data_5DLI # _entry.id 5DLI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DLI pdb_00005dli 10.2210/pdb5dli/pdb WWPDB D_1000213382 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-14 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2019-01-09 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 1 4 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_struct_oper_list 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' pdbx_audit_support 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 3 'Structure model' '_citation.country' 4 3 'Structure model' '_citation.journal_abbrev' 5 3 'Structure model' '_citation.journal_id_ASTM' 6 3 'Structure model' '_citation.journal_id_CSD' 7 3 'Structure model' '_citation.journal_id_ISSN' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' 11 3 'Structure model' '_citation.pdbx_database_id_DOI' 12 3 'Structure model' '_citation.pdbx_database_id_PubMed' 13 3 'Structure model' '_citation.title' 14 3 'Structure model' '_citation.year' 15 4 'Structure model' '_pdbx_audit_support.funding_organization' 16 5 'Structure model' '_database_2.pdbx_DOI' 17 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DLI _pdbx_database_status.recvd_initial_deposition_date 2015-09-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sangwan, S.' 1 'Zhao, A.' 2 'Sawaya, M.R.' 3 'Eisenberg, D.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 114 _citation.language ? _citation.page_first 8770 _citation.page_last 8775 _citation.title 'Atomic structure of a toxic, oligomeric segment of SOD1 linked to amyotrophic lateral sclerosis (ALS).' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1705091114 _citation.pdbx_database_id_PubMed 28760994 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sangwan, S.' 1 ? primary 'Zhao, A.' 2 ? primary 'Adams, K.L.' 3 ? primary 'Jayson, C.K.' 4 ? primary 'Sawaya, M.R.' 5 ? primary 'Guenther, E.L.' 6 ? primary 'Pan, A.C.' 7 ? primary 'Ngo, J.' 8 ? primary 'Moore, D.M.' 9 ? primary 'Soriaga, A.B.' 10 ? primary 'Do, T.D.' 11 ? primary 'Goldschmidt, L.' 12 ? primary 'Nelson, R.' 13 ? primary 'Bowers, M.T.' 14 ? primary 'Koehler, C.M.' 15 ? primary 'Shaw, D.E.' 16 ? primary 'Novitch, B.G.' 17 ? primary 'Eisenberg, D.S.' 18 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Superoxide dismutase [Cu-Zn]' 1217.523 8 1.15.1.1 P29K 'Residues 29-39' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'IODIDE ION' 126.904 2 ? ? ? ? 4 water nat water 18.015 50 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Superoxide dismutase 1,hSod1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KVKVWGSIKGL _entity_poly.pdbx_seq_one_letter_code_can KVKVWGSIKGL _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'IODIDE ION' IOD 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 LYS n 1 4 VAL n 1 5 TRP n 1 6 GLY n 1 7 SER n 1 8 ILE n 1 9 LYS n 1 10 GLY n 1 11 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details synthesized # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 28 28 LYS LYS A . n A 1 2 VAL 2 29 29 VAL VAL A . n A 1 3 LYS 3 30 30 LYS