HEADER IMMUNE SYSTEM 02-SEP-15 5DJZ TITLE FC HETERODIMER DESIGN 7.8 D399M/Y407A + T366V/K409V COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 104-330; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 104-330; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: FC-III PEPTIDE; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: IGHG1; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630; SOURCE 23 OTHER_DETAILS: CPC SCIENTIFIC INC., SUNNYVALE CA KEYWDS HETERODIMER, IMMUNOGLOBULIN, CH3, FC, BISPECIFIC ANTIBODY, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.ATWELL,A.LEAVER-FAY,K.J.FRONING,H.ALDAZ,A.PUSTILNIK,F.LU,F.HUANG, AUTHOR 2 R.YUAN,S.H.DHANANI,A.K.CHAMBERLAIN,J.R.FITCHETT,B.GUTIERREZ, AUTHOR 3 J.HENDLE,S.J.DEMAREST,B.KUHLMAN REVDAT 4 29-JUL-20 5DJZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 22-NOV-17 5DJZ 1 JRNL REMARK REVDAT 2 27-APR-16 5DJZ 1 JRNL REVDAT 1 30-MAR-16 5DJZ 0 JRNL AUTH A.LEAVER-FAY,K.J.FRONING,S.ATWELL,H.ALDAZ,A.PUSTILNIK,F.LU, JRNL AUTH 2 F.HUANG,R.YUAN,S.HASSANALI,A.K.CHAMBERLAIN,J.R.FITCHETT, JRNL AUTH 3 S.J.DEMAREST,B.KUHLMAN JRNL TITL COMPUTATIONALLY DESIGNED BISPECIFIC ANTIBODIES USING JRNL TITL 2 NEGATIVE STATE REPERTOIRES. JRNL REF STRUCTURE V. 24 641 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26996964 JRNL DOI 10.1016/J.STR.2016.02.013 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0017 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 24894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1744 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.45000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2582 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3545 ; 1.590 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 6.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;36.561 ;24.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;14.834 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.927 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1910 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DIAMOND (111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26283 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.814 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 18.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6K + 10MM MAGNESIUM CHLORIDE + REMARK 280 50MM POTASSIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.30550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.85350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.81450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.85350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.30550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.81450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 221 REMARK 465 LYS A 222 REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 SER A 444 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 SER B 216 REMARK 465 GLY B 217 REMARK 465 SER B 218 REMARK 465 GLY B 219 REMARK 465 SER B 220 REMARK 465 ASP B 221 REMARK 465 LYS B 222 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 GLY B 237 REMARK 465 PRO B 238 REMARK 465 SER B 239 REMARK 465 VAL B 240 REMARK 465 PHE B 241 REMARK 465 LEU B 242 REMARK 465 PHE B 243 REMARK 465 PRO B 244 REMARK 465 PRO B 245 REMARK 465 LYS B 246 REMARK 465 PRO B 247 REMARK 465 LYS B 248 REMARK 465 ASP B 249 REMARK 465 THR B 250 REMARK 465 LEU B 251 REMARK 