data_5DNB # _entry.id 5DNB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.374 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DNB pdb_00005dnb 10.2210/pdb5dnb/pdb RCSB BDJ019 ? ? WWPDB D_1000179696 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5DNB _pdbx_database_status.recvd_initial_deposition_date 1990-03-22 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prive, G.G.' 1 'Yanagi, K.' 2 'Dickerson, R.E.' 3 # _citation.id primary _citation.title ;Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 217 _citation.page_first 177 _citation.page_last 199 _citation.year 1991 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1988677 _citation.pdbx_database_id_DOI '10.1016/0022-2836(91)90619-H' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prive, G.G.' 1 ? primary 'Yanagi, K.' 2 ? primary 'Dickerson, R.E.' 3 ? # _cell.entry_id 5DNB _cell.length_a 32.250 _cell.length_b 25.530 _cell.length_c 34.380 _cell.angle_alpha 90.00 _cell.angle_beta 113.40 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 5DNB _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') ; 3045.004 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DA)(DA)(DC)(DG)(DT)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAACGTTGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 5DNB _struct_ref.pdbx_db_accession 5DNB _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DNB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5DNB _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 5DNB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.91 _exptl_crystal.density_Matthews 2.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 2 WATER ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 273.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 5DNB _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8.000 _reflns.d_resolution_high 1.400 _reflns.number_obs 4402 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 5DNB _refine.ls_number_reflns_obs 4402 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.400 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1600000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 283 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 2.100 4.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 4.000 8.000 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.021 0.030 ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.029 0.030 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.025 0.025 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.050 0.060 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.020 0.020 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.098 0.100 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.074 0.200 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.121 0.200 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 5DNB _struct.title ;STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5DNB _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 11 A HOH 74 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 11 A HOH 75 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 11 A HOH 76 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 11 A HOH 77 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 11 A HOH 78 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 11 A HOH 79 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 12 A HOH 80 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 12 A HOH 80 2_555 ? ? ? ? ? ? ? 2.146 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 12 A HOH 81 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 12 A HOH 81 2_555 ? ? ? ? ? ? ? 2.162 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 12 A HOH 82 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 12 A HOH 82 2_555 ? ? ? ? ? ? ? 