A PAP PHOSPHATASE WITH AMP, PO4, TITLE 2 AND 3MG BOUND CAVEAT 5DJH RESIDUES A SER 117 AND A PRO 122 ARE LINKED (INTERVENING CAVEAT 2 5DJH RESIDUES SNGQ ARE OMITTED). COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'-PHOSPHOADENOSINE 5'-PHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSQ, PAP PHOSPHATASE, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, COMPND 5 5-BISPHOSPHONUCLEOSIDE 3'(2')-PHOSPHOHYDROLASE, D-FRUCTOSE-1,6- COMPND 6 BISPHOSPHATE 1-PHOSPHOHYDROLASE, DPNPASE, FRUCTOSE-1,6- COMPND 7 BISPHOSPHATASE, FBPASE, INOSITOL-1-MONOPHOSPHATASE,IMPASE, INOSITOL- COMPND 8 1-PHOSPHATASE; COMPND 9 EC: 3.1.3.7, 3.1.3.11, 3.1.3.25; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYSQ, MT2189; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CYSQ, PAP PHOSPHATASE, AMP, MAGNESIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.FISHER,A.I.ERICKSON REVDAT 4 27-SEP-23 5DJH 1 LINK REVDAT 3 22-NOV-17 5DJH 1 JRNL REMARK REVDAT 2 02-DEC-15 5DJH 1 JRNL REVDAT 1 11-NOV-15 5DJH 0 JRNL AUTH A.I.ERICKSON,R.D.SARSAM,A.J.FISHER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS CYSQ, WITH JRNL TITL 2 SUBSTRATE AND PRODUCTS BOUND. JRNL REF BIOCHEMISTRY V. 54 6830 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26512869 JRNL DOI 10.1021/ACS.BIOCHEM.5B01000 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 42861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1817 - 4.4050 0.95 2637 143 0.1466 0.1548 REMARK 3 2 4.4050 - 3.4971 0.97 2700 134 0.1177 0.1467 REMARK 3 3 3.4971 - 3.0553 0.96 2668 151 0.1388 0.1496 REMARK 3 4 3.0553 - 2.7760 0.97 2655 170 0.1461 0.1640 REMARK 3 5 2.7760 - 2.5771 0.97 2680 162 0.1515 0.1679 REMARK 3 6 2.5771 - 2.4252 0.98 2684 154 0.1540 0.1800 REMARK 3 7 2.4252 - 2.3037 0.97 2724 152 0.1430 0.1770 REMARK 3 8 2.3037 - 2.2035 0.98 2702 144 0.1430 0.1422 REMARK 3 9 2.2035 - 2.1186 0.98 2748 145 0.1402 0.1625 REMARK 3 10 2.1186 - 2.0455 0.98 2739 121 0.1337 0.1639 REMARK 3 11 2.0455 - 1.9816 0.98 2718 155 0.1460 0.1580 REMARK 3 12 1.9816 - 1.9249 0.98 2706 139 0.1453 0.1478 REMARK 3 13 1.9249 - 1.8743 0.98 2698 150 0.1475 0.1572 REMARK 3 14 1.8743 - 1.8285 0.98 2798 129 0.1481 0.1549 REMARK 3 15 1.8285 - 1.7870 0.98 2689 152 0.1490 0.1784 REMARK 3 16 1.7870 - 1.7489 0.98 2721 140 0.1494 0.1826 REMARK 3 17 1.7489 - 1.7140 0.98 2731 111 0.1541 0.1586 REMARK 3 18 1.7140 - 1.6816 0.98 2766 122 0.1563 0.1863 REMARK 3 19 1.6816 - 1.6516 0.97 2716 110 0.1550 0.1653 REMARK 3 20 1.6516 - 1.6236 0.98 2672 151 0.1661 0.2385 REMARK 3 21 1.6236 - 1.5974 0.98 2770 154 0.1614 0.1875 REMARK 3 22 1.5974 - 1.5728 0.97 2676 134 0.1760 0.2216 REMARK 3 23 1.5728 - 1.5497 0.97 2720 143 0.1781 0.2152 REMARK 3 24 1.5497 - 1.5279 0.97 2704 132 0.1929 0.2247 REMARK 3 25 1.5279 - 1.5072 0.97 2673 129 0.1885 0.2398 REMARK 3 26 1.5072 - 1.4876 0.97 2751 133 0.2143 0.2408 REMARK 3 27 1.4876 - 1.4690 0.97 2686 143 0.2244 0.2605 REMARK 3 28 1.4690 - 1.4513 0.96 2623 126 0.2389 0.2586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2042 REMARK 3 ANGLE : 1.173 2804 REMARK 3 CHIRALITY : 0.079 318 REMARK 3 PLANARITY : 0.006 364 REMARK 3 DIHEDRAL : 11.750 747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -16:17) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1471 28.1759 19.8449 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.3956 REMARK 3 T33: 0.2789 T12: -0.0606 REMARK 3 T13: 0.0221 T23: 0.0988 REMARK 3 L TENSOR REMARK 3 L11: 0.4720 L22: 0.5712 REMARK 3 L33: 0.0332 L12: 0.3515 REMARK 3 L13: -0.1156 L23: -0.1272 