HEADER TRANSFERASE, HYDROLASE/TRANSLATION 09-SEP-15 5DMQ TITLE CRYSTAL STRUCTURE OF MOUSE ERF1 IN COMPLEX WITH REVERSE TRANSCRIPTASE TITLE 2 (RT) OF MOLONEY MURINE LEUKEMIA VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H P80; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RT; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ERF1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS (ISOLATE SOURCE 3 SHINNICK); SOURCE 4 ORGANISM_COMMON: MOMLV; SOURCE 5 ORGANISM_TAXID: 928306; SOURCE 6 STRAIN: ISOLATE SHINNICK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: ETF1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS COMPLEX, ERF1, RT, TRANSFERASE, HYDROLASE-TRANSLATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.TANG,H.SONG REVDAT 3 20-MAR-24 5DMQ 1 REMARK REVDAT 2 04-OCT-17 5DMQ 1 REMARK REVDAT 1 06-JUL-16 5DMQ 0 JRNL AUTH X.TANG,Y.ZHU,S.L.BAKER,M.W.BOWLER,B.J.CHEN,C.CHEN,J.R.HOGG, JRNL AUTH 2 S.P.GOFF,H.SONG JRNL TITL STRUCTURAL BASIS OF SUPPRESSION OF HOST TRANSLATION JRNL TITL 2 TERMINATION BY MOLONEY MURINE LEUKEMIA VIRUS JRNL REF NAT COMMUN V. 7 12070 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27329342 JRNL DOI 10.1038/NCOMMS12070 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 637 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 227.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.965 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 82.814 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8047 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7900 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10904 ; 1.316 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18193 ; 0.961 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 996 ; 7.115 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 343 ;39.736 ;24.169 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1415 ;16.374 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;14.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1229 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8985 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1780 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12901 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 96.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M MAGNESIUM CHLORIDE, 0.1 M HEPES REMARK 280 PH 7.5, 20 % POLYACRYLIC ACID SODIUM SALT 5100, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 193.29933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.64967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.64967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 193.29933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 