LYS A . n A 1 4 VAL 4 31 31 VAL VAL A . n A 1 5 TRP 5 32 32 TRP TRP A . n A 1 6 GLY 6 33 33 GLY GLY A . n A 1 7 SER 7 34 34 SER SER A . n A 1 8 ILE 8 35 35 ILE ILE A . n A 1 9 LYS 9 36 36 LYS LYS A . n A 1 10 GLY 10 37 37 GLY GLY A . n A 1 11 LEU 11 38 38 LEU LEU A . n B 1 1 LYS 1 28 28 LYS LYS B . n B 1 2 VAL 2 29 29 VAL VAL B . n B 1 3 LYS 3 30 30 LYS LYS B . n B 1 4 VAL 4 31 31 VAL VAL B . n B 1 5 TRP 5 32 32 TRP TRP B . n B 1 6 GLY 6 33 33 GLY GLY B . n B 1 7 SER 7 34 34 SER SER B . n B 1 8 ILE 8 35 35 ILE ILE B . n B 1 9 LYS 9 36 36 LYS LYS B . n B 1 10 GLY 10 37 37 GLY GLY B . n B 1 11 LEU 11 38 38 LEU LEU B . n C 1 1 LYS 1 28 28 LYS LYS C . n C 1 2 VAL 2 29 29 VAL VAL C . n C 1 3 LYS 3 30 30 LYS LYS C . n C 1 4 VAL 4 31 31 VAL VAL C . n C 1 5 TRP 5 32 32 TRP TRP C . n C 1 6 GLY 6 33 33 GLY GLY C . n C 1 7 SER 7 34 34 SER SER C . n C 1 8 ILE 8 35 35 ILE ILE C . n C 1 9 LYS 9 36 36 LYS LYS C . n C 1 10 GLY 10 37 37 GLY GLY C . n C 1 11 LEU 11 38 38 LEU LEU C . n D 1 1 LYS 1 28 28 LYS LYS D . n D 1 2 VAL 2 29 29 VAL VAL D . n D 1 3 LYS 3 30 30 LYS LYS D . n D 1 4 VAL 4 31 31 VAL VAL D . n D 1 5 TRP 5 32 32 TRP TRP D . n D 1 6 GLY 6 33 33 GLY GLY D . n D 1 7 SER 7 34 34 SER SER D . n D 1 8 ILE 8 35 35 ILE ILE D . n D 1 9 LYS 9 36 36 LYS LYS D . n D 1 10 GLY 10 37 37 GLY GLY D . n D 1 11 LEU 11 38 38 LEU LEU D . n E 1 1 LYS 1 28 28 LYS LYS E . n E 1 2 VAL 2 29 29 VAL VAL E . n E 1 3 LYS 3 30 30 LYS LYS E . n E 1 4 VAL 4 31 31 VAL VAL E . n E 1 5 TRP 5 32 32 TRP TRP E . n E 1 6 GLY 6 33 33 GLY GLY E . n E 1 7 SER 7 34 34 SER SER E . n E 1 8 ILE 8 35 35 ILE ILE E . n E 1 9 LYS 9 36 36 LYS LYS E . n E 1 10 GLY 10 37 37 GLY GLY E . n E 1 11 LEU 11 38 38 LEU LEU E . n F 1 1 LYS 1 28 28 LYS LYS F . n F 1 2 VAL 2 29 29 VAL VAL F . n F 1 3 LYS 3 30 30 LYS LYS F . n F 1 4 VAL 4 31 31 VAL VAL F . n F 1 5 TRP 5 32 32 TRP TRP F . n F 1 6 GLY 6 33 33 GLY GLY F . n F 1 7 SER 7 34 34 SER SER F . n F 1 8 ILE 8 35 35 ILE ILE F . n F 1 9 LYS 9 36 36 LYS LYS F . n F 1 10 GLY 10 37 37 GLY GLY F . n F 1 11 LEU 11 38 38 LEU LEU F . n G 1 1 LYS 1 28 28 LYS LYS G . n G 1 2 VAL 2 29 29 VAL VAL G . n G 1 3 LYS 3 30 30 LYS LYS G . n G 1 4 VAL 4 31 31 VAL VAL G . n G 1 5 TRP 5 32 32 TRP TRP G . n G 1 6 GLY 6 33 33 GLY GLY G . n G 1 7 SER 7 34 34 SER SER G . n G 1 8 ILE 8 35 35 ILE ILE G . n G 1 9 LYS 9 36 36 LYS LYS G . n G 1 10 GLY 10 37 37 GLY GLY G . n G 1 11 LEU 11 38 38 LEU LEU G . n H 1 1 LYS 1 28 28 LYS LYS H . n H 1 2 VAL 2 29 29 VAL VAL H . n H 1 3 LYS 3 30 30 LYS LYS H . n H 1 4 VAL 4 31 31 VAL VAL H . n H 1 5 TRP 5 32 32 TRP TRP H . n H 1 6 GLY 6 33 33 GLY GLY H . n H 1 7 SER 7 34 34 SER SER H . n H 1 8 ILE 8 35 35 ILE ILE H . n H 1 9 LYS 9 36 36 LYS LYS H . n H 1 10 GLY 10 37 37 GLY GLY H . n H 1 11 LEU 11 38 38 LEU LEU H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL 1 101 3 GOL GOL B . J 3 IOD 1 101 1 IOD IOD D . K 3 IOD 1 102 2 IOD IOD D . L 4 HOH 1 101 57 HOH HOH A . L 4 HOH 2 102 2 HOH HOH A . L 4 HOH 3 103 28 HOH HOH A . L 4 HOH 4 104 56 HOH HOH A . L 4 HOH 5 105 24 HOH HOH A . M 4 HOH 1 201 12 HOH HOH B . M 4 HOH 2 202 