HEADER GTP-BINDING PROTEIN 09-SEP-15 5DN8 TITLE 1.76 ANGSTROM CRYSTAL STRUCTURE OF GTP-BINDING PROTEIN DER FROM TITLE 2 COXIELLA BURNETII IN COMPLEX WITH GDP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE DER; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GTP-BINDING PROTEIN ENGA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXIELLA BURNETII (STRAIN RSA 493 / NINE MILE SOURCE 3 PHASE I); SOURCE 4 ORGANISM_TAXID: 227377; SOURCE 5 STRAIN: RSA 493 / NINE MILE PHASE I; SOURCE 6 GENE: DER, ENGA, CBU_1245; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS GTP-BINDING PROTEIN, GDP, COMPLEX, STRUCTURAL GENOMICS, CSGID, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,A.HAN,H.-Y.KIM,S.GRIMSHAW,K.KWON,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 27-SEP-23 5DN8 1 REMARK REVDAT 1 14-OCT-15 5DN8 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,A.HAN,H.-Y.KIM,S.GRIMSHAW,K.KWON, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.76 ANGSTROM CRYSTAL STRUCTURE OF GTP-BINDING PROTEIN DER JRNL TITL 2 FROM COXIELLA BURNETII IN COMPLEX WITH GDP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 44856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2386 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3705 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3679 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5059 ; 1.473 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8428 ; 0.746 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 3.217 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;27.989 ;22.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;10.239 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;12.319 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4301 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 889 ; 0.016 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1827 ; 2.114 ; 2.516 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1826 ; 2.108 ; 2.514 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2331 ; 3.218 ; 3.741 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2332 ; 3.217 ; 3.743 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 2.812 ; 2.959 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1870 ; 2.816 ; 2.961 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2716 ; 4.476 ; 4.287 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4205 ; 7.467 ;21.197 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4087 ; 7.342 ;20.586 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 23 REMARK 3 RESIDUE RANGE : A 41 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6717 -6.1517 -7.7096 REMARK 3 T TENSOR REMARK 3 T11: 0.0326 T22: 0.0524 REMARK 3 T33: 0.0466 T12: -0.0084 REMARK 3 T13: -0.0116 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.1924 L22: 2.3858 REMARK 3 L33: 2.0530 L12: 0.1494 REMARK 3 L13: 0.0797 L23: 0.4492 