2.188 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 13 A HOH 15 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 13 A HOH 83 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 13 A HOH 84 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 13 A HOH 85 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 13 A HOH 86 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 13 A HOH 87 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 14 A HOH 16 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 14 A HOH 17 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 14 A HOH 89 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 14 A HOH 90 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 14 A HOH 91 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 14 A HOH 92 1_555 ? ? ? ? ? ? ? 2.140 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 3 A DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 3 A DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 4 A DT 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 4 A DT 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 7 A DA 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 7 A DA 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 8 A DA 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 8 A DA 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 11 ? 6 'BINDING SITE FOR RESIDUE MG A 11' AC2 Software A MG 12 ? 6 'BINDING SITE FOR RESIDUE MG A 12' AC3 Software A MG 13 ? 6 'BINDING SITE FOR RESIDUE MG A 13' AC4 Software A MG 14 ? 2 'BINDING SITE FOR RESIDUE MG A 14' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH F . ? HOH A 74 . ? 1_555 ? 2 AC1 6 HOH F . ? HOH A 75 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 76 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 77 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 78 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 79 . ? 1_555 ? 7 AC2 6 HOH F . ? HOH A 80 . ? 2_555 ? 8 AC2 6 HOH F . ? HOH A 80 . ? 1_555 ? 9 AC2 6 HOH F . ? HOH A 81 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH A 81 . ? 2_555 ? 11 AC2 6 HOH F . ? HOH A 82 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH A 82 . ? 2_555 ? 13 AC3 6 HOH F . ? HOH A 15 . ? 1_555 ? 14 AC3 6 HOH F . ? HOH A 83 . ? 1_555 ? 15 AC3 6 HOH F . ? HOH A 84 . ? 1_555 ? 16 AC3 6 HOH F . ? HOH A 85 . ? 1_555 ? 17 AC3 6 HOH F . ? HOH A 86 . ? 1_555 ? 18 AC3 6 HOH F . ? HOH A 87 . ? 1_555 ? 19 AC4 2 HOH F . ? HOH A 16 . ? 1_555 ? 20 AC4 2 HOH F . ? HOH A 17 . ? 1_555 ? # _database_PDB_matrix.entry_id 5DNB _database_PDB_matrix.origx[1][1] 0.917755 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.397148 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx[3][1] -0.397148 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 0.917755 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 5DNB _atom_sites.fract_transf_matrix[1][1] 0.031008 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.013418 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039170 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031693 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_sites_footnote.id _atom_sites_footnote.text 1 'THESE WATER MOLECULES MAKE A SPLINE OF HYDRATION.' 2 'THESE WATER MOLECULES MAKE A SPLINE OF HYDRATION.' 3 'THESE WATER MOLECULES MAKE A SPLINE OF HYDRATION.' 