25 HOH HOH B . M 4 HOH 3 203 32 HOH HOH B . M 4 HOH 4 204 40 HOH HOH B . N 4 HOH 1 101 34 HOH HOH C . N 4 HOH 2 102 13 HOH HOH C . N 4 HOH 3 103 46 HOH HOH C . N 4 HOH 4 104 11 HOH HOH C . N 4 HOH 5 105 29 HOH HOH C . N 4 HOH 6 106 8 HOH HOH C . N 4 HOH 7 107 55 HOH HOH C . O 4 HOH 1 201 17 HOH HOH D . O 4 HOH 2 202 7 HOH HOH D . O 4 HOH 3 203 14 HOH HOH D . O 4 HOH 4 204 31 HOH HOH D . O 4 HOH 5 205 22 HOH HOH D . O 4 HOH 6 206 37 HOH HOH D . P 4 HOH 1 101 10 HOH HOH E . P 4 HOH 2 102 39 HOH HOH E . P 4 HOH 3 103 20 HOH HOH E . P 4 HOH 4 104 30 HOH HOH E . P 4 HOH 5 105 36 HOH HOH E . P 4 HOH 6 106 35 HOH HOH E . Q 4 HOH 1 101 15 HOH HOH F . Q 4 HOH 2 102 27 HOH HOH F . Q 4 HOH 3 103 48 HOH HOH F . Q 4 HOH 4 104 19 HOH HOH F . Q 4 HOH 5 105 26 HOH HOH F . Q 4 HOH 6 106 42 HOH HOH F . Q 4 HOH 7 107 51 HOH HOH F . Q 4 HOH 8 108 50 HOH HOH F . Q 4 HOH 9 109 53 HOH HOH F . R 4 HOH 1 101 4 HOH HOH G . R 4 HOH 2 102 33 HOH HOH G . R 4 HOH 3 103 21 HOH HOH G . R 4 HOH 4 104 54 HOH HOH G . S 4 HOH 1 101 45 HOH HOH H . S 4 HOH 2 102 47 HOH HOH H . S 4 HOH 3 103 9 HOH HOH H . S 4 HOH 4 104 38 HOH HOH H . S 4 HOH 5 105 16 HOH HOH H . S 4 HOH 6 106 44 HOH HOH H . S 4 HOH 7 107 43 HOH HOH H . S 4 HOH 8 108 18 HOH HOH H . S 4 HOH 9 109 41 HOH HOH H . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 'BUSTER 2.10.0' 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5DLI _cell.details ? _cell.formula_units_Z ? _cell.length_a 33.090 _cell.length_a_esd ? _cell.length_b 44.390 _cell.length_b_esd ? _cell.length_c 71.430 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DLI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'reservoir contained 13% PEG 6000, 0.2M Sodium Citrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-12-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 21.810 _reflns.entry_id 5DLI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 19.33 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6261 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 95.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs 0.997 _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.084 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.111 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 43500 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.100 _reflns_shell.d_res_low 2.150 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.88 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible 875 _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 856 _reflns_shell.percent_possible_all 96.800 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs 0.931 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.443 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.05 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.488 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects 0 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -4.3559 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -2.3511 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 6.7071 _refine.B_iso_max 82.870 _refine.B_iso_mean 