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: -0.5736 S13: -0.0273 REMARK 3 S21: 0.2473 S22: 0.0596 S23: 0.5227 REMARK 3 S31: 0.1773 S32: -0.5967 S33: 0.0183 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 18:123) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9226 33.0536 21.5984 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0825 REMARK 3 T33: 0.0669 T12: -0.0053 REMARK 3 T13: -0.0010 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.1090 L22: 1.8966 REMARK 3 L33: 0.7665 L12: 0.2818 REMARK 3 L13: 0.3356 L23: 0.0686 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0767 S13: -0.0193 REMARK 3 S21: 0.0399 S22: 0.0378 S23: -0.0738 REMARK 3 S31: 0.0349 S32: -0.0227 S33: -0.0475 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 124:164) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2539 37.8422 5.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1071 T22: 0.1113 REMARK 3 T33: 0.0827 T12: -0.0135 REMARK 3 T13: -0.0207 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.6084 L22: 0.9617 REMARK 3 L33: 0.9660 L12: 0.2234 REMARK 3 L13: -0.8091 L23: -0.5963 REMARK 3 S TENSOR REMARK 3 S11: -0.0352 S12: 0.1445 S13: 0.0060 REMARK 3 S21: -0.0848 S22: 0.0583 S23: 0.0027 REMARK 3 S31: 0.0233 S32: -0.1110 S33: -0.0443 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 165:249) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9542 30.9982 3.1375 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.1105 REMARK 3 T33: 0.1072 T12: 0.0094 REMARK 3 T13: 0.0136 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2141 L22: 0.6200 REMARK 3 L33: 1.4682 L12: 0.3077 REMARK 3 L13: -0.4054 L23: -0.6152 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: 0.0235 S13: -0.0465 REMARK 3 S21: -0.1371 S22: -0.0354 S23: -0.0628 REMARK 3 S31: 0.1324 S32: 0.0924 S33: 0.0393 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 250:267) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6470 28.4347 -9.2652 REMARK 3 T TENSOR REMARK 3 T11: 0.3616 T22: 0.1663 REMARK 3 T33: 0.1156 T12: -0.0078 REMARK 3 T13: 0.0570 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 8.2874 L22: 3.9574 REMARK 3 L33: 5.2623 L12: -1.1707 REMARK 3 L13: -3.8999 L23: 2.9595 REMARK 3 S TENSOR REMARK 3 S11: -0.1406 S12: 0.0834 S13: -0.0953 REMARK 3 S21: -0.3798 S22: 0.0539 S23: -0.0980 REMARK 3 S31: 0.4116 S32: 0.0994 S33: 0.0708 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000212618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL, ASYMMETRIC CUT REMARK 200 4.9650 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012, XDS REMARK 200 NOVEMBER 11, 2013 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42861 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.451 REMARK 200 RESOLUTION RANGE LOW (A) : 38.168 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.530 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.48 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5DJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 0.1 M BIS REMARK 280 -TRIS-HCL, 35% PEG550 MME, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.31800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.59900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.59900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.31800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 SER A 118 REMARK 465 ASN A 119 REMARK 465 GLY A 120 REMARK 465 GLN A 121 REMARK 465 GLY A 147 REMARK 465 ALA A 148 REMARK 465 ALA A 149 REMARK 465 PRO A 150 REMARK 465 ALA A 151 REMARK 465 GLY A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 470 O HOH A 627 2.12 REMARK 500 O ARG A 116 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 74.74 59.75 REMARK 500 SER A 117 -45.37 166.76 REMARK 500 SER A 186 132.62 78.59 REMARK 500 SER A 186 136.09 73.54 REMARK 500 GLN A 208 173.60 177.