465 GLU B 252 REMARK 465 ALA B 253 REMARK 465 SER B 254 REMARK 465 ARG B 255 REMARK 465 THR B 256 REMARK 465 PRO B 257 REMARK 465 GLU B 258 REMARK 465 VAL B 259 REMARK 465 THR B 260 REMARK 465 CYS B 261 REMARK 465 VAL B 262 REMARK 465 VAL B 263 REMARK 465 VAL B 264 REMARK 465 ASP B 265 REMARK 465 VAL B 266 REMARK 465 SER B 267 REMARK 465 HIS B 268 REMARK 465 GLU B 269 REMARK 465 ASP B 270 REMARK 465 PRO B 271 REMARK 465 GLU B 272 REMARK 465 VAL B 273 REMARK 465 LYS B 274 REMARK 465 PHE B 275 REMARK 465 ASN B 276 REMARK 465 TRP B 277 REMARK 465 TYR B 278 REMARK 465 VAL B 279 REMARK 465 ASP B 280 REMARK 465 GLY B 281 REMARK 465 VAL B 282 REMARK 465 GLU B 283 REMARK 465 VAL B 284 REMARK 465 HIS B 285 REMARK 465 ASN B 286 REMARK 465 ALA B 287 REMARK 465 LYS B 288 REMARK 465 THR B 289 REMARK 465 LYS B 290 REMARK 465 PRO B 291 REMARK 465 ARG B 292 REMARK 465 GLU B 293 REMARK 465 GLU B 294 REMARK 465 GLN B 295 REMARK 465 TYR B 296 REMARK 465 ASN B 297 REMARK 465 SER B 298 REMARK 465 THR B 299 REMARK 465 TYR B 300 REMARK 465 ARG B 301 REMARK 465 VAL B 302 REMARK 465 VAL B 303 REMARK 465 SER B 304 REMARK 465 VAL B 305 REMARK 465 LEU B 306 REMARK 465 THR B 307 REMARK 465 VAL B 308 REMARK 465 LEU B 309 REMARK 465 HIS B 310 REMARK 465 GLN B 311 REMARK 465 ASP B 312 REMARK 465 TRP B 313 REMARK 465 LEU B 314 REMARK 465 ASN B 315 REMARK 465 GLY B 316 REMARK 465 LYS B 317 REMARK 465 GLU B 318 REMARK 465 TYR B 319 REMARK 465 LYS B 320 REMARK 465 CYS B 321 REMARK 465 LYS B 322 REMARK 465 VAL B 323 REMARK 465 SER B 324 REMARK 465 ASN B 325 REMARK 465 LYS B 326 REMARK 465 ALA B 327 REMARK 465 LEU B 328 REMARK 465 PRO B 329 REMARK 465 ALA B 330 REMARK 465 PRO B 331 REMARK 465 ILE B 332 REMARK 465 GLU B 333 REMARK 465 LYS B 334 REMARK 465 THR B 335 REMARK 465 ILE B 336 REMARK 465 SER B 337 REMARK 465 LYS B 338 REMARK 465 ALA B 339 REMARK 465 LYS B 340 REMARK 465 MET B 428 REMARK 465 HIS B 429 REMARK 465 GLU B 430 REMARK 465 ALA B 431 REMARK 465 LEU B 432 REMARK 465 HIS B 433 REMARK 465 ASN B 434 REMARK 465 ALA B 435 REMARK 465 TYR B 436 REMARK 465 THR B 437 REMARK 465 GLN B 438 REMARK 465 LYS B 439 REMARK 465 SER B 440 REMARK 465 LEU B 441 REMARK 465 SER B 442 REMARK 465 LEU B 443 REMARK 465 SER B 444 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 465 LYS B 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 274 CD CE NZ REMARK 470 LYS A 288 CE NZ REMARK 470 LYS A 290 CE NZ REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 GLN A 311 CG CD OE1 NE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 ARG A 344 CD NE CZ NH1 NH2 REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 360 CE NZ REMARK 470 GLN A 386 CG CD OE1 NE2 REMARK 470 ASN A 389 CG OD1 ND2 REMARK 470 LYS A 414 CE NZ REMARK 470 GLN B 342 CG CD OE1 NE2 REMARK 470 GLU B 380 CG CD OE1 OE2 REMARK 470 ASN B 384 CG OD1 ND2 REMARK 470 GLN B 386 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 360 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 360 CG LYS A 360 CD -0.664 REMARK 500 HIS A 435 CG HIS A 435 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 360 CB - CG - CD ANGL. DEV. = 34.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 384 49.28 33.71 REMARK 500 ASN B 384 60.64 37.30 REMARK 500 ASN B 421 132.07 -32.