23.8300 _refine.B_iso_min 6.350 _refine.correlation_coeff_Fo_to_Fc 0.9217 _refine.correlation_coeff_Fo_to_Fc_free 0.9212 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DLI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 19.3300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6249 _refine.ls_number_reflns_R_free 313 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.8400 _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2150 _refine.ls_R_factor_R_free 0.2622 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2125 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1940 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1980 _refine.pdbx_overall_SU_R_Blow_DPI 0.2340 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.2190 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5DLI _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.243 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 19.3300 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 748 _refine_hist.pdbx_number_residues_total 88 _refine_hist.pdbx_B_iso_mean_ligand 46.30 _refine_hist.pdbx_B_iso_mean_solvent 34.29 _refine_hist.pdbx_number_atoms_protein 688 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 254 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 8 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 91 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 715 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 81 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 778 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 715 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.890 ? 947 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 2.430 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 15.320 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.1000 _refine_ls_shell.d_res_low 2.3500 _refine_ls_shell.number_reflns_all 1747 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.number_reflns_R_work 1660 _refine_ls_shell.percent_reflns_obs 95.8400 _refine_ls_shell.percent_reflns_R_free 4.9800 _refine_ls_shell.R_factor_all 0.1744 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1716 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5DLI _struct.title 'Corkscrew assembly of SOD1 residues 28-38' _struct.pdbx_model_details 'amyloid-related oligomer' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DLI _struct_keywords.text 'amyloid-related oligomer, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SODC_HUMAN _struct_ref.pdbx_db_accession P00441 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PVKVWGSIKGL _struct_ref.pdbx_align_begin 29 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5DLI A 1 ? 11 ? P00441 29 ? 39 ? 28 38 2 1 5DLI B 1 ? 11 ? P00441 29 ? 39 ? 28 38 3 1 5DLI C 1 ? 11 ? P00441 29 ? 39 ? 28 38 4 1 5DLI D 1 ? 11 ? P00441 29 ? 39 ? 28 38 5 1 5DLI E 1 ? 11 ? P00441 29 ? 39 ? 28 38 6 1 5DLI F 1 ? 11 ? P00441 29 ? 39 ? 28 38 7 1 5DLI G 1 ? 11 ? P00441 29 ? 39 ? 28 38 8 1 5DLI H 1 ? 11 ? P00441 29 ? 39 ? 