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 ASP A 91 OD1 91.7 REMARK 620 3 LEU A 93 O 169.8 86.1 REMARK 620 4 PO4 A 305 O2 96.5 96.8 93.7 REMARK 620 5 PO4 A 305 O3 97.6 162.6 87.1 67.6 REMARK 620 6 HOH A 439 O 86.0 99.8 84.6 163.1 95.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE2 REMARK 620 2 PO4 A 305 O4 103.7 REMARK 620 3 HOH A 414 O 89.3 93.0 REMARK 620 4 HOH A 466 O 91.4 89.7 177.0 REMARK 620 5 HOH A 493 O 86.6 169.4 89.5 87.6 REMARK 620 6 HOH A 497 O 165.8 90.2 87.1 91.5 79.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 91 OD2 REMARK 620 2 ASP A 94 OD1 95.2 REMARK 620 3 ASP A 212 OD1 92.3 90.9 REMARK 620 4 AMP A 304 O3' 172.8 91.8 89.6 REMARK 620 5 PO4 A 305 O2 91.0 99.3 169.0 85.9 REMARK 620 6 HOH A 442 O 98.2 163.0 78.2 75.3 91.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DJF RELATED DB: PDB REMARK 900 RELATED ID: 5DJJ RELATED DB: PDB REMARK 900 RELATED ID: 5DJI RELATED DB: PDB REMARK 900 RELATED ID: 5DJG RELATED DB: PDB REMARK 900 RELATED ID: 5DJK RELATED DB: PDB DBREF 5DJH A 2 267 UNP P9WKJ0 CYSQ_MYCTO 2 267 SEQADV 5DJH MET A -21 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH GLY A -20 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH SER A -19 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH SER A -18 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH HIS A -17 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH HIS A -16 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH HIS A -15 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH HIS A -14 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH HIS A -13 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH HIS A -12 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH SER A -10 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH SER A -9 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH GLY A -8 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH LEU A -7 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH VAL A -6 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH PRO A -5 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH ARG A -4 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH GLY A -3 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH SER A -2 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH HIS A -1 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH MET A 0 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJH VAL A 1 UNP P9WKJ0 EXPRESSION TAG SEQRES 1 A 288 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 288 LEU VAL PRO ARG GLY SER HIS MET VAL VAL SER PRO ALA SEQRES 3 A 288 ALA PRO ASP LEU THR ASP ASP LEU THR ASP ALA GLU LEU SEQRES 4 A 288 ALA ALA ASP LEU ALA ALA ASP ALA GLY LYS LEU LEU LEU SEQRES 5 A 288 GLN VAL ARG ALA GLU ILE GLY PHE ASP GLN PRO TRP THR SEQRES 6 A 288 LEU GLY GLU ALA GLY ASP ARG GLN ALA ASN SER LEU LEU SEQRES 7 A 288 LEU ARG ARG LEU GLN ALA GLU ARG PRO GLY ASP ALA VAL SEQRES 8 A 288 LEU SER GLU GLU ALA HIS ASP ASP LEU ALA ARG LEU LYS SEQRES 9 A 288 SER ASP ARG VAL TRP ILE ILE ASP PRO LEU ASP GLY THR SEQRES 10 A 288 ARG GLU PHE SER THR PRO GLY ARG ASP ASP TRP ALA VAL SEQRES 11 A 288 HIS ILE ALA LEU TRP ARG ARG SER SER ASN GLY GLN PRO SEQRES 12 A 288 GLU ILE THR ASP ALA ALA VAL ALA LEU PRO ALA ARG GLY SEQRES 13 A 288 ASN VAL VAL TYR ARG THR ASP THR VAL THR SER GLY ALA SEQRES 14 A 288 ALA PRO ALA GLY VAL PRO GLY THR LEU ARG ILE ALA VAL SEQRES 15 A 288 SER ALA THR ARG PRO PRO ALA VAL LEU HIS ARG ILE ARG SEQRES 16 A 288 GLN THR LEU ALA ILE GLN PRO VAL SER ILE GLY SER ALA SEQRES 17 A 288 GLY ALA LYS ALA MET ALA VAL ILE ASP GLY TYR VAL ASP SEQRES 18 A 288 ALA TYR LEU HIS ALA GLY GLY GLN TRP GLU TRP ASP SER SEQRES 19 A 288 ALA ALA PRO ALA GLY VAL MET LEU ALA ALA GLY MET HIS SEQRES 20 A 288 ALA SER ARG LEU ASP GLY SER PRO LEU ARG TYR ASN GLN SEQRES 21 A 288 LEU ASP PRO TYR LEU PRO ASP LEU LEU MET CYS ARG ALA SEQRES 22 A 288 GLU VAL ALA PRO ILE LEU LEU GLY ALA ILE ALA ASP ALA SEQRES 23 A 288 TRP ARG HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET AMP A 304 23 HET PO4 A 305 5 HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 2 MG 3(MG 2+) FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *269(H2 O) HELIX 1 AA1 THR A 14 GLY A 38 1 25 HELIX 2 AA2 GLN A 41 ARG A 65 1 25 HELIX 3 AA3 LEU A 79 SER A 84 5 6 HELIX 4 AA4 GLY A 95 SER A 100 1 6 HELIX 5 AA5 ALA A 168 ARG A 174 1 7 HELIX 6 AA6 SER A 186 ASP A 196 1 11 HELIX 7 AA7 TRP A 209 ALA A 223 1 15 HELIX 8 AA8 VAL A 254 ALA A 265 1 12 SHEET 1 AA1 5 ALA A 69 SER A 72 0 SHEET 2 AA1 5 ARG A 86 ASP A 94 1 O TRP A 88 N LEU A 71 SHEET 3 AA1 5 ALA A 108 ARG A 115 -1 O ALA A 108 N ASP A 94 SHEET 4 AA1 5 GLU A 123 LEU A 131 -1 O ASP A 126 N LEU A 113 SHEET 5 AA1 5 VAL A 137 ARG A 140 -1 O TYR A 139 N VAL A 129 SHEET 1 AA2 5 ILE A 179 ILE A 184 0 SHEET 2 AA2 5 LEU A 157 SER A 162 1 N ILE A 159 O VAL A 182 SHEET 3 AA2 5 ALA A 201 HIS A 204 1 O ALA A 201 N ALA A 160 SHEET 4 AA2 5 LEU A 247 CYS A 250 -1 O MET A 249 N TYR A 202 SHEET 5 AA2 5 HIS A 226 SER A 228 -1 N HIS A 226 O CYS A 250 LINK OE1 GLU A 73 MG MG A 301 1555 1555 1.96 LINK OE2 GLU A 73 MG MG A 303 1555 1555 2.13 LINK OD1 ASP A 91 MG MG A 301 1555 1555 2.08 LINK OD2 ASP A 91 MG MG A 302 1555 1555 2.06 LINK O LEU A 93 MG MG A 301 1555 1555 2.06 LINK OD1 ASP A 94 MG MG A 302 1555 1555 2.07 LINK OD1 ASP A 212 MG MG A 302 1555 1555 1.98 LINK MG MG A 301 O2 PO4 A 305 1555 1555 2.14 LINK MG MG A 301 O3 PO4 A 305 1555 1555 2.22 LINK MG MG A 301 O HOH A 439 1555 1555 2.06 LINK MG MG A 302 O3' AMP A 304 1555 1555 2.17 LINK MG MG A 302 O2 PO4 A 305 1555 1555 2.00 LINK MG MG A 302 O HOH A 442 1555 1555 2.25 LINK MG MG A 303 O4 PO4 A 305 1555 1555 1.87 LINK MG MG A 303 O HOH A 414 1555 1555 2.15 LINK MG MG A 303 O HOH A 466 1555 1555 2.16 LINK MG MG A 303 O HOH A 493 1555 1655 2.20 LINK MG MG A 303 O HOH A 497 1555 1555 2.07 CISPEP 1 SER A 117 PRO A 122 0 -6.71 SITE 1 AC1 6 GLU A 73 ASP A 91 LEU A 93 MG A 302 SITE 2 AC1 6 PO4 A 305 HOH A 439 SITE 1 AC2 7 ASP A 91 ASP A 94 ASP A 212 MG A 301 SITE 2 AC2 7 AMP A 304 PO4 A 305 HOH A 442 SITE 1 AC3 6 GLU A 73 PO4 A 305 HOH A 414 HOH A 466 SITE 2 AC3 6 HOH A 493 HOH A 497 SITE 1 AC4 23 ASP A 94 SER A 162 ARG A 165 GLY A 185 SITE 2 AC4 23 SER A 186 ALA A 187 LYS A 190 HIS A 204 SITE 3 AC4 23 GLY A 206 GLY A 207 GLN A 208 ASP A 212 SITE 4 AC4 23 MG A 302 PO4 A 305 HOH A 418 HOH A 419 SITE 5 AC4 23 HOH A 436 HOH A 442 HOH A 445 HOH A 454 SITE 6 AC4 23 HOH A 466 HOH A 469 HOH A 529 SITE 1 AC5 15 GLU A 73 ASP A 91 LEU A 93 ASP A 94 SITE 2 AC5 15 GLY A 95 THR A 96 MG A 301 MG A 302 SITE 3 AC5 15 MG A 303 AMP A 304 HOH A 414 HOH A 421 SITE 4 AC5 15 HOH A 442 HOH A 466 HOH A 497 CRYST1 40.636 58.140 101.198 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024609 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009882 0.00000