103 REMARK 465 PRO A 104 REMARK 465 GLY A 105 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 ASP A 449 REMARK 465 ARG A 450 REMARK 465 TRP A 451 REMARK 465 LEU A 452 REMARK 465 SER A 453 REMARK 465 ASN A 454 REMARK 465 GLY A 490 REMARK 465 LEU A 491 REMARK 465 GLN A 492 REMARK 465 HIS A 493 REMARK 465 ASN A 494 REMARK 465 CYS A 495 REMARK 465 LEU A 496 REMARK 465 ASP A 497 REMARK 465 ILE A 498 REMARK 465 ARG A 600 REMARK 465 ARG A 601 REMARK 465 GLY A 602 REMARK 465 LEU A 603 REMARK 465 LEU A 604 REMARK 465 THR A 605 REMARK 465 SER A 606 REMARK 465 GLU A 607 REMARK 465 GLY A 608 REMARK 465 LYS A 609 REMARK 465 GLU A 610 REMARK 465 THR A 664 REMARK 465 PRO A 665 REMARK 465 ASP A 666 REMARK 465 THR A 667 REMARK 465 SER A 668 REMARK 465 THR A 669 REMARK 465 LEU A 670 REMARK 465 LEU A 671 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 GLN B 350 REMARK 465 GLU B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 LYS B 354 REMARK 465 SER B 355 REMARK 465 HIS B 356 REMARK 465 PHE B 357 REMARK 465 THR B 358 REMARK 465 ASP B 359 REMARK 465 LYS B 360 REMARK 465 GLU B 361 REMARK 465 THR B 362 REMARK 465 GLY B 363 REMARK 465 GLN B 364 REMARK 465 GLU B 365 REMARK 465 HIS B 366 REMARK 465 GLU B 367 REMARK 465 LEU B 368 REMARK 465 ILE B 369 REMARK 465 GLU B 370 REMARK 465 GLY B 421 REMARK 465 MET B 422 REMARK 465 GLU B 423 REMARK 465 TYR B 424 REMARK 465 GLN B 425 REMARK 465 GLY B 426 REMARK 465 GLY B 427 REMARK 465 ASP B 428 REMARK 465 ASP B 429 REMARK 465 GLU B 430 REMARK 465 PHE B 431 REMARK 465 PHE B 432 REMARK 465 ASP B 433 REMARK 465 LEU B 434 REMARK 465 ASP B 435 REMARK 465 ASP B 436 REMARK 465 TYR B 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 ARG A 506 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 507 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 109.75 -169.26 REMARK 500 ASN A 107 75.13 -107.93 REMARK 500 ASP A 114 102.35 64.47 REMARK 500 PRO A 127 90.22 -68.46 REMARK 500 THR A 147 107.84 -163.02 REMARK 500 PHE A 168 36.74 -91.49 REMARK 500 MET A 177 -2.60 -146.63 REMARK 500 ASP A 216 -45.67 74.32 REMARK 500 VAL A 223 -110.46 60.74 REMARK 500 LYS A 274 121.49 -170.61 REMARK 500 LYS A 295 -18.13 64.27 REMARK 500 ASN A 335 97.13 -52.81 REMARK 500 ASP A 466 86.39 -65.99 REMARK 500 ALA A 481 -78.93 -69.07 REMARK 500 PRO A 487 99.38 -60.59 REMARK 500 GLU A 488 127.45 -170.67 REMARK 500 ALA A 500 -44.76 71.35 REMARK 500 THR A 505 -62.96 -165.46 REMARK 500 PRO A 507 -144.92 -63.28 REMARK 500 ASP A 511 58.04 -112.56 REMARK 500 PRO A 513 96.00 -55.33 REMARK 500 ASP A 518 -140.60 -94.78 REMARK 500 GLN A 530 -75.18 -120.40 REMARK 500 ALA A 536 91.21 65.47 REMARK 500 ILE A 547 -78.41 63.34 REMARK 500 THR A 556 -135.64 56.10 REMARK 500 SER A 557 -136.76 -139.51 REMARK 500 ALA A 573 143.43 -179.38 REMARK 500 GLU A 574 -55.33 -162.87 REMARK 500 LYS A 577 -72.62 64.09 REMARK 500 LEU A 578 136.52 65.49 REMARK 500 TYR A 598 -87.93 -118.46 REMARK 500 ASN A 613 49.93 -168.03 REMARK 500 ASP A 615 -76.66 -51.27 REMARK 500 ARG A 629 93.96 54.59 REMARK 500 CYS A 635 55.80 -114.37 REMARK 500 PRO A 636 40.95 -76.57 REMARK 500 LYS A 640 41.80 -149.00 REMARK 500 HIS A 642 91.70 77.34 REMARK 500 SER A 643 -161.99 -127.85 REMARK 500 GLU A 645 -62.56 -179.50 REMARK 500 ALA A 660 -39.38 -141.38 REMARK 500 ALA B 8 -49.62 169.24 REMARK 500 THR B 32 90.86 -57.30 REMARK 500 SER B 33 12.33 -140.11 REMARK 500 SER B 36 77.35 -116.46 REMARK 500 LYS B 63 65.89 67.73 REMARK 500 SER B 64 52.51 -163.89 REMARK 500 ARG B 65 -78.49 22.10 REMARK 500 LYS B 87 -146.35 25.89 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DMR RELATED DB: PDB DBREF 5DMQ A 24 671 UNP P03355 POL_MLVMS 683 1330 DBREF 5DMQ B 1 437 UNP Q8BWY3 ERF1_MOUSE 1 437 SEQRES 1 A 648 THR TRP LEU SER ASP PHE PRO GLN ALA TRP ALA GLU THR SEQRES 2 A 648 GLY GLY MET GLY LEU ALA VAL ARG GLN ALA PRO LEU ILE SEQRES 3 A 648 ILE PRO LEU LYS ALA THR SER THR PRO VAL SER ILE LYS SEQRES 4 A 648 GLN TYR PRO MET SER GLN GLU ALA ARG LEU GLY ILE LYS SEQRES 5 A 648 PRO HIS ILE GLN ARG LEU LEU ASP GLN GLY ILE LEU VAL SEQRES 6 A 648 PRO CYS GLN SER PRO TRP ASN THR PRO LEU LEU PRO VAL SEQRES 7 A 648 LYS LYS PRO GLY THR ASN ASP TYR ARG PRO VAL GLN ASP SEQRES 8 A 648 LEU ARG GLU VAL ASN LYS ARG VAL GLU ASP ILE HIS PRO SEQRES 9 A 648 THR VAL PRO ASN PRO TYR ASN LEU LEU SER GLY LEU PRO SEQRES 10 A 648 PRO SER HIS GLN TRP TYR THR VAL LEU ASP LEU LYS ASP SEQRES 11 A 648 ALA PHE PHE CYS LEU ARG LEU HIS PRO THR SER GLN PRO SEQRES 12 A 648 LEU PHE ALA PHE GLU TRP ARG ASP PRO GLU MET GLY ILE SEQRES 13 A 648 SER GLY GLN LEU THR TRP THR ARG LEU PRO GLN GLY PHE SEQRES 14 A 648 LYS ASN SER PRO THR LEU PHE ASP GLU ALA LEU HIS ARG SEQRES 15 A 648 ASP LEU ALA ASP PHE ARG ILE GLN HIS PRO ASP LEU ILE SEQRES 16 A 648 LEU LEU GLN TYR VAL ASP ASP LEU LEU LEU ALA ALA THR SEQRES 17 A 648 SER GLU LEU ASP CYS GLN GLN GLY THR ARG ALA LEU LEU SEQRES 18 A 648 GLN THR LEU GLY ASN LEU GLY TYR ARG ALA SER ALA LYS SEQRES 19 A 648 LYS ALA GLN ILE CYS GLN LYS GLN VAL LYS TYR LEU GLY SEQRES 20 A 648 TYR LEU LEU LYS GLU GLY GLN ARG TRP LEU THR GLU ALA SEQRES 21 A 648 ARG LYS GLU THR VAL MET GLY GLN PRO THR PRO LYS THR SEQRES 22 A 648 PRO ARG GLN LEU ARG GLU PHE LEU GLY THR ALA GLY PHE SEQRES 23 A 648 CYS ARG LEU TRP ILE PRO GLY PHE ALA GLU MET ALA ALA SEQRES 24 A 648 PRO LEU TYR PRO LEU THR LYS THR GLY THR LEU PHE ASN