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0013 S13: -0.1494 REMARK 3 S21: 0.1443 S22: 0.0440 S23: -0.1653 REMARK 3 S31: 0.1850 S32: -0.0322 S33: -0.0346 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7291 -14.4940 -28.9591 REMARK 3 T TENSOR REMARK 3 T11: 0.4037 T22: 0.2720 REMARK 3 T33: 0.2700 T12: -0.0133 REMARK 3 T13: 0.0098 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.0329 L22: 0.4094 REMARK 3 L33: 8.5966 L12: -0.0831 REMARK 3 L13: 0.3916 L23: -1.8664 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: -0.0335 S13: 0.0153 REMARK 3 S21: 0.0143 S22: 0.1889 S23: 0.0377 REMARK 3 S31: 0.0442 S32: -0.7555 S33: -0.2726 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5510 -35.0782 -25.8203 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0360 REMARK 3 T33: 0.0299 T12: 0.0238 REMARK 3 T13: 0.0157 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.1305 L22: 2.0389 REMARK 3 L33: 1.2639 L12: 1.0390 REMARK 3 L13: 0.1437 L23: 0.1030 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: -0.0913 S13: 0.0447 REMARK 3 S21: 0.1490 S22: -0.0444 S23: -0.1185 REMARK 3 S31: 0.0280 S32: 0.0842 S33: -0.0168 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 351 A 434 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2827 -11.9210 -46.0517 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.1357 REMARK 3 T33: 0.0611 T12: -0.0325 REMARK 3 T13: 0.0198 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.5213 L22: 2.9430 REMARK 3 L33: 2.5486 L12: -0.7374 REMARK 3 L13: 0.6878 L23: -1.2144 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: -0.0731 S13: -0.0065 REMARK 3 S21: -0.0654 S22: 0.0552 S23: 0.2819 REMARK 3 S31: 0.0522 S32: -0.2849 S33: -0.1064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47308 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HJC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 11.0 MG/ML, 0.25M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS-HCL PH 8.3, 10MM GDP, SCREEN: JSCG+ (H11), REMARK 280 0.2M MAGNESIUM CHLORIDE, 0.1M BIS-TRIS PH 5.5, 25% (W/V) PEG REMARK 280 3350., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.13750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.98400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.22150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.98400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.13750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.22150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ASP A 62 REMARK 465 THR A 63 REMARK 465 GLU A 64 REMARK 465 ASN A 65 REMARK 465 LYS A 66 REMARK 465 GLU A 67 REMARK 465 VAL A 68 REMARK 465 ALA A 69 REMARK 465 PRO A 70 REMARK 465 LEU A 71 REMARK 465 ALA A 72 REMARK 465 GLU A 165 REMARK 465 GLU A 166 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 VAL A 169 REMARK 465 ILE A 170 REMARK 465 GLU A 171 REMARK 465 LYS A 172 REMARK 465 ASP A 205 REMARK 465 GLN A 206 