4 'HOH 63 IS ONLY 1.57 ANGSTROMS FROM THE O4* OF A 8.' # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 11 11 MG MO6 A . C 2 MG 1 12 12 MG MO6 A . D 2 MG 1 13 13 MG MO6 A . E 2 MG 1 14 14 MG MO6 A . F 3 HOH 1 15 15 HOH HOH A . F 3 HOH 2 92 14 HOH MO6 A . F 3 HOH 3 16 16 HOH HOH A . F 3 HOH 4 89 14 HOH MO6 A . F 3 HOH 5 17 17 HOH HOH A . F 3 HOH 6 90 14 HOH MO6 A . F 3 HOH 7 18 18 HOH HOH A . F 3 HOH 8 91 14 HOH MO6 A . F 3 HOH 9 19 19 HOH HOH A . F 3 HOH 10 20 20 HOH HOH A . F 3 HOH 11 21 21 HOH HOH A . F 3 HOH 12 22 22 HOH HOH A . F 3 HOH 13 23 23 HOH HOH A . F 3 HOH 14 24 24 HOH HOH A . F 3 HOH 15 25 25 HOH HOH A . F 3 HOH 16 26 26 HOH HOH A . F 3 HOH 17 27 27 HOH HOH A . F 3 HOH 18 28 28 HOH HOH A . F 3 HOH 19 29 29 HOH HOH A . F 3 HOH 20 30 30 HOH HOH A . F 3 HOH 21 31 31 HOH HOH A . F 3 HOH 22 32 32 HOH HOH A . F 3 HOH 23 33 33 HOH HOH A . F 3 HOH 24 34 34 HOH HOH A . F 3 HOH 25 35 35 HOH HOH A . F 3 HOH 26 36 36 HOH HOH A . F 3 HOH 27 37 37 HOH HOH A . F 3 HOH 28 38 38 HOH HOH A . F 3 HOH 29 39 39 HOH HOH A . F 3 HOH 30 40 40 HOH HOH A . F 3 HOH 31 41 41 HOH HOH A . F 3 HOH 32 42 42 HOH HOH A . F 3 HOH 33 43 43 HOH HOH A . F 3 HOH 34 44 44 HOH HOH A . F 3 HOH 35 45 45 HOH HOH A . F 3 HOH 36 46 46 HOH HOH A . F 3 HOH 37 47 47 HOH HOH A . F 3 HOH 38 48 48 HOH HOH A . F 3 HOH 39 49 49 HOH HOH A . F 3 HOH 40 50 50 HOH HOH A . F 3 HOH 41 51 51 HOH HOH A . F 3 HOH 42 52 52 HOH HOH A . F 3 HOH 43 53 53 HOH HOH A . F 3 HOH 44 54 54 HOH HOH A . F 3 HOH 45 55 55 HOH HOH A . F 3 HOH 46 56 56 HOH HOH A . F 3 HOH 47 57 57 HOH HOH A . F 3 HOH 48 58 58 HOH HOH A . F 3 HOH 49 59 59 HOH HOH A . F 3 HOH 50 60 60 HOH HOH A . F 3 HOH 51 61 61 HOH HOH A . F 3 HOH 52 62 62 HOH HOH A . F 3 HOH 53 63 63 HOH HOH A . F 3 HOH 54 64 64 HOH HOH A . F 3 HOH 55 65 65 HOH HOH A . F 3 HOH 56 66 66 HOH HOH A . F 3 HOH 57 67 67 HOH HOH A . F 3 HOH 58 68 68 HOH HOH A . F 3 HOH 59 69 69 HOH HOH A . F 3 HOH 60 70 70 HOH HOH A . F 3 HOH 61 71 71 HOH HOH A . F 3 HOH 62 72 72 HOH HOH A . F 3 HOH 63 73 73 HOH HOH A . F 3 HOH 64 74 11 HOH MO6 A . F 3 HOH 65 75 11 HOH MO6 A . F 3 HOH 66 76 11 HOH MO6 A . F 3 HOH 67 77 11 HOH MO6 A . F 3 HOH 68 78 11 HOH MO6 A . F 3 HOH 69 79 11 HOH MO6 A . F 3 HOH 70 80 12 HOH MO6 A . F 3 HOH 71 81 12 HOH MO6 A . F 3 HOH 72 82 12 HOH MO6 A . F 3 HOH 73 83 13 HOH MO6 A . F 3 HOH 74 84 13 HOH MO6 A . F 3 HOH 75 85 13 HOH MO6 A . F 3 HOH 76 86 13 HOH MO6 A . F 3 HOH 77 87 13 HOH MO6 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 29.5971823482 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 21.5718453530 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MG _pdbx_struct_special_symmetry.auth_seq_id 12 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id MG _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 74 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 75 ? 1_555 173.6 ? 2 O ? F HOH . ? A HOH 74 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 76 ? 1_555 96.5 ? 3 O ? F HOH . ? A HOH 75 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 76 ? 1_555 81.6 ? 4 O ? F HOH . ? A HOH 74 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 77 ? 1_555 90.8 ? 5 O ? F HOH . ? A HOH 75 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 77 ? 1_555 91.3 ? 6 O ? F HOH . ? A HOH 76 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 77 ? 1_555 172.5 ? 7 O ? F HOH . ? A HOH 74 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 78 ? 1_555 92.2 ? 8 O ? F HOH . ? A HOH 75 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 78 ? 1_555 81.7 ? 9 O ? F HOH . ? A HOH 76 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 78 ? 1_555 88.4 ? 10 O ? F HOH . ? A HOH 77 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 78 ? 1_555 93.1 ? 11 O ? F HOH . ? A HOH 74 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 79 ? 1_555 89.9 ? 12 O ? F HOH . ? A HOH 75 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 79 ? 1_555 95.9 ? 13 O ? F HOH . ? A HOH 76 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 79 ? 1_555 85.4 ? 14 O ? F HOH . ? A HOH 77 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 79 ? 1_555 92.9 ? 15 O ? F HOH . ? A HOH 78 ? 1_555 MG ? B MG . ? A MG 11 ? 1_555 O ? F HOH . ? A HOH 79 ? 1_555 173.6 ? 