SEQRES 25 A 648 TRP GLY PRO ASP GLN GLN LYS ALA TYR GLN GLU ILE LYS SEQRES 26 A 648 GLN ALA LEU LEU THR ALA PRO ALA LEU GLY LEU PRO ASP SEQRES 27 A 648 LEU THR LYS PRO PHE GLU LEU PHE VAL ASP GLU LYS GLN SEQRES 28 A 648 GLY TYR ALA LYS GLY VAL LEU THR GLN LYS LEU GLY PRO SEQRES 29 A 648 TRP ARG ARG PRO VAL ALA TYR LEU SER LYS LYS LEU ASP SEQRES 30 A 648 PRO VAL ALA ALA GLY TRP PRO PRO CYS LEU ARG MET VAL SEQRES 31 A 648 ALA ALA ILE ALA VAL LEU THR LYS ASP ALA GLY LYS LEU SEQRES 32 A 648 THR MET GLY GLN PRO LEU VAL ILE LEU ALA PRO HIS ALA SEQRES 33 A 648 VAL GLU ALA LEU VAL LYS GLN PRO PRO ASP ARG TRP LEU SEQRES 34 A 648 SER ASN ALA ARG MET THR HIS TYR GLN ALA LEU LEU LEU SEQRES 35 A 648 ASP THR ASP ARG VAL GLN PHE GLY PRO VAL VAL ALA LEU SEQRES 36 A 648 ASN PRO ALA THR LEU LEU PRO LEU PRO GLU GLU GLY LEU SEQRES 37 A 648 GLN HIS ASN CYS LEU ASP ILE LEU ALA GLU ALA HIS GLY SEQRES 38 A 648 THR ARG PRO ASP LEU THR ASP GLN PRO LEU PRO ASP ALA SEQRES 39 A 648 ASP HIS THR TRP TYR THR ASP GLY SER SER LEU LEU GLN SEQRES 40 A 648 GLU GLY GLN ARG LYS ALA GLY ALA ALA VAL THR THR GLU SEQRES 41 A 648 THR GLU VAL ILE TRP ALA LYS ALA LEU PRO ALA GLY THR SEQRES 42 A 648 SER ALA GLN ARG ALA GLU LEU ILE ALA LEU THR GLN ALA SEQRES 43 A 648 LEU LYS MET ALA GLU GLY LYS LYS LEU ASN VAL TYR THR SEQRES 44 A 648 ASP SER ARG TYR ALA PHE ALA THR ALA HIS ILE HIS GLY SEQRES 45 A 648 GLU ILE TYR ARG ARG ARG GLY LEU LEU THR SER GLU GLY SEQRES 46 A 648 LYS GLU ILE LYS ASN LYS ASP GLU ILE LEU ALA LEU LEU SEQRES 47 A 648 LYS ALA LEU PHE LEU PRO LYS ARG LEU SER ILE ILE HIS SEQRES 48 A 648 CYS PRO GLY HIS GLN LYS GLY HIS SER ALA GLU ALA ARG SEQRES 49 A 648 GLY ASN ARG MET ALA ASP GLN ALA ALA ARG LYS ALA ALA SEQRES 50 A 648 ILE THR GLU THR PRO ASP THR SER THR LEU LEU SEQRES 1 B 437 MET ALA ASP ASP PRO SER ALA ALA ASP ARG ASN VAL GLU SEQRES 2 B 437 ILE TRP LYS ILE LYS LYS LEU ILE LYS SER LEU GLU ALA SEQRES 3 B 437 ALA ARG GLY ASN GLY THR SER MET ILE SER LEU ILE ILE SEQRES 4 B 437 PRO PRO LYS ASP GLN ILE SER ARG VAL ALA LYS MET LEU SEQRES 5 B 437 ALA ASP GLU PHE GLY THR ALA SER ASN ILE LYS SER ARG SEQRES 6 B 437 VAL ASN ARG LEU SER VAL LEU GLY ALA ILE THR SER VAL SEQRES 7 B 437 GLN GLN ARG LEU LYS LEU TYR ASN LYS VAL PRO PRO ASN SEQRES 8 B 437 GLY LEU VAL VAL TYR CYS GLY THR ILE VAL THR GLU GLU SEQRES 9 B 437 GLY LYS GLU LYS LYS VAL ASN ILE ASP PHE GLU PRO PHE SEQRES 10 B 437 LYS PRO ILE ASN THR SER LEU TYR LEU CYS ASP ASN LYS SEQRES 11 B 437 PHE HIS THR GLU ALA LEU THR ALA LEU LEU SER ASP ASP SEQRES 12 B 437 SER LYS PHE GLY PHE ILE VAL ILE ASP GLY SER GLY ALA SEQRES 13 B 437 LEU PHE GLY THR LEU GLN GLY ASN THR ARG GLU VAL LEU SEQRES 14 B 437 HIS LYS PHE THR VAL ASP LEU PRO LYS LYS HIS GLY ARG SEQRES 15 B 437 GLY GLY GLN SER ALA LEU ARG PHE ALA ARG LEU ARG MET SEQRES 16 B 437 GLU LYS ARG HIS ASN TYR VAL ARG LYS VAL ALA GLU THR SEQRES 17 B 437 ALA VAL GLN LEU PHE ILE SER GLY ASP LYS VAL ASN VAL SEQRES 18 B 437 ALA GLY LEU VAL LEU ALA GLY SER ALA ASP PHE LYS THR SEQRES 19 B 437 GLU LEU SER GLN SER ASP MET PHE ASP GLN ARG LEU GLN SEQRES 20 B 437 SER LYS VAL LEU LYS LEU VAL ASP ILE SER TYR GLY GLY SEQRES 21 B 437 GLU ASN GLY PHE ASN GLN ALA ILE GLU LEU SER THR GLU SEQRES 22 B 437 VAL LEU SER ASN VAL LYS PHE ILE GLN GLU LYS LYS LEU SEQRES 23 B 437 ILE GLY ARG TYR PHE ASP GLU ILE SER GLN ASP THR GLY SEQRES 24 B 437 LYS TYR CYS PHE GLY VAL GLU ASP THR LEU LYS ALA LEU SEQRES 25 B 437 GLU MET GLY ALA VAL GLU ILE LEU ILE VAL TYR GLU ASN SEQRES 26 B 437 LEU ASP ILE MET ARG TYR VAL LEU HIS CYS GLN GLY THR SEQRES 27 B 437 GLU GLU GLU LYS ILE LEU TYR LEU THR PRO GLU GLN GLU SEQRES 28 B 437 LYS ASP LYS SER HIS PHE THR ASP LYS GLU THR GLY GLN SEQRES 29 B 437 GLU HIS GLU LEU ILE GLU SER MET PRO LEU LEU GLU TRP SEQRES 30 B 437 PHE ALA ASN ASN TYR LYS LYS PHE GLY ALA THR LEU GLU SEQRES 31 B 437 ILE VAL THR ASP LYS SER GLN GLU GLY SER GLN PHE VAL SEQRES 32 B 437 LYS GLY PHE GLY GLY ILE GLY GLY ILE LEU ARG TYR ARG SEQRES 33 B 437 VAL ASP PHE GLN GLY MET GLU TYR GLN GLY GLY ASP ASP SEQRES 34 B 437 GLU PHE PHE ASP LEU ASP ASP TYR HELIX 1 AA1 THR A 24 PHE A 29 1 6 HELIX 2 AA2 SER A 67 GLN A 84 1 18 HELIX 3 AA3 LEU A 115 VAL A 122 1 8 HELIX 4 AA4 ASN A 131 SER A 137 1 7 HELIX 5 AA5 ALA A 154 LEU A 158 5 5 HELIX 6 AA6 SER A 164 ALA A 169 5 6 HELIX 7 AA7 ASN A 194 HIS A 214 1 21 HELIX 8 AA8 SER A 232 GLY A 251 1 20 HELIX 9 AA9 THR A 281 GLY A 290 1 10 HELIX 10 AB1 THR A 296 GLY A 308 1 13 HELIX 11 AB2 PHE A 309 ARG A 311 5 3 HELIX 12 AB3 GLY A 316 ALA A 321 1 6 HELIX 13 AB4 ALA A 322 THR A 328 5 7 HELIX 14 AB5 GLY A 337 THR A 353 1 17 HELIX 15 AB6 ASP A 400 GLY A 405 1 6 HELIX 16 AB7 PRO A 407 MET A 428 1 22 HELIX 17 AB8 ARG A 456 ASP A 466 1 11 HELIX 18 AB9 GLN A 559 MET A 572 1 14 HELIX 19 AC1 SER A 584 HIS A 592 1 9 HELIX 20 AC2 ASN A 613 LEU A 624 1 12 HELIX 21 AC3 GLU A 645 ALA A 659 1 15 HELIX 22 AC4 ASP B 9 ALA B 27 1 19 HELIX 23 AC5 GLN B 44 ALA B 59 1 16 HELIX 24 AC6 SER B 64 LEU B 84 1 21 HELIX 25 AC7 THR B 133 ALA B 138 1 6 HELIX 26 AC8 PHE B 190 PHE B 213 1 24 HELIX 27 AC9 ASP B 231 SER B 239 1 9 HELIX 28 AD1 GLY B 260 SER B 271 1 12 HELIX 29 AD2 SER B 271 ASN B 277 1 7 HELIX 30 AD3 ASN B 277 GLN B 296 1 20 HELIX 31 AD4 GLY B 304 MET B 314 1 11 HELIX 32 AD5 PRO B 373 TYR B 382 1 10 HELIX 33 AD6 SER B 396 GLY B 407 1 12 SHEET 1 AA1 3 LEU A 87 PRO A 89 0 SHEET 2 AA1 3 GLY A 181 TRP A 185 -1 O THR A 184 N VAL A 88 SHEET 3 AA1 3 PHE A 170 TRP A 172 -1 N TRP A 172 O GLY A 181 SHEET 1 AA2 2 LEU A 99 VAL A 101 0 SHEET 2 AA2 2 ARG A 110 VAL A 112 -1 O VAL A 112 N LEU A 99 SHEET 1 AA3 4 ILE A 218 TYR A 222 0 SHEET 2 AA3 4 ASP A 225 ALA A 229 -1 O LEU A 227 N LEU A 220 SHEET 3 AA3 4 TYR A 146 ASP A 150 -1 N THR A 147 O LEU A 228 SHEET 4 AA3 4 GLN A 260 GLN A 263 -1 O GLN A 260 N VAL A 148 SHEET 1 AA4 4 GLN A 265 TYR A 268 0 SHEET 2 AA4 4 TYR A 271 LYS A 274 -1 O TYR A 271 N TYR A 268 SHEET 3 AA4 4 GLN A 277 LEU A 280 -1 O TRP A 279 N LEU A 272 SHEET 4 AA4 4 LEU A 357 GLY A 358 -1 O LEU A 357 N ARG A 278 SHEET 1 AA5 3 PHE A 366 LYS A 373 0 SHEET 2 AA5 3 TYR A 376 LEU A 385 -1 O THR A 382 N GLU A 367 SHEET 3 AA5 3 TRP A 388 ALA A 393 -1 O VAL A 392 N LEU A 381 SHEET 1 AA6 3 PHE A 366 LYS A 373 0 SHEET 2 AA6 3 TYR A 376 LEU A 385 -1 O THR A 382 N GLU A 367 SHEET 3 AA6 3 SER A 396 LYS A 398 -1 O LYS A 397 N ALA A 377 SHEET 1 AA7 2 LEU A 432 VAL A 433 0 SHEET 2 AA7 2 VAL A 470 GLN A 471 1 O GLN A 471 N LEU A 432 SHEET 1 AA8 5 TRP A 548 ALA A 551 0 SHEET 2 AA8 5 GLY A 537 THR A 541 -1 N VAL A 540 O TRP A 548 SHEET 3 AA8 5 THR A 520 SER A 526 -1 N ASP A 524 O ALA A 539 SHEET 4 AA8 5 ASN A 579 THR A 582 1 O TYR A 581 N THR A 523 SHEET 5 AA8 5 SER A 631 ILE A 633 1 O ILE A 633 N VAL A 580 SHEET 1 AA9 3 ILE B 38 ILE B 39 0 SHEET 2 AA9 3 LEU B 93 THR B 102 -1 O LEU B 93 N ILE B 39 SHEET 3 AA9 3 ILE B 112 PHE B 114 -1 O ILE B 112 N TYR B 96 SHEET 1 AB1 4 GLY B 105 LYS B 109 0 SHEET 2 AB1 4 LEU B 93 THR B 102 -1 N ILE B 100 O LYS B 108 SHEET 3 AB1 4 MET B 34 ILE B 35 -1 N ILE B 35 O CYS B 97 SHEET 4 AB1 4 CYS B 127 ASP B 128 -1 O ASP B 128 N MET B 34 SHEET 1 AB2 5 ARG B 166 THR B 173 0 SHEET 2 AB2 5 GLY B 155 LEU B 161 -1 N ALA B 156 O PHE B 172 SHEET 3 AB2 5 PHE B 146 ILE B 151 -1 N PHE B 146 O LEU B 161 SHEET 4 AB2 5 GLY B 223 GLY B 228 1 O GLY B 223 N GLY B 147 SHEET 5 AB2 5 VAL B 250 ASP B 255 1 O LEU B 251 N LEU B 224 SHEET 1 AB3 4 TYR B 301 PHE B 303 0 SHEET 2 AB3 4 ILE B 409 ILE B 412 -1 O GLY B 411 N CYS B 302 SHEET 3 AB3 4 ILE B 319 TYR B 323 -1 N ILE B 319 O ILE B 412 SHEET 4 AB3 4 THR B 388 VAL B 392 1 O THR B 388 N LEU B 320 SHEET 1 AB4 2 VAL B 332 LEU B 333 0 SHEET 2 AB4 2 GLU B 341 LYS B 342 -1 O GLU B 341 N LEU B 333 CISPEP 1 ILE A 593 HIS A 594 0 -25.69 CISPEP 2 HIS A 594 GLY A 595 0 -11.19 CISPEP 3 GLY A 637 HIS A 638 0 3.75 CISPEP 4 LYS A 640 GLY A 641 0 -0.79 CISPEP 5 GLY B 386 ALA B 387 0 19.50 CRYST1 92.653 92.653 289.949 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010793 0.006231 0.000000 0.00000 SCALE2 0.000000 0.012463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003449 0.00000