REMARK 465 PRO A 207 REMARK 465 GLY A 208 REMARK 465 THR A 209 REMARK 465 THR A 210 REMARK 465 ARG A 211 REMARK 465 ASP A 241 REMARK 465 TYR A 242 REMARK 465 VAL A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 435 REMARK 465 PRO A 436 REMARK 465 TYR A 437 REMARK 465 GLU A 438 REMARK 465 GLY A 439 REMARK 465 GLN A 440 REMARK 465 GLU A 441 REMARK 465 GLU A 442 REMARK 465 ARG A 443 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 212 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 1.04 82.98 REMARK 500 ASP A 48 -116.38 52.89 REMARK 500 SER A 49 -9.34 74.59 REMARK 500 ASP A 122 -118.66 48.19 REMARK 500 ASP A 122 -120.21 48.19 REMARK 500 ASN A 221 -131.22 62.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP02160 RELATED DB: TARGETTRACK DBREF 5DN8 A 1 443 UNP Q83C83 DER_COXBU 1 443 SEQADV 5DN8 SER A -2 UNP Q83C83 EXPRESSION TAG SEQADV 5DN8 ASN A -1 UNP Q83C83 EXPRESSION TAG SEQADV 5DN8 ALA A 0 UNP Q83C83 EXPRESSION TAG SEQRES 1 A 446 SER ASN ALA MET LEU PRO VAL ILE ALA ILE VAL GLY ARG SEQRES 2 A 446 PRO ASN VAL GLY LYS SER THR LEU PHE ASN TYR LEU THR SEQRES 3 A 446 LYS SER ARG ALA ALA LEU VAL ALA ASP VAL PRO GLY VAL SEQRES 4 A 446 THR ARG ASP ARG GLN TYR GLY GLU THR THR ILE ASP SER SEQRES 5 A 446 GLN ARG LEU LEU LEU VAL ASP THR GLY GLY LEU VAL ASP SEQRES 6 A 446 THR GLU ASN LYS GLU VAL ALA PRO LEU ALA GLU THR GLN SEQRES 7 A 446 VAL GLU GLN ALA ILE ASP GLU SER ASP CYS ILE LEU PHE SEQRES 8 A 446 LEU VAL ASP ALA LYS ALA GLY LEU VAL PRO ALA ASP GLU SEQRES 9 A 446 ILE ILE ALA GLU ARG LEU ARG LYS LYS GLY LYS LYS ILE SEQRES 10 A 446 PHE LEU ALA VAL ASN LYS ALA ASP ARG ALA ARG ALA ALA SEQRES 11 A 446 VAL VAL GLN SER ASP PHE TYR LYS LEU GLY PHE GLY GLU SEQRES 12 A 446 PRO TYR VAL ILE ALA ALA ALA SER GLY ARG GLY VAL LYS SEQRES 13 A 446 ASP LEU MET THR GLN VAL LEU GLU ASN LEU PRO GLU GLU SEQRES 14 A 446 LYS GLU VAL ILE GLU LYS GLU VAL GLY ILE LYS ILE ALA SEQRES 15 A 446 MET ILE GLY ARG PRO ASN VAL GLY LYS SER THR LEU ILE SEQRES 16 A 446 ASN ARG LEU LEU GLY GLU GLU ARG VAL ILE VAL TYR ASP SEQRES 17 A 446 GLN PRO GLY THR THR ARG ASP SER ILE TYR ILE PRO PHE SEQRES 18 A 446 ALA ARG ASN ASP GLU ASN TYR THR LEU ILE ASP THR ALA SEQRES 19 A 446 GLY ILE ARG ARG ARG ALA LYS ILE GLN ASP TYR VAL GLU SEQRES 20 A 446 LYS PHE SER MET ILE LYS SER LEU GLN ALA MET HIS ALA SEQRES 21 A 446 ALA ASP VAL VAL ILE PHE LEU LEU ASP ALA ARG GLN GLY SEQRES 22 A 446 VAL THR GLU GLN ASP LEU ARG LEU LEU ASN ARG ILE VAL SEQRES 23 A 446 GLU ALA GLY VAL SER LEU ILE ILE ALA VAL ASN LYS TRP SEQRES 24 A 446 ASP GLY LEU ASN ILE GLU GLU ARG ASP ASN VAL ARG ASN SEQRES 25 A 446 ALA ILE ASP ARG ARG MET PRO PHE VAL ASP PHE ALA ARG SEQRES 26 A 446 ARG TYR PHE ILE SER ALA LEU HIS GLY THR GLY VAL GLY SEQRES 27 A 446 LYS LEU PHE ARG ALA ILE GLN GLU SER TYR GLN SER ILE SEQRES 28 A 446 GLN GLN GLU LEU THR THR GLY GLN LEU THR ARG ALA LEU SEQRES 29 A 446 GLU LYS ALA VAL ALA GLU HIS GLU PRO