16 O ? F HOH . ? A HOH 80 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 80 ? 2_555 78.5 ? 17 O ? F HOH . ? A HOH 80 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 81 ? 1_555 169.5 ? 18 O ? F HOH . ? A HOH 80 ? 2_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 81 ? 1_555 91.3 ? 19 O ? F HOH . ? A HOH 80 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 81 ? 2_555 91.3 ? 20 O ? F HOH . ? A HOH 80 ? 2_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 81 ? 2_555 169.5 ? 21 O ? F HOH . ? A HOH 81 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 81 ? 2_555 99.0 ? 22 O ? F HOH . ? A HOH 80 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 1_555 93.8 ? 23 O ? F HOH . ? A HOH 80 ? 2_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 1_555 96.7 ? 24 O ? F HOH . ? A HOH 81 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 1_555 84.9 ? 25 O ? F HOH . ? A HOH 81 ? 2_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 1_555 86.4 ? 26 O ? F HOH . ? A HOH 80 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 2_555 96.7 ? 27 O ? F HOH . ? A HOH 80 ? 2_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 2_555 93.8 ? 28 O ? F HOH . ? A HOH 81 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 2_555 86.4 ? 29 O ? F HOH . ? A HOH 81 ? 2_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 2_555 84.9 ? 30 O ? F HOH . ? A HOH 82 ? 1_555 MG ? C MG . ? A MG 12 ? 1_555 O ? F HOH . ? A HOH 82 ? 2_555 166.5 ? 31 O ? F HOH . ? A HOH 15 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 83 ? 1_555 176.9 ? 32 O ? F HOH . ? A HOH 15 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 84 ? 1_555 92.9 ? 33 O ? F HOH . ? A HOH 83 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 84 ? 1_555 87.8 ? 34 O ? F HOH . ? A HOH 15 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 85 ? 1_555 78.3 ? 35 O ? F HOH . ? A HOH 83 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 85 ? 1_555 100.1 ? 36 O ? F HOH . ? A HOH 84 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 85 ? 1_555 159.8 ? 37 O ? F HOH . ? A HOH 15 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 86 ? 1_555 84.9 ? 38 O ? F HOH . ? A HOH 83 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 86 ? 1_555 97.7 ? 39 O ? F HOH . ? A HOH 84 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 86 ? 1_555 111.9 ? 40 O ? F HOH . ? A HOH 85 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 86 ? 1_555 85.7 ? 41 O ? F HOH . ? A HOH 15 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 87 ? 1_555 87.6 ? 42 O ? F HOH . ? A HOH 83 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 87 ? 1_555 89.5 ? 43 O ? F HOH . ? A HOH 84 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 87 ? 1_555 82.9 ? 44 O ? F HOH . ? A HOH 85 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 87 ? 1_555 78.7 ? 45 O ? F HOH . ? A HOH 86 ? 1_555 MG ? D MG . ? A MG 13 ? 1_555 O ? F HOH . ? A HOH 87 ? 1_555 163.7 ? 46 O ? F HOH . ? A HOH 16 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 17 ? 1_555 169.1 ? 47 O ? F HOH . ? A HOH 16 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 89 ? 1_555 96.3 ? 48 O ? F HOH . ? A HOH 17 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 89 ? 1_555 86.1 ? 49 O ? F HOH . ? A HOH 16 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 90 ? 1_555 91.8 ? 50 O ? F HOH . ? A HOH 17 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 90 ? 1_555 77.5 ? 51 O ? F HOH . ? A HOH 89 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 90 ? 1_555 110.8 ? 52 O ? F HOH . ? A HOH 16 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 91 ? 1_555 92.1 ? 53 O ? F HOH . ? A HOH 17 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 91 ? 1_555 98.7 ? 54 O ? F HOH . ? A HOH 89 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 91 ? 1_555 78.2 ? 