HEADER HYDROLASE/HYDROLASE INHIBITOR 02-SEP-15 5DJK TITLE STRUCTURE OF M. TUBERCULOSIS CYSQ, A PAP PHOSPHATASE WITH PO4 AND 2CA TITLE 2 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'-PHOSPHOADENOSINE 5'-PHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSQ, PAP PHOSPHATASE, 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, COMPND 5 5-BISPHOSPHONUCLEOSIDE 3'(2')-PHOSPHOHYDROLASE, D-FRUCTOSE-1,6- COMPND 6 BISPHOSPHATE 1-PHOSPHOHYDROLASE, DPNPASE, FRUCTOSE-1,6- COMPND 7 BISPHOSPHATASE, FBPASE, INOSITOL-1-MONOPHOSPHATASE,IMPASE, INOSITOL- COMPND 8 1-PHOSPHATASE; COMPND 9 EC: 3.1.3.7, 3.1.3.11, 3.1.3.25; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYSQ, MT2189; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CYSQ, PAP PHOSPHATASE, CALCIUM, INHIBITOR, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.FISHER,A.I.ERICKSON REVDAT 3 27-SEP-23 5DJK 1 JRNL REMARK LINK REVDAT 2 02-DEC-15 5DJK 1 JRNL REVDAT 1 11-NOV-15 5DJK 0 JRNL AUTH A.I.ERICKSON,R.D.SARSAM,A.J.FISHER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS CYSQ, WITH JRNL TITL 2 SUBSTRATE AND PRODUCTS BOUND. JRNL REF BIOCHEMISTRY V. 54 6830 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26512869 JRNL DOI 10.1021/ACS.BIOCHEM.5B01000 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 22686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5338 - 4.5301 1.00 2528 129 0.1574 0.1722 REMARK 3 2 4.5301 - 3.5973 0.99 2506 145 0.1257 0.1581 REMARK 3 3 3.5973 - 3.1430 0.99 2536 118 0.1362 0.1920 REMARK 3 4 3.1430 - 2.8559 0.99 2465 156 0.1535 0.1891 REMARK 3 5 2.8559 - 2.6513 0.99 2510 151 0.1523 0.1785 REMARK 3 6 2.6513 - 2.4950 0.99 2495 164 0.1639 0.2094 REMARK 3 7 2.4950 - 2.3701 0.99 2501 117 0.1559 0.1872 REMARK 3 8 2.3701 - 2.2670 0.99 2533 155 0.1493 0.2116 REMARK 3 9 2.2670 - 2.1797 0.99 2516 142 0.1515 0.1565 REMARK 3 10 2.1797 - 2.1045 0.99 2518 122 0.1573 0.2371 REMARK 3 11 2.1045 - 2.0388 0.99 2554 121 0.1638 0.1820 REMARK 3 12 2.0388 - 1.9805 0.99 2485 131 0.1646 0.1817 REMARK 3 13 1.9805 - 1.9284 1.00 2534 127 0.1784 0.2316 REMARK 3 14 1.9284 - 1.8813 0.99 2490 142 0.1988 0.2350 REMARK 3 15 1.8813 - 1.8385 0.99 2500 129 0.2186 0.2446 REMARK 3 16 1.8385 - 1.7994 0.96 2472 127 0.2315 0.2261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1958 REMARK 3 ANGLE : 1.065 2678 REMARK 3 CHIRALITY : 0.043 303 REMARK 3 PLANARITY : 0.004 353 REMARK 3 DIHEDRAL : 12.325 713 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 12:17) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5838 29.7973 18.9735 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.2195 REMARK 3 T33: 0.2030 T12: -0.0201 REMARK 3 T13: -0.0018 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.0270 L22: 0.0467 REMARK 3 L33: 0.7352 L12: -0.0122 REMARK 3 L13: 0.1210 L23: 0.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.0908 S12: -0.0865 S13: -0.2126 REMARK 3 S21: 0.0612 S22: -0.1187 S23: 0.4027 REMARK 3 S31: -0.0406 S32: -0.3838 S33: -0.0218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 18:123) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9542 33.2418 21.9000 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0960 REMARK 3 T33: 0.1027 T12: -0.0044 REMARK 3 T13: -0.0023 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.6436 L22: 1.0299 REMARK 3 L33: 0.3406 L12: 0.1091 REMARK 3 L13: 0.2263 L23: 0.1714 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.0723 S13: -0.0460 REMARK 3 S21: 0.0225 S22: 0.0569 S23: -0.1171 REMARK 3 S31: 0.0235 S32: 0.0161 S33: 0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 124:164) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0733 38.8176 4.6503 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.1183 REMARK 3 T33: 0.0897 T12: -0.0098 REMARK 3 T13: 0.0018 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.4767 L22: 0.2611 REMARK 3 L33: 0.2803 L12: -0.2990 REMARK 3 L13: 0.1162 L23: -0.0910 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.1253 S13: 0.0300 REMARK 3 S21: -0.1463 S22: 0.0010 S23: -0.0144 REMARK 3 S31: -0.0971 S32: -0.1108 S33: 0.0546 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 165:249) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1086 30.9152 2.7828 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.1204 REMARK 3 T33: 0.1123 T12: 0.0076 REMARK 3 T13: 0.0382 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.2183 L22: 0.3306 REMARK 3 L33: 0.7670 L12: 0.4158 REMARK 3 L13: -0.5483 L23: -0.5333 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.0053 S13: -0.0333 REMARK 3 S21: -0.1486 S22: -0.0529 S23: -0.1061 REMARK 3 S31: 0.0603 S32: 0.0925 S33: -0.0127 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 250:267) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0817 28.4257 -9.3481 REMARK 3 T TENSOR REMARK 3 T11: 0.5560 T22: 0.2569 REMARK 3 T33: 0.0367 T12: -0.1229 REMARK 3 T13: 0.2214 T23: -0.0956 REMARK 3 L TENSOR REMARK 3 L11: 0.4601 L22: 0.1292 REMARK 3 L33: 1.0160 L12: 0.0507 REMARK 3 L13: -0.6531 L23: -0.1754 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: 0.3098 S13: -0.0979 REMARK 3 S21: -0.2829 S22: 0.1442 S23: -0.0648 REMARK 3 S31: 0.1600 S32: -0.2921 S33: 0.1865 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000212626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL, ASYMMETRIC CUT REMARK 200 4.9650 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 11, 2013 REMARK 200 DATA SCALING SOFTWARE : XSCALE JULY 4, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22686 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 31.529 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.540 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.55 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5DJF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CALCIUM CHLORIDE, 0.1 M BIS REMARK 280 -TRIS-HCL, 30% PEG550 MME, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.12850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.70750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.11250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.70750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.12850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.11250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 SER A 117 REMARK 465 SER A 118 REMARK 465 ASN A 119 REMARK 465 GLY A 120 REMARK 465 GLN A 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 145 O HOH A 401 1.91 REMARK 500 O HOH A 551 O HOH A 553 1.94 REMARK 500 O HOH A 487 O HOH A 587 2.03 REMARK 500 O HOH A 580 O HOH A 582 2.07 REMARK 500 OG1 THR A 156 O HOH A 402 2.07 REMARK 500 OD2 ASP A 85 O HOH A 403 2.08 REMARK 500 O HOH A 428 O HOH A 601 2.13 REMARK 500 OG1 THR A 164 O HOH A 404 2.15 REMARK 500 NZ LYS A 190 O HOH A 405 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH A 610 3545 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 163 47.23 -80.99 REMARK 500 SER A 186 130.59 76.55 REMARK 500 PRO A 242 38.47 -81.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 55 OG REMARK 620 2 HOH A 434 O 75.4 REMARK 620 3 HOH A 453 O 75.5 82.7 REMARK 620 4 HOH A 475 O 80.0 70.7 147.6 REMARK 620 5 HOH A 553 O 140.6 86.1 67.8 126.4 REMARK 620 6 HOH A 590 O 145.7 126.8 127.8 83.9 72.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE2 REMARK 620 2 ASP A 91 OD1 88.0 REMARK 620 3 ASP A 91 OD2 80.9 46.3 REMARK 620 4 LEU A 93 O 167.2 79.6 92.7 REMARK 620 5 PO4 A 304 O2 96.4 115.1 70.5 91.7 REMARK 620 6 PO4 A 304 O3 104.3 166.9 130.3 88.3 59.9 REMARK 620 7 HOH A 422 O 91.3 90.9 136.4 85.8 153.1 93.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 91 OD2 REMARK 620 2 ASP A 94 OD1 92.5 REMARK 620 3 ASP A 212 OD1 97.1 92.7 REMARK 620 4 PO4 A 304 O2 87.0 96.2 170.1 REMARK 620 5 HOH A 416 O 99.3 167.3 81.3 89.1 REMARK 620 6 HOH A 574 O 169.4 84.1 93.0 83.5 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DJF RELATED DB: PDB REMARK 900 RELATED ID: 5DJJ RELATED DB: PDB REMARK 900 RELATED ID: 5DJI RELATED DB: PDB REMARK 900 RELATED ID: 5DJH RELATED DB: PDB REMARK 900 RELATED ID: 5DJG RELATED DB: PDB DBREF 5DJK A 2 267 UNP P9WKJ0 CYSQ_MYCTO 2 267 SEQADV 5DJK MET A -20 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK GLY A -19 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK SER A -18 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK SER A -17 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK HIS A -16 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK HIS A -15 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK HIS A -14 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK HIS A -13 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK HIS A -12 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK HIS A -11 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK SER A -10 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK SER A -9 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK GLY A -8 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK LEU A -7 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK VAL A -6 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK PRO A -5 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK ARG A -4 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK GLY A -3 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK SER A -2 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK HIS A -1 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK MET A 0 UNP P9WKJ0 EXPRESSION TAG SEQADV 5DJK VAL A 1 UNP P9WKJ0 EXPRESSION TAG SEQRES 1 A 288 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 288 LEU VAL PRO ARG GLY SER HIS MET VAL VAL SER PRO ALA SEQRES 3 A 288 ALA PRO ASP LEU THR ASP ASP LEU THR ASP ALA GLU LEU SEQRES 4 A 288 ALA ALA ASP LEU ALA ALA ASP ALA GLY LYS LEU LEU LEU SEQRES 5 A 288 GLN VAL ARG ALA GLU ILE GLY PHE ASP GLN PRO TRP THR SEQRES 6 A 288 LEU GLY GLU ALA GLY ASP ARG GLN ALA ASN SER LEU LEU SEQRES 7 A 288 LEU ARG ARG LEU GLN ALA GLU ARG PRO GLY ASP ALA VAL SEQRES 8 A 288 LEU SER GLU GLU ALA HIS ASP ASP LEU ALA ARG LEU LYS SEQRES 9 