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DI8 RELATED DB: PDB REMARK 900 RELATED ID: 5DJ0 RELATED DB: PDB REMARK 900 RELATED ID: 5DJ2 RELATED DB: PDB REMARK 900 RELATED ID: 5DJ6 RELATED DB: PDB REMARK 900 RELATED ID: 5DJ8 RELATED DB: PDB REMARK 900 RELATED ID: 5DJA RELATED DB: PDB REMARK 900 RELATED ID: 5DJC RELATED DB: PDB REMARK 900 RELATED ID: 5DJD RELATED DB: PDB REMARK 900 RELATED ID: 5DJX RELATED DB: PDB REMARK 900 RELATED ID: 5DJY RELATED DB: PDB REMARK 900 RELATED ID: 5DK0 RELATED DB: PDB REMARK 900 RELATED ID: 5DK2 RELATED DB: PDB REMARK 900 RELATED ID: 5DVK RELATED DB: PDB REMARK 900 RELATED ID: 5DVL RELATED DB: PDB REMARK 900 RELATED ID: 5DVM RELATED DB: PDB REMARK 900 RELATED ID: 5DVN RELATED DB: PDB REMARK 900 RELATED ID: 5DVO RELATED DB: PDB DBREF 5DJZ A 221 447 UNP P01857 IGHG1_HUMAN 104 330 DBREF 5DJZ B 221 447 UNP P01857 IGHG1_HUMAN 104 330 DBREF 5DJZ C 1 13 PDB 5DJZ 5DJZ 1 13 SEQADV 5DJZ GLU A 356 UNP P01857 ASP 239 VARIANT SEQADV 5DJZ MET A 358 UNP P01857 LEU 241 VARIANT SEQADV 5DJZ MET A 399 UNP P01857 ASP 282 ENGINEERED MUTATION SEQADV 5DJZ ALA A 407 UNP P01857 TYR 290 ENGINEERED MUTATION SEQADV 5DJZ HIS B 208 UNP P01857 EXPRESSION TAG SEQADV 5DJZ HIS B 209 UNP P01857 EXPRESSION TAG SEQADV 5DJZ HIS B 210 UNP P01857 EXPRESSION TAG SEQADV 5DJZ HIS B 211 UNP P01857 EXPRESSION TAG SEQADV 5DJZ HIS B 212 UNP P01857 EXPRESSION TAG SEQADV 5DJZ HIS B 213 UNP P01857 EXPRESSION TAG SEQADV 5DJZ HIS B 214 UNP P01857 EXPRESSION TAG SEQADV 5DJZ HIS B 215 UNP P01857 EXPRESSION TAG SEQADV 5DJZ SER B 216 UNP P01857 EXPRESSION TAG SEQADV 5DJZ GLY B 217 UNP P01857 EXPRESSION TAG SEQADV 5DJZ SER B 218 UNP P01857 EXPRESSION TAG SEQADV 5DJZ GLY B 219 UNP P01857 EXPRESSION TAG SEQADV 5DJZ SER B 220 UNP P01857 EXPRESSION TAG SEQADV 5DJZ GLU B 252 UNP P01857 MET 135 ENGINEERED MUTATION SEQADV 5DJZ ALA B 253 UNP P01857 ILE 136 ENGINEERED MUTATION SEQADV 5DJZ GLU B 356 UNP P01857 ASP 239 VARIANT SEQADV 5DJZ MET B 358 UNP P01857 LEU 241 VARIANT SEQADV 5DJZ VAL B 366 UNP P01857 THR 249 ENGINEERED MUTATION SEQADV 5DJZ VAL B 409 UNP P01857 LYS 292 ENGINEERED MUTATION SEQADV 5DJZ ALA B 435 UNP P01857 HIS 318 ENGINEERED MUTATION SEQRES 1 A 227 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 A 227 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 A 227 PRO LYS ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 A 227 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 A 227 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 A 227 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 A 227 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 A 227 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 A 227 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 A 227 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR SEQRES 11 A 227 LEU PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SEQRES 12 A 227 SER LEU THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP SEQRES 13 A 227 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 14 A 227 ASN TYR LYS THR THR PRO PRO VAL LEU MET SER ASP GLY SEQRES 15 A 227 SER PHE PHE LEU ALA SER LYS LEU THR VAL ASP LYS SER SEQRES 16 A 227 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 17 A 227 HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SEQRES 18 A 227 SER LEU SER PRO GLY LYS SEQRES 1 B 240 HIS HIS HIS HIS HIS HIS HIS HIS SER GLY SER GLY SER SEQRES 2 B 240 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 3 B 240 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 4 B 240 PRO LYS ASP THR LEU GLU ALA SER ARG THR PRO GLU VAL SEQRES 5 B 240 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 6 B 240 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 7 B 240 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 8 B 240 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 9 B 240 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 10 B 240 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 11 B 240 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR SEQRES 12 B 240 LEU PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SEQRES 13 B 240 SER LEU VAL CYS LEU VAL LYS GLY PHE TYR PRO SER ASP SEQRES 14 B 240 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 15 B 240 ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SEQRES 16 B 240 SER PHE PHE LEU TYR SER VAL LEU THR VAL ASP LYS SER SEQRES 17 B 240 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 18 B 240 HIS GLU ALA LEU HIS ASN ALA TYR THR GLN LYS SER LEU SEQRES 19 B 240 SER LEU SER PRO GLY LYS SEQRES 1 C 13 ASP CYS ALA TRP HIS LEU GLY GLU LEU VAL TRP CYS THR HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET GAL D 6 11 HET MAN D 7 11 HET FUC D 8 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 4 GAL C6 H12 O6 FORMUL 4 FUC C6 H12 O5 FORMUL 5 HOH *82(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 LYS A 360 5 7 HELIX 4 AA4 LYS A 414 GLN A 419 1 6 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 SER B 354 LYS B 360 5 7 HELIX 7 AA7 SER B 415 GLN B 419 5 5 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 SER A 267 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 THR A 299 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 SER A 267 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 THR A 299 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 322 N ASN A 276 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA5 4 PHE A 404 ASP A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA6 4 GLN A 386 GLU A 388 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 PHE A 423 MET A 428 -1 O SER A 424 N GLU A 382 SHEET 4 AA6 4 TYR A 436 LEU A 441 -1 O THR A 437 N VAL A 427 SHEET 1 AA7 4 GLN B 347 LEU B 351 0 SHEET 2 AA7 4 GLN B 362 PHE B 372 -1 O VAL B 366 N LEU B 351 SHEET 3 AA7 4 PHE B 404 ASP B 413 -1 O SER B 408 N CYS B 367 SHEET 4 AA7 4 TYR B 391 THR B 393 -1 N LYS B 392 O VAL B 409 SHEET 1 AA8 4 GLN B 347 LEU B 351 0 SHEET 2 AA8 4 GLN B 362 PHE B 372 -1 O VAL B 366 N LEU B 351 SHEET 3 AA8 4 PHE B 404 ASP B 413 -1 O SER B 408 N CYS B 367 SHEET 4 AA8 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AA9 3 GLN B 386 GLU B 388 0 SHEET 2 AA9 3 GLU B 380 SER B 383 -1 N TRP B 381 O GLU B 388 SHEET 3 AA9 3 PHE B 423 SER B 426 -1 O SER B 426 N GLU B 380 SHEET 1 AB1 2 CYS C 2 HIS C 5 0 SHEET 2 AB1 2 GLU C 8 CYS C 12 -1 O TRP C 11 N ALA C 3 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.02 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.04 SSBOND 3 CYS B 367 CYS B 425 1555 1555 2.02 SSBOND 4 CYS C 2 CYS C 12 1555 1555 2.06 LINK ND2 ASN A 297 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.43 LINK O4 NAG D 5 C1 GAL D 6 1555 1555 1.45 CISPEP 1 GLY A 236 GLY A 237 0 3.18 CISPEP 2 TYR A 373 PRO A 374 0 -1.74 CISPEP 3 TYR B 373 PRO B 374 0 7.44 CRYST1 36.611 59.629 149.707 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027314 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006680 0.00000