55 O ? F HOH . ? A HOH 90 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 91 ? 1_555 169.8 ? 56 O ? F HOH . ? A HOH 16 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 92 ? 1_555 81.0 ? 57 O ? F HOH . ? A HOH 17 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 92 ? 1_555 99.3 ? 58 O ? F HOH . ? A HOH 89 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 92 ? 1_555 165.1 ? 59 O ? F HOH . ? A HOH 90 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 92 ? 1_555 84.1 ? 60 O ? F HOH . ? A HOH 91 ? 1_555 MG ? E MG . ? A MG 14 ? 1_555 O ? F HOH . ? A HOH 92 ? 1_555 87.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1991-10-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2023-07-26 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation ? 'Coordinates and associated ncs operations (if present) transformed into standard crystal frame' # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_sites 3 4 'Structure model' database_2 4 4 'Structure model' database_PDB_matrix 5 4 'Structure model' pdbx_database_remark 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' pdbx_validate_rmsd_angle 8 4 'Structure model' pdbx_validate_rmsd_bond 9 4 'Structure model' struct_conn 10 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_z' 3 4 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 4 4 'Structure model' '_atom_sites.fract_transf_matrix[1][3]' 5 4 'Structure model' '_atom_sites.fract_transf_matrix[3][1]' 6 4 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' 9 4 'Structure model' '_database_PDB_matrix.origx[1][1]' 10 4 'Structure model' '_database_PDB_matrix.origx[1][3]' 11 4 'Structure model' '_database_PDB_matrix.origx[3][1]' 12 4 'Structure model' '_database_PDB_matrix.origx[3][3]' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_pdbx_validate_rmsd_angle.angle_deviation' 19 4 'Structure model' '_pdbx_validate_rmsd_angle.angle_value' 20 4 'Structure model' '_pdbx_validate_rmsd_bond.bond_deviation' 21 4 'Structure model' '_pdbx_validate_rmsd_bond.bond_value' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_symmetry' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' ref 'X-RAY DIFFRACTION' # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.386 1.446 -0.060 0.010 N 2 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? 1.495 1.420 0.075 0.011 N 3 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.405 1.335 0.070 0.007 N 4 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.490 1.420 0.070 0.011 N 5 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.348 1.391 -0.043 0.007 N 6 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.512 1.420 0.092 0.011 N 7 1 N1 A DG 10 ? ? C2 A DG 10 ? ? 1.323 1.373 -0.050 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 2 ? ? "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 103.75 109.40 -5.65 0.80 N 2 1 "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 97.18 102.40 -5.22 0.80 N 3 1 N3 A DC 2 ? ? C4 A DC 2 ? ? C5 A DC 2 ? ? 119.47 121.90 -2.43 0.40 N 4 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 123.60 118.60 5.00 0.60 N 5 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 123.24 129.30 -6.06 0.50 N 6 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 113.82 110.60 3.22 0.50 N 7 1 C6 A DA 4 ? ? N1 A DA 4 ? ? C2 A DA 4 ? ? 124.71 118.60 6.11 0.60 N 8 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 124.80 129.30 -4.50 0.50 N 9 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 113.25 117.70 -4.45 0.50 N 10 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 123.29 118.60 4.69 0.60 N 11 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 131.65 119.60 12.05 1.50 N 12 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 104.59 109.40 -4.81 0.80 N 13 1 P A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 106.27 120.90 -14.63 1.60 N 14 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.15 108.30 3.85 0.30 N 15 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 117.90 121.90 -4.00 0.40 N 16 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 125.41 120.20 5.21 0.70 N 17 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 118.34 110.50 7.84 1.10 Y 18 1 OP1 A DT 7 ? ? P A DT 7 ? ? OP2 A DT 7 ? ? 