A 288 SER ASP ARG VAL TRP ILE ILE ASP PRO LEU ASP GLY THR SEQRES 10 A 288 ARG GLU PHE SER THR PRO GLY ARG ASP ASP TRP ALA VAL SEQRES 11 A 288 HIS ILE ALA LEU TRP ARG ARG SER SER ASN GLY GLN PRO SEQRES 12 A 288 GLU ILE THR ASP ALA ALA VAL ALA LEU PRO ALA ARG GLY SEQRES 13 A 288 ASN VAL VAL TYR ARG THR ASP THR VAL THR SER GLY ALA SEQRES 14 A 288 ALA PRO ALA GLY VAL PRO GLY THR LEU ARG ILE ALA VAL SEQRES 15 A 288 SER ALA THR ARG PRO PRO ALA VAL LEU HIS ARG ILE ARG SEQRES 16 A 288 GLN THR LEU ALA ILE GLN PRO VAL SER ILE GLY SER ALA SEQRES 17 A 288 GLY ALA LYS ALA MET ALA VAL ILE ASP GLY TYR VAL ASP SEQRES 18 A 288 ALA TYR LEU HIS ALA GLY GLY GLN TRP GLU TRP ASP SER SEQRES 19 A 288 ALA ALA PRO ALA GLY VAL MET LEU ALA ALA GLY MET HIS SEQRES 20 A 288 ALA SER ARG LEU ASP GLY SER PRO LEU ARG TYR ASN GLN SEQRES 21 A 288 LEU ASP PRO TYR LEU PRO ASP LEU LEU MET CYS ARG ALA SEQRES 22 A 288 GLU VAL ALA PRO ILE LEU LEU GLY ALA ILE ALA ASP ALA SEQRES 23 A 288 TRP ARG HET CA A 301 1 HET CA A 302 1 HET NA A 303 1 HET PO4 A 304 5 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 CA 2(CA 2+) FORMUL 4 NA NA 1+ FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *219(H2 O) HELIX 1 AA1 THR A 14 GLY A 38 1 25 HELIX 2 AA2 GLN A 41 ARG A 65 1 25 HELIX 3 AA3 LEU A 79 SER A 84 5 6 HELIX 4 AA4 GLY A 95 SER A 100 1 6 HELIX 5 AA5 PRO A 167 ARG A 174 1 8 HELIX 6 AA6 SER A 186 ASP A 196 1 11 HELIX 7 AA7 TRP A 209 ALA A 223 1 15 HELIX 8 AA8 VAL A 254 ALA A 265 1 12 SHEET 1 AA1 5 ALA A 69 SER A 72 0 SHEET 2 AA1 5 ARG A 86 ASP A 94 1 O TRP A 88 N LEU A 71 SHEET 3 AA1 5 ALA A 108 ARG A 115 -1 O TRP A 114 N VAL A 87 SHEET 4 AA1 5 GLU A 123 LEU A 131 -1 O ASP A 126 N LEU A 113 SHEET 5 AA1 5 VAL A 137 ARG A 140 -1 O TYR A 139 N VAL A 129 SHEET 1 AA2 5 ILE A 179 SER A 183 0 SHEET 2 AA2 5 LEU A 157 VAL A 161 1 N ILE A 159 O VAL A 182 SHEET 3 AA2 5 ALA A 201 HIS A 204 1 O ALA A 201 N ALA A 160 SHEET 4 AA2 5 LEU A 247 CYS A 250 -1 O MET A 249 N TYR A 202 SHEET 5 AA2 5 HIS A 226 SER A 228 -1 N HIS A 226 O CYS A 250 LINK OG BSER A 55 NA NA A 303 1555 1555 2.58 LINK OE2 GLU A 73 CA CA A 301 1555 1555 2.17 LINK OD1 ASP A 91 CA CA A 301 1555 1555 2.37 LINK OD2 ASP A 91 CA CA A 301 1555 1555 2.98 LINK OD2 ASP A 91 CA CA A 302 1555 1555 2.33 LINK O LEU A 93 CA CA A 301 1555 1555 2.29 LINK OD1 ASP A 94 CA CA A 302 1555 1555 2.34 LINK OD1 ASP A 212 CA CA A 302 1555 1555 2.22 LINK CA CA A 301 O2 PO4 A 304 1555 1555 2.43 LINK CA CA A 301 O3 PO4 A 304 1555 1555 2.50 LINK CA CA A 301 O HOH A 422 1555 1555 2.34 LINK CA CA A 302 O2 PO4 A 304 1555 1555 2.24 LINK CA CA A 302 O HOH A 416 1555 1555 2.50 LINK CA CA A 302 O HOH A 574 1555 1555 2.50 LINK NA NA A 303 O HOH A 434 1555 1555 2.55 LINK NA NA A 303 O HOH A 453 1555 2565 2.59 LINK NA NA A 303 O HOH A 475 1555 1555 2.44 LINK NA NA A 303 O HOH A 553 1555 2565 2.55 LINK NA NA A 303 O HOH A 590 1555 2565 2.32 SITE 1 AC1 5 GLU A 73 ASP A 91 LEU A 93 PO4 A 304 SITE 2 AC1 5 HOH A 422 SITE 1 AC2 6 ASP A 91 ASP A 94 ASP A 212 PO4 A 304 SITE 2 AC2 6 HOH A 416 HOH A 574 SITE 1 AC3 6 SER A 55 HOH A 434 HOH A 453 HOH A 475 SITE 2 AC3 6 HOH A 553 HOH A 590 SITE 1 AC4 10 GLU A 73 ASP A 91 LEU A 93 ASP A 94 SITE 2 AC4 10 GLY A 95 THR A 96 CA A 301 CA A 302 SITE 3 AC4 10 HOH A 512 HOH A 559 CRYST1 40.257 58.225 101.415 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009860 0.00000