PRO LEU VAL LYS SEQRES 30 A 446 GLY ARG ARG ILE ARG LEU ARG TYR ALA HIS LEU GLY ALA SEQRES 31 A 446 ARG HIS PRO LEU THR ILE VAL VAL HIS GLY LYS GLN THR SEQRES 32 A 446 LYS SER LEU PRO GLN SER TYR SER ARG TYR LEU ALA ASN SEQRES 33 A 446 TYR PHE ARG LYS THR PHE ASN PHE ILE GLY VAL PRO VAL SEQRES 34 A 446 HIS ILE LYS LEU LYS THR ASP PRO ASN PRO TYR GLU GLY SEQRES 35 A 446 GLN GLU GLU ARG HET GDP A 501 28 HET GDP A 502 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 HOH *301(H2 O) HELIX 1 AA1 GLY A 14 THR A 23 1 10 HELIX 2 AA2 GLY A 58 LEU A 60 5 3 HELIX 3 AA3 THR A 74 SER A 83 1 10 HELIX 4 AA4 VAL A 97 LYS A 110 1 14 HELIX 5 AA5 ARG A 125 SER A 131 1 7 HELIX 6 AA6 ASP A 132 GLY A 137 5 6 HELIX 7 AA7 GLY A 151 ASN A 162 1 12 HELIX 8 AA8 GLY A 187 LEU A 196 1 10 HELIX 9 AA9 GLY A 232 GLN A 240 1 9 HELIX 10 AB1 SER A 247 ALA A 258 1 12 HELIX 11 AB2 THR A 272 GLY A 286 1 15 HELIX 12 AB3 ASN A 300 MET A 315 1 16 HELIX 13 AB4 PRO A 316 ASP A 319 5 4 HELIX 14 AB5 GLY A 333 GLY A 335 5 3 HELIX 15 AB6 LYS A 336 GLN A 350 1 15 HELIX 16 AB7 THR A 353 HIS A 368 1 16 HELIX 17 AB8 GLN A 399 LEU A 403 5 5 HELIX 18 AB9 PRO A 404 ASN A 420 1 17 SHEET 1 AA1 6 TYR A 42 ILE A 47 0 SHEET 2 AA1 6 GLN A 50 ASP A 56 -1 O LEU A 54 N GLY A 43 SHEET 3 AA1 6 VAL A 4 VAL A 8 1 N ILE A 7 O VAL A 55 SHEET 4 AA1 6 CYS A 85 ASP A 91 1 O LEU A 87 N VAL A 8 SHEET 5 AA1 6 LYS A 113 ASN A 119 1 O PHE A 115 N ILE A 86 SHEET 6 AA1 6 TYR A 142 VAL A 143 1 O TYR A 142 N VAL A 118 SHEET 1 AA2 4 VAL A 30 ALA A 31 0 SHEET 2 AA2 4 HIS A 427 LYS A 431 -1 O ILE A 428 N VAL A 30 SHEET 3 AA2 4 THR A 392 LYS A 398 1 N ILE A 393 O HIS A 427 SHEET 4 AA2 4 ARG A 379 ALA A 387 -1 N TYR A 382 O HIS A 396 SHEET 1 AA3 7 VAL A 201 VAL A 203 0 SHEET 2 AA3 7 TYR A 215 ARG A 220 -1 O ALA A 219 N ILE A 202 SHEET 3 AA3 7 GLU A 223 ILE A 228 -1 O LEU A 227 N ILE A 216 SHEET 4 AA3 7 ILE A 176 ILE A 181 1 N ILE A 178 O ILE A 228 SHEET 5 AA3 7 VAL A 260 ASP A 266 1 O ILE A 262 N ALA A 179 SHEET 6 AA3 7 SER A 288 ASN A 294 1 O ALA A 292 N PHE A 263 SHEET 7 AA3 7 ARG A 322 PHE A 325 1 O TYR A 324 N VAL A 293 SHEET 1 AA4 2 LEU A 372 VAL A 373 0 SHEET 2 AA4 2 ARG A 376 ARG A 377 -1 O ARG A 376 N VAL A 373 CISPEP 1 HIS A 389 PRO A 390 0 -3.39 CISPEP 2 ASP A 433 PRO A 434 0 1.79 CISPEP 3 ASP A 433 PRO A 434 0 -0.19 SITE 1 AC1 16 ASN A 185 VAL A 186 GLY A 187 LYS A 188 SITE 2 AC1 16 SER A 189 THR A 190 ARG A 236 ARG A 268 SITE 3 AC1 16 ASN A 294 LYS A 295 ASP A 297 SER A 327 SITE 4 AC1 16 ALA A 328 LEU A 329 LYS A 401 HOH A 646 SITE 1 AC2 22 ASN A 12 VAL A 13 GLY A 14 LYS A 15 SITE 2 AC2 22 SER A 16 THR A 17 LYS A 93 ASN A 119 SITE 3 AC2 22 LYS A 120 ASP A 122 ALA A 145 ALA A 146 SITE 4 AC2 22 ALA A 147 HOH A 626 HOH A 643 HOH A 652 SITE 5 AC2 22 HOH A 699 HOH A 743 HOH A 781 HOH A 804 SITE 6 AC2 22 HOH A 814 HOH A 824 CRYST1 44.275 98.443 107.968 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009262 0.00000