131.95 119.60 12.35 1.50 N 19 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 103.57 109.40 -5.83 0.80 N 20 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 102.92 108.00 -5.08 0.70 N 21 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.41 115.20 4.21 0.60 N 22 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.99 127.20 -4.21 0.60 N 23 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.17 122.90 -3.73 0.60 N 24 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 103.75 108.00 -4.25 0.70 N # _ndb_struct_conf_na.entry_id 5DNB _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 10 2_656 0.169 -0.123 0.175 -6.213 -9.315 -1.183 1 A_DC1:DG10_A A 1 ? A 10 ? 19 1 1 A DC 2 1_555 A DG 9 2_656 0.196 -0.126 0.008 3.429 -8.663 -1.390 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DA 3 1_555 A DT 8 2_656 -0.080 -0.142 0.024 3.102 -7.935 2.395 3 A_DA3:DT8_A A 3 ? A 8 ? 20 1 1 A DA 4 1_555 A DT 7 2_656 0.059 -0.113 0.294 7.248 -12.048 3.983 4 A_DA4:DT7_A A 4 ? A 7 ? 20 1 1 A DC 5 1_555 A DG 6 2_656 0.280 -0.163 -0.105 10.507 -13.258 -0.036 5 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 2_656 -0.280 -0.163 -0.105 -10.507 -13.258 -0.036 6 A_DG6:DC5_A A 6 ? A 5 ? 19 1 1 A DT 7 1_555 A DA 4 2_656 -0.059 -0.113 0.294 -7.248 -12.048 3.983 7 A_DT7:DA4_A A 7 ? A 4 ? 20 1 1 A DT 8 1_555 A DA 3 2_656 0.080 -0.142 0.024 -3.102 -7.935 2.395 8 A_DT8:DA3_A A 8 ? A 3 ? 20 1 1 A DG 9 1_555 A DC 2 2_656 -0.196 -0.126 0.008 -3.429 -8.663 -1.390 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1 1 A DG 10 1_555 A DC 1 2_656 -0.169 -0.123 0.175 6.213 -9.315 -1.183 10 A_DG10:DC1_A A 10 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 10 2_656 A DC 2 1_555 A DG 9 2_656 -0.388 0.635 3.164 3.003 5.607 27.547 0.023 1.479 3.169 11.579 -6.202 28.258 1 AA_DC1DC2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DC 2 1_555 A DG 9 2_656 A DA 3 1_555 A DT 8 2_656 0.317 2.819 3.318 1.944 -6.390 49.643 3.777 -0.239 2.966 -7.571 -2.303 50.062 2 AA_DC2DA3:DT8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DA 3 1_555 A DT 8 2_656 A DA 4 1_555 A DT 7 2_656 0.460 0.424 3.272 -2.785 8.289 29.078 -0.880 -1.447 3.211 16.056 5.395 30.337 3 AA_DA3DA4:DT7DT8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DA 4 1_555 A DT 7 2_656 A DC 5 1_555 A DG 6 2_656 0.295 -0.363 3.267 2.750 -1.249 31.357 -0.435 -0.028 3.292 -2.303 -5.074 31.499 4 AA_DA4DC5:DG6DT7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DC 5 1_555 A DG 6 2_656 A DG 6 1_555 A DC 5 2_656 0.000 -0.018 3.785 0.000 7.521 42.147 -0.896 0.000 3.729 10.359 0.000 42.783 5 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DG 6 1_555 A DC 5 2_656 A DT 7 1_555 A DA 4 2_656 -0.295 -0.363 3.267 -2.750 -1.249 31.357 -0.435 0.028 3.292 -2.303 5.074 31.499 6 AA_DG6DT7:DA4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DT 7 1_555 A DA 4 2_656 A DT 8 1_555 A DA 3 2_656 -0.460 0.424 3.272 2.785 8.289 29.078 -0.880 1.447 3.211 16.056 -5.395 30.337 7 AA_DT7DT8:DA3DA4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DT 8 1_555 A DA 3 2_656 A DG 9 1_555 A DC 2 2_656 -0.317 2.819 3.318 -1.944 -6.390 49.643 3.777 0.239 2.966 -7.571 2.303 50.062 8 AA_DT8DG9:DC2DA3_AA A 8 ? A 3 ? A 9 ? A 2 ? 1 A DG 9 1_555 A DC 2 2_656 A DG 10 1_555 A DC 1 2_656 0.388 0.635 3.164 -3.003 5.607 27.547 0.023 -1.479 3.169 11.579 6.202 28.258 9 AA_DG9DG10:DC1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH #