HEADER HYDROLASE 02-SEP-15 5DJI TITLE STRUCTURE OF M. TUBERCULOSIS CYSQ, A PAP PHOSPHATASE WITH AMP, PO4, TITLE 2 AND 2MG BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'-PHOSPHOADENOSINE 5'-PHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSQ, PAP PHOSPHATASE, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, COMPND 5 5-BISPHOSPHONUCLEOSIDE 3'(2')-PHOSPHOHYDROLASE, D-FRUCTOSE-1,6- COMPND 6 BISPHOSPHATE 1-PHOSPHOHYDROLASE, DPNPASE, FRUCTOSE-1,6- COMPND 7 BISPHOSPHATASE, FBPASE, INOSITOL-1-MONOPHOSPHATASE,IMPASE, INOSITOL- COMPND 8 1-PHOSPHATASE; COMPND 9 EC: 3.1.3.7, 3.1.3.11, 3.1.3.25; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYSQ, MT2189; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CYSQ, PAP PHOSPHATASE, AMP, MAGNESIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.FISHER,A.I.ERICKSON REVDAT 4 27-SEP-23 5DJI 1 REMARK REVDAT 3 22-NOV-17 5DJI 1 JRNL REMARK REVDAT 2 02-DEC-15 5DJI 1 JRNL REVDAT 1 11-NOV-15 5DJI 0 JRNL AUTH A.I.ERICKSON,R.D.SARSAM,A.J.FISHER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS CYSQ, WITH JRNL TITL 2 SUBSTRATE AND PRODUCTS BOUND. JRNL REF BIOCHEMISTRY V. 54 6830 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26512869 JRNL DOI 10.1021/ACS.BIOCHEM.5B01000 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 28723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2625 - 4.4259 0.97 2672 141 0.1526 0.1494 REMARK 3 2 4.4259 - 3.5138 0.97 2675 137 0.1302 0.1681 REMARK 3 3 3.5138 - 3.0698 0.97 2655 150 0.1377 0.1694 REMARK 3 4 3.0698 - 2.7892 0.97 2682 162 0.1483 0.1724 REMARK 3 5 2.7892 - 2.5894 0.98 2668 158 0.1490 0.1668 REMARK 3 6 2.5894 - 2.4367 0.98 2670 159 0.1521 0.1691 REMARK 3 7 2.4367 - 2.3147 0.98 2681 151 0.1398 0.1724 REMARK 3 8 2.3147 - 2.2140 0.98 2691 140 0.1326 0.1379 REMARK 3 9 2.2140 - 2.1287 0.98 2669 147 0.1385 0.1627 REMARK 3 10 2.1287 - 2.0553 0.98 2733 118 0.1275 0.1789 REMARK 3 11 2.0553 - 1.9910 0.98 2682 153 0.1362 0.1498 REMARK 3 12 1.9910 - 1.9341 0.98 2675 138 0.1461 0.1716 REMARK 3 13 1.9341 - 1.8832 0.98 2708 149 0.1435 0.2022 REMARK 3 14 1.8832 - 1.8372 0.98 2689 129 0.1436 0.1868 REMARK 3 15 1.8372 - 1.7955 0.98 2700 150 0.1379 0.1900 REMARK 3 16 1.7955 - 1.7573 0.98 2633 154 0.1439 0.2102 REMARK 3 17 1.7573 - 1.7221 0.97 2749 113 0.1506 0.1708 REMARK 3 18 1.7221 - 1.6896 0.91 2469 128 0.1588 0.1636 REMARK 3 19 1.6896 - 1.6594 0.72 2021 96 0.1706 0.2087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2035 REMARK 3 ANGLE : 1.129 2787 REMARK 3 CHIRALITY : 0.048 314 REMARK 3 PLANARITY : 0.006 361 REMARK 3 DIHEDRAL : 13.177 743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -16:17) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1098 27.3419 19.8372 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.4030 REMARK 3 T33: 0.2936 T12: -0.0484 REMARK 3 T13: 0.0108 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 0.2932 L22: 1.2967 REMARK 3 L33: 0.0562 L12: 0.3844 REMARK 3 L13: -0.0972 L23: 0.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: -0.5880 S13: -0.0613 REMARK 3 S21: 0.2546 S22: 0.0227 S23: 0.6274 REMARK 3 S31: 0.2804 S32: -0.6850 S33: 0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 18:123) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9052 33.0365 21.8764 REMARK 3 T TENSOR REMARK 3 T11: 0.0503 T22: 0.0664 REMARK 3 T33: 0.0588 T12: -0.0039 REMARK 3 T13: -0.0018 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.1893 L22: 1.7650 REMARK 3 L33: 0.7933 L12: 0.2193 REMARK 3 L13: 0.3464 L23: 0.0552 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0721 S13: -0.0249 REMARK 3 S21: 0.0225 S22: 0.0370 S23: -0.0873 REMARK 3 S31: 0.0311 S32: -0.0005 S33: -0.0336 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 124:164) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2061 37.9349 6.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.0909 REMARK 3 T33: 0.0788 T12: -0.0125 REMARK 3 T13: -0.0160 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.9538 L22: 0.7499 REMARK 3 L33: 0.9601 L12: -0.0218 REMARK 3 L13: -0.5839 L23: -0.4722 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.0817 S13: -0.0036 REMARK 3 S21: -0.0846 S22: 0.0343 S23: -0.0026 REMARK 3 S31: -0.0073 S32: -0.0309 S33: -0.0310 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 165:249) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1100 30.9927 3.1188 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1161 REMARK 3 T33: 0.1004 T12: 0.0138 REMARK 3 T13: 0.0153 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.2202 L22: 0.6745 REMARK 3 L33: 1.7329 L12: 0.3882 REMARK 3 L13: -0.5216 L23: -0.9298 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.0124 S13: -0.0497 REMARK 3 S21: -0.1391 S22: -0.0470 S23: -0.0911 REMARK 3 S31: 0.1466 S32: 0.1553 S33: 0.0614 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 250:267) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7401 28.1344 -9.1623 REMARK 3 T TENSOR REMARK 3 T11: 0.3850 T22: 0.1544 REMARK 3 T33: 0.0970 T12: -0.0114 REMARK 3 T13: 0.0852 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 5.3739 L22: 2.6826 REMARK 3 L33: 5.1547 L12: 0.6850 REMARK 3 L13: -2.1765 L23: 1.9831 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.2652 S13: -0.1303 REMARK 3 S21: -0.3984 S22: -0.0158 S23: -0.1737 REMARK 3 S31: 0.4974 S32: 0.0684 S33: 0.0548 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000212616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL, ASYMMETRIC CUT REMARK 200 4.9650 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012, XDS REMARK 200 NOVEMBER 11, 2013 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.659 REMARK 200 RESOLUTION RANGE LOW (A) : 38.252 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : 0.02100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.49 REMARK 200 R MERGE FOR SHELL (I) : 0.09800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5DJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 0.1 M BIS REMARK 280 -TRIS-HCL, 35% PEG550 MME, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.31850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.75500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.75500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.31850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 ASN A 119 REMARK 465 GLY A 120 REMARK 465 GLN A 121 REMARK 465 PRO A 122 REMARK 465 GLY A 147 REMARK 465 ALA A 148 REMARK 465 ALA A 149 REMARK 465 PRO A 150 REMARK 465 ALA A 151 REMARK 465 GLY A 152 REMARK 465 VAL A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 458 O HOH A 624 1.92 REMARK 500 O HOH A 496 O HOH A 570 1.93 REMARK 500 OE1 GLU A 47 O HOH A 401 1.94 REMARK 500 NE2 HIS A -15 O HOH A 402 2.01 REMARK 500 O HOH A 616 O HOH A 694 2.07 REMARK 500 O HOH A 443 O HOH A 453 2.07 REMARK 500 O HOH A 435 O HOH A 444 2.14 REMARK 500 O HOH A 634 O HOH A 688 2.14 REMARK 500 O HOH A 573 O HOH A 659 2.16 REMARK 500 O HOH A 660 O HOH A 687 2.19 REMARK 500 NH1 ARG A 251 OE1 GLU A 253 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -14 -132.64 43.37 REMARK 500 SER A 186 132.38 76.93 REMARK 500 TRP A 266 -111.24 -81.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A -15 HIS A -14 127.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 695 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE1 REMARK 620 2 ASP A 91 OD1 89.3 REMARK 620 3 LEU A 93 O 170.4 87.7 REMARK 620 4 PO4 A 304 O2 96.0 95.8 93.4 REMARK 620 5 PO4 A 304 O3 97.9 163.5 87.3 68.8 REMARK 620 6 HOH A 457 O 87.9 98.8 83.5 164.9 96.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 91 OD2 REMARK 620 2 ASP A 94 OD1 91.8 REMARK 620 3 ASP A 212 OD1 93.7 91.3 REMARK 620 4 AMP A 303 O3' 173.8 94.2 87.7 REMARK 620 5 PO4 A 304 O2 90.3 100.3 167.6 87.2 REMARK 620 6 HOH A 411 O 102.9 161.1 76.1 71.5 91.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DJF RELATED DB: PDB REMARK 900 RELATED ID: 5DJJ RELATED DB: PDB REMARK 900 RELATED ID: 5DJH RELATED DB: PDB REMARK 900 RELATED ID: 5DJG RELATED DB: PDB REMARK 900 RELATED ID: 5DJK RELATED DB: PDB DBREF 5DJI A 2 267 UNP P9WKJ0 CYSQ_MYCTO 2 267 SEQADV 5DJI MET A -21 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI GLY A -20 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI SER A -19 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI SER A -18 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI HIS A -17 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI HIS A -16 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI HIS A -15 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI HIS A -14 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI HIS A -13 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI HIS A -12 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI SER A -11 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI SER A -9 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI GLY A -8 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI LEU A -7 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI VAL A -6 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI PRO A -5 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI ARG A -4 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI GLY A -3 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI SER A -2 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI HIS A -1 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI MET A 0 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJI VAL A 1 UNP P9WKJ0 EXPRESSION TAG SEQRES 1 A 288 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 288 LEU VAL PRO ARG GLY SER HIS MET VAL VAL SER PRO ALA SEQRES 3 A 288 ALA PRO ASP LEU THR ASP ASP LEU THR ASP ALA GLU LEU SEQRES 4 A 288 ALA ALA ASP LEU ALA ALA ASP ALA GLY LYS LEU LEU LEU SEQRES 5 A 288 GLN VAL ARG ALA GLU ILE GLY PHE ASP GLN PRO TRP THR SEQRES 6 A 288 LEU GLY GLU ALA GLY ASP ARG GLN ALA ASN SER LEU LEU SEQRES 7 A 288 LEU ARG ARG LEU GLN ALA GLU ARG PRO GLY ASP ALA VAL SEQRES 8 A 288 LEU SER GLU GLU ALA HIS ASP ASP LEU ALA ARG LEU LYS SEQRES 9 A 288 SER ASP ARG VAL TRP ILE ILE ASP PRO LEU ASP GLY THR SEQRES 10 A 288 ARG GLU PHE SER THR PRO GLY ARG ASP ASP TRP ALA VAL SEQRES 11 A 288 HIS ILE ALA LEU TRP ARG ARG SER SER ASN GLY GLN PRO SEQRES 12 A 288 GLU ILE THR ASP ALA ALA VAL ALA LEU PRO ALA ARG GLY SEQRES 13 A 288 ASN VAL VAL TYR ARG THR ASP THR VAL THR SER GLY ALA SEQRES 14 A 288 ALA PRO ALA GLY VAL PRO GLY THR LEU ARG ILE ALA VAL SEQRES 15 A 288 SER ALA THR ARG PRO PRO ALA VAL LEU HIS ARG ILE ARG SEQRES 16 A 288 GLN THR LEU ALA ILE GLN PRO VAL SER ILE GLY SER ALA SEQRES 17 A 288 GLY ALA LYS ALA MET ALA VAL ILE ASP GLY TYR VAL ASP SEQRES 18 A 288 ALA TYR LEU HIS ALA GLY GLY GLN TRP GLU TRP ASP SER SEQRES 19 A 288 ALA ALA PRO ALA GLY VAL MET LEU ALA ALA GLY MET HIS SEQRES 20 A 288 ALA SER ARG LEU ASP GLY SER PRO LEU ARG TYR ASN GLN SEQRES 21 A 288 LEU ASP PRO TYR LEU PRO ASP LEU LEU MET CYS ARG ALA SEQRES 22 A 288 GLU VAL ALA PRO ILE LEU LEU GLY ALA ILE ALA ASP ALA SEQRES 23 A 288 TRP ARG HET MG A 301 1 HET MG A 302 1 HET AMP A 303 23 HET PO4 A 304 5 HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 2 MG 2(MG 2+) FORMUL 4 AMP C10 H14 N5 O7 P FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *295(H2 O) HELIX 1 AA1 THR A 14 GLY A 38 1 25 HELIX 2 AA2 GLN A 41 ARG A 65 1 25 HELIX 3 AA3 LEU A 79 SER A 84 5 6 HELIX 4 AA4 GLY A 95 SER A 100 1 6 HELIX 5 AA5 ALA A 168 ARG A 174 1 7 HELIX 6 AA6 SER A 186 ASP A 196 1 11 HELIX 7 AA7 TRP A 209 ALA A 223 1 15 HELIX 8 AA8 VAL A 254 TRP A 266 1 13 SHEET 1 AA1 5 ALA A 69 SER A 72 0 SHEET 2 AA1 5 ARG A 86 ASP A 94 1 O TRP A 88 N LEU A 71 SHEET 3 AA1 5 ALA A 108 ARG A 115 -1 O TRP A 114 N VAL A 87 SHEET 4 AA1 5 ILE A 124 LEU A 131 -1 O ASP A 126 N LEU A 113 SHEET 5 AA1 5 VAL A 137 ARG A 140 -1 O TYR A 139 N VAL A 129 SHEET 1 AA2 5 ILE A 179 ILE A 184 0 SHEET 2 AA2 5 LEU A 157 SER A 162 1 N LEU A 157 O GLN A 180 SHEET 3 AA2 5 ALA A 201 HIS A 204 1 O ALA A 201 N ALA A 160 SHEET 4 AA2 5 LEU A 247 CYS A 250 -1 O MET A 249 N TYR A 202 SHEET 5 AA2 5 HIS A 226 SER A 228 -1 N HIS A 226 O CYS A 250 LINK OE1 GLU A 73 MG MG A 301 1555 1555 2.03 LINK OD1 ASP A 91 MG MG A 301 1555 1555 2.07 LINK OD2 ASP A 91 MG MG A 302 1555 1555 2.08 LINK O LEU A 93 MG MG A 301 1555 1555 2.07 LINK OD1 ASP A 94 MG MG A 302 1555 1555 2.04 LINK OD1 ASP A 212 MG MG A 302 1555 1555 1.95 LINK MG MG A 301 O2 PO4 A 304 1555 1555 2.20 LINK MG MG A 301 O3 PO4 A 304 1555 1555 2.19 LINK MG MG A 301 O HOH A 457 1555 1555 2.05 LINK MG MG A 302 O3' AMP A 303 1555 1555 2.12 LINK MG MG A 302 O2 PO4 A 304 1555 1555 1.97 LINK MG MG A 302 O HOH A 411 1555 1555 2.23 SITE 1 AC1 5 GLU A 73 ASP A 91 LEU A 93 PO4 A 304 SITE 2 AC1 5 HOH A 457 SITE 1 AC2 6 ASP A 91 ASP A 94 ASP A 212 AMP A 303 SITE 2 AC2 6 PO4 A 304 HOH A 411 SITE 1 AC3 23 ASP A 94 SER A 162 ARG A 165 GLY A 185 SITE 2 AC3 23 SER A 186 ALA A 187 LYS A 190 HIS A 204 SITE 3 AC3 23 GLY A 206 GLY A 207 GLN A 208 ASP A 212 SITE 4 AC3 23 MG A 302 PO4 A 304 HOH A 411 HOH A 413 SITE 5 AC3 23 HOH A 421 HOH A 428 HOH A 446 HOH A 467 SITE 6 AC3 23 HOH A 488 HOH A 513 HOH A 548 SITE 1 AC4 13 GLU A 73 ASP A 91 LEU A 93 ASP A 94 SITE 2 AC4 13 GLY A 95 THR A 96 MG A 301 MG A 302 SITE 3 AC4 13 AMP A 303 HOH A 411 HOH A 432 HOH A 443 SITE 4 AC4 13 HOH A 485 CRYST1 40.637 58.200 101.510 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009851 0.00000