28 38 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5DLI LYS A 1 ? UNP P00441 PRO 29 'engineered mutation' 28 1 2 5DLI LYS B 1 ? UNP P00441 PRO 29 'engineered mutation' 28 2 3 5DLI LYS C 1 ? UNP P00441 PRO 29 'engineered mutation' 28 3 4 5DLI LYS D 1 ? UNP P00441 PRO 29 'engineered mutation' 28 4 5 5DLI LYS E 1 ? UNP P00441 PRO 29 'engineered mutation' 28 5 6 5DLI LYS F 1 ? UNP P00441 PRO 29 'engineered mutation' 28 6 7 5DLI LYS G 1 ? UNP P00441 PRO 29 'engineered mutation' 28 7 8 5DLI LYS H 1 ? UNP P00441 PRO 29 'engineered mutation' 28 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 2 ? GLY A 6 ? VAL A 29 GLY A 33 AA1 2 VAL B 2 ? SER B 7 ? VAL B 29 SER B 34 AA1 3 VAL C 2 ? SER C 7 ? VAL C 29 SER C 34 AA1 4 VAL D 2 ? SER D 7 ? VAL D 29 SER D 34 AA1 5 VAL E 2 ? SER E 7 ? VAL E 29 SER E 34 AA1 6 VAL F 2 ? SER F 7 ? VAL F 29 SER F 34 AA1 7 VAL G 2 ? SER G 7 ? VAL G 29 SER G 34 AA1 8 VAL H 2 ? GLY H 6 ? VAL H 29 GLY H 33 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 3 ? N LYS A 30 O TRP B 5 ? O TRP B 32 AA1 2 3 N VAL B 4 ? N VAL B 31 O GLY C 6 ? O GLY C 33 AA1 3 4 N TRP C 5 ? N TRP C 32 O LYS D 3 ? O LYS D 30 AA1 4 5 N GLY D 6 ? N GLY D 33 O VAL E 4 ? O VAL E 31 AA1 5 6 N LYS E 3 ? N LYS E 30 O TRP F 5 ? O TRP F 32 AA1 6 7 N GLY F 6 ? N GLY F 33 O VAL G 4 ? O VAL G 31 AA1 7 8 N TRP G 5 ? N TRP G 32 O LYS H 3 ? O LYS H 30 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B GOL 101 ? 6 'binding site for residue GOL B 101' AC2 Software D IOD 101 ? 3 'binding site for residue IOD D 101' AC3 Software D IOD 102 ? 4 'binding site for residue IOD D 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 1 ? LYS A 28 . ? 3_645 ? 2 AC1 6 LYS A 3 ? LYS A 30 . ? 3_645 ? 3 AC1 6 LYS B 1 ? LYS B 28 . ? 1_555 ? 4 AC1 6 GLY H 6 ? GLY H 33 . ? 4_556 ? 5 AC1 6 SER H 7 ? SER H 34 . ? 4_556 ? 6 AC1 6 HOH S . ? HOH H 102 . ? 4_556 ? 7 AC2 3 LYS D 3 ? LYS D 30 . ? 4_556 ? 8 AC2 3 TRP G 5 ? TRP G 32 . ? 1_655 ? 9 AC2 3 LYS H 3 ? LYS H 30 . ? 1_655 ? 10 AC3 4 TRP D 5 ? TRP D 32 . ? 1_555 ? 11 AC3 4 LYS E 3 ? LYS E 30 . ? 1_555 ? 12 AC3 4 LYS F 1 ? LYS F 28 . ? 4_556 ? 13 AC3 4 SER G 7 ? SER G 34 . ? 4_556 ? # _phasing.method SIRAS # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLY N N N N 1 GLY CA C N N 2 GLY C C N N 3 GLY O O N N 4 GLY OXT O N N 5 GLY H H N N 6 GLY H2 H N N 7 GLY HA2 H N N 8 GLY HA3 H N N 9 GLY HXT H N N 10 GOL C1 C N N 11 GOL O1 O N N 12 GOL C2 C N N 13 GOL O2 O N N 14 GOL C3 C N N 15 GOL O3 O N N 16 GOL H11 H N N 17 GOL H12 H N N 18 GOL HO1 H N N 19 GOL H2 H N N 20 GOL HO2 H N N 21 GOL H31 H N N 22 GOL H32 H N N 23 GOL HO3 H N N 24 HOH O O N N 25 HOH H1 H N N 26 HOH H2 H N N 27 ILE N N N N 28 ILE CA C N S 29 ILE C C N N 30 ILE O O N N 31 ILE CB C N S 32 ILE CG1 C N N 33 ILE CG2 C N N 34 ILE CD1 C N N 35 ILE OXT O N N 36 ILE H H N N 37 ILE H2 H N N 38 ILE HA H N N 39 ILE HB H N N 40 ILE HG12 H N N 41 ILE HG13 H N N 42 ILE HG21 H N N 43 ILE HG22 H N N 44 ILE HG23 H N N 45 ILE HD11 H N N 46 ILE HD12 H N N 47 ILE HD13 H N N 48 ILE HXT H N N 49 IOD I I N N 50 LEU N N N N 51 LEU CA C N S 52 LEU C C N N 53 LEU O O N N 54 LEU CB C N N 55 LEU CG C N N 56 LEU CD1 C N N 57 LEU CD2 C N N 58 LEU OXT O N N 59 LEU H H N N 60 LEU H2 H N N 61 LEU HA H N N 62 LEU HB2 H N N 63 LEU HB3 H N N 64 LEU HG H N N 65 LEU HD11 H N N 66 LEU HD12 H N N 67 LEU HD13 H N N 68 LEU HD21 H N N 69 LEU HD22 H N N 70 LEU HD23 H N N 71 LEU HXT H N N 72 LYS N N N N 73 LYS CA C N S 74 LYS C C N N 75 LYS O O N N 76 LYS CB C N N 77 LYS CG C N N 78 LYS CD C N N 79 LYS CE C N N 80 LYS NZ N N N 81 LYS OXT O N N 82 LYS H H N N 83 LYS H2 H N N 84 LYS HA H N N 85 LYS HB2 H N N 86 LYS HB3 H N N 87 LYS HG2 H N N 88 LYS HG3 H N N 89 LYS HD2 H N N 90 LYS HD3 H N N 91 LYS HE2 H N N 92 LYS HE3 H N N 93 LYS HZ1 H N N 94 LYS HZ2 H N N 95 LYS HZ3 H N N 96 LYS HXT H N N 97 PRO N N N N 98 PRO CA C N S 99 PRO C C N N 100 PRO O O N N 101 PRO CB C N N 102 PRO CG C N N 103 PRO CD C N N 104 PRO OXT O N N 105 PRO H H N N 106 PRO HA H N N 107 PRO HB2 H N N 108 PRO HB3 H N N 109 PRO HG2 H N N 110 PRO HG3 H N N 111 PRO HD2 H N N 112 PRO HD3 H N N 113 PRO HXT H N N 114 SER N N N N 115 SER CA C N S 116 SER C C N N 117 SER O O N N 118 SER CB C N N 119 SER OG O N N 120 SER OXT O N N 121 SER H H N N 122 SER H2 H N N 123 SER HA H N N 124 SER HB2 H N N 125 SER HB3 H N N 126 SER HG H N N 127 SER HXT H N N 128 TRP N N N N 129 TRP CA C N S 130 TRP C C N N 131 TRP O O N N 132 TRP CB C N N 133 TRP CG C Y N 134 TRP CD1 C Y N 135 TRP CD2 C Y N 136 TRP NE1 N Y N 137 TRP CE2 C Y N 138 TRP CE3 C Y N 139 TRP CZ2 C Y N 140 TRP CZ3 C Y N 141 TRP CH2 C Y N 142 TRP OXT O N N 143 TRP H H N N 144 TRP H2 H N N 145 TRP HA H N N 146 TRP HB2 H N N 147 TRP HB3 H N N 148 TRP HD1 H N N 149 TRP HE1 H N N 150 TRP HE3 H N N 151 TRP HZ2 H N N 152 TRP HZ3 H N N 153 TRP HH2 H N N 154 TRP HXT H N N 155 VAL N N N N 156 VAL CA C N S 157 VAL C C N N 158 VAL O O N N 159 VAL CB C N N 160 VAL CG1 C N N 161 VAL CG2 C N N 162 VAL OXT O N N 163 VAL H H N N 164 VAL H2 H N N 165 VAL HA H N N 166 VAL HB H N N 167 VAL HG11 H N N 168 VAL HG12 H N N 169 VAL HG13 H N N 170 VAL HG21 H N N 171 VAL HG22 H N N 172 VAL HG23 H N N 173 VAL HXT H N N 174 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY N CA sing N N 1 GLY N H sing N N 2 GLY N H2 sing N N 3 GLY CA C sing N N 4 GLY CA HA2 sing N N 5 GLY CA HA3 sing N N 6 GLY C O doub N N 7 GLY C OXT sing N N 8 GLY OXT HXT sing N N 9 GOL C1 O1 sing N N 10 GOL C1 C2 sing N N 11 GOL C1 H11 sing N N 12 GOL C1 H12 sing N N 13 GOL O1 HO1 sing N N 14 GOL C2 O2 sing N N 15 GOL C2 C3 sing N N 16 GOL C2 H2 sing N N 17 GOL O2 HO2 sing N N 18 GOL C3 O3 sing N N 19 GOL C3 H31 sing N N 20 GOL C3 H32 sing N N 21 GOL O3 HO3 sing N N 22 HOH O H1 sing N N 23 HOH O H2 sing N N 24 ILE N CA sing N N 25 ILE N H sing N N 26 ILE N H2 sing N N 27 ILE CA C sing N N 28 ILE CA CB sing N N 29 ILE CA HA sing N N 30 ILE C O doub N N 31 ILE C OXT sing N N 32 ILE CB CG1 sing N N 33 ILE CB CG2 sing N N 34 ILE CB HB sing N N 35 ILE CG1 CD1 sing N N 36 ILE CG1 HG12 sing N N 37 ILE CG1 HG13 sing N N 38 ILE CG2 HG21 sing N N 39 ILE CG2 HG22 sing N N 40 ILE CG2 HG23 sing N N 41 ILE CD1 HD11 sing N N 42 ILE CD1 HD12 sing N N 43 ILE CD1 HD13 sing N N 44 ILE OXT HXT sing N N 45 LEU N CA sing N N 46 LEU N H sing N N 47 LEU N H2 sing N N 48 LEU CA C sing N N 49 LEU CA CB sing N N 50 LEU CA HA sing N N 51 LEU C O doub N N 52 LEU C OXT sing N N 53 LEU CB CG sing N N 54 LEU CB HB2 sing N N 55 LEU CB HB3 sing N N 56 LEU CG CD1 sing N N 57 LEU CG CD2 sing N N 58 LEU CG HG sing N N 59 LEU CD1 HD11 sing N N 60 LEU CD1 HD12 sing N N 61 LEU CD1 HD13 sing N N 62 LEU CD2 HD21 sing N N 63 LEU CD2 HD22 sing N N 64 LEU CD2 HD23 sing N N 65 LEU OXT HXT sing N N 66 LYS N CA sing N N 67 LYS N H sing N N 68 LYS N H2 sing N N 69 LYS CA C sing N N 70 LYS CA CB sing N N 71 LYS CA HA sing N N 72 LYS C O doub N N 73 LYS C OXT sing N N 74 LYS CB CG sing N N 75 LYS CB HB2 sing N N 76 LYS CB HB3 sing N N 77 LYS CG CD sing N N 78 LYS CG HG2 sing N N 79 LYS CG HG3 sing N N 80 LYS CD CE sing N N 81 LYS CD HD2 sing N N 82 LYS CD HD3 sing N N 83 LYS CE NZ sing N N 84 LYS CE HE2 sing N N 85 LYS CE HE3 sing N N 86 LYS NZ HZ1 sing N N 87 LYS NZ HZ2 sing N N 88 LYS NZ HZ3 sing N N 89 LYS OXT HXT sing N N 90 PRO N CA sing N N 91 PRO N CD sing N N 92 PRO N H sing N N 93 PRO CA C sing N N 94 PRO CA CB sing N N 95 PRO CA HA sing N N 96 PRO C O doub N N 97 PRO C OXT sing N N 98 PRO CB CG sing N N 99 PRO CB HB2 sing N N 100 PRO CB HB3 sing N N 101 PRO CG CD sing N N 102 PRO CG HG2 sing N N 103 PRO CG HG3 sing N N 104 PRO CD HD2 sing N N 105 PRO CD HD3 sing N N 106 PRO OXT HXT sing N N 107 SER N CA sing N N 108 SER N H sing N N 109 SER N H2 sing N N 110 SER CA C sing N N 111 SER CA CB sing N N 112 SER CA HA sing N N 113 SER C O doub N N 114 SER C OXT sing N N 115 SER CB OG sing N N 116 SER CB HB2 sing N N 117 SER CB HB3 sing N N 118 SER OG HG sing N N 119 SER OXT HXT sing N N 120 TRP N CA sing N N 121 TRP N H sing N N 122 TRP N H2 sing N N 123 TRP CA C sing N N 124 TRP CA CB sing N N 125 TRP CA HA sing N N 126 TRP C O doub N N 127 TRP C OXT sing N N 128 TRP CB CG sing N N 129 TRP CB HB2 sing N N 130 TRP CB HB3 sing N N 131 TRP CG CD1 doub Y N 132 TRP CG CD2 sing Y N 133 TRP CD1 NE1 sing Y N 134 TRP CD1 HD1 sing N N 135 TRP CD2 CE2 doub Y N 136 TRP CD2 CE3 sing Y N 137 TRP NE1 CE2 sing Y N 138 TRP NE1 HE1 sing N N 139 TRP CE2 CZ2 sing Y N 140 TRP CE3 CZ3 doub Y N 141 TRP CE3 HE3 sing N N 142 TRP CZ2 CH2 doub Y N 143 TRP CZ2 HZ2 sing N N 144 TRP CZ3 CH2 sing Y N 145 TRP CZ3 HZ3 sing N N 146 TRP CH2 HH2 sing N N 147 TRP OXT HXT sing N N 148 VAL N CA sing N N 149 VAL N H sing N N 150 VAL N H2 sing N N 151 VAL CA C sing N N 152 VAL CA CB sing N N 153 VAL CA HA sing N N 154 VAL C O doub N N 155 VAL C OXT sing N N 156 VAL CB CG1 sing N N 157 VAL CB CG2 sing N N 158 VAL CB HB sing N N 159 VAL CG1 HG11 sing N N 160 VAL CG1 HG12 sing N N 161 VAL CG1 HG13 sing N N 162 VAL CG2 HG21 sing N N 163 VAL CG2 HG22 sing N N 164 VAL CG2 HG23 sing N N 165 VAL OXT HXT sing N N 166 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AG04812 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5DLI _atom_sites.fract_transf_matrix[1][1] 0.030221 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022528 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O # loop_