data_5DNG # _entry.id 5DNG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5DNG WWPDB D_1000213447 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2016-11-02 _pdbx_database_PDB_obs_spr.pdb_id 5TRB _pdbx_database_PDB_obs_spr.replace_pdb_id 5DNG _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DNG _pdbx_database_status.recvd_initial_deposition_date 2015-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Foglizzo, M.' 1 'Middleton, A.J.' 2 'Day, C.L.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 428 _citation.language ? _citation.page_first 4073 _citation.page_last 4086 _citation.title 'Structure and Function of the RING Domains of RNF20 and RNF40, Dimeric E3 Ligases that Monoubiquitylate Histone H2B.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2016.07.025 _citation.pdbx_database_id_PubMed 27569044 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Foglizzo, M.' 1 primary 'Middleton, A.J.' 2 primary 'Day, C.L.' 3 # _cell.entry_id 5DNG _cell.length_a 34.800 _cell.length_b 61.250 _cell.length_c 78.720 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DNG _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase BRE1A' 8715.255 1 6.3.2.- ? 'Zinc finger containing residues 906-975' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hBRE1,RING finger protein 20' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPLGSDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG _entity_poly.pdbx_seq_one_letter_code_can GPLGSDEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 GLU n 1 8 ILE n 1 9 LEU n 1 10 MET n 1 11 GLU n 1 12 GLU n 1 13 ILE n 1 14 LYS n 1 15 ASP n 1 16 TYR n 1 17 LYS n 1 18 ALA n 1 19 ARG n 1 20 LEU n 1 21 THR n 1 22 CYS n 1 23 PRO n 1 24 CYS n 1 25 CYS n 1 26 ASN n 1 27 MET n 1 28 ARG n 1 29 LYS n 1 30 LYS n 1 31 ASP n 1 32 ALA n 1 33 VAL n 1 34 LEU n 1 35 THR n 1 36 LYS n 1 37 CYS n 1 38 PHE n 1 39 HIS n 1 40 VAL n 1 41 PHE n 1 42 CYS n 1 43 PHE n 1 44 GLU n 1 45 CYS n 1 46 VAL n 1 47 LYS n 1 48 THR n 1 49 ARG n 1 50 TYR n 1 51 ASP n 1 52 THR n 1 53 ARG n 1 54 GLN n 1 55 ARG n 1 56 LYS n 1 57 CYS n 1 58 PRO n 1 59 LYS n 1 60 CYS n 1 61 ASN n 1 62 ALA n 1 63 ALA n 1 64 PHE n 1 65 GLY n 1 66 ALA n 1 67 ASN n 1 68 ASP n 1 69 PHE n 1 70 HIS n 1 71 ARG n 1 72 ILE n 1 73 TYR n 1 74 ILE n 1 75 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 75 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RNF20, BRE1A' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRE1A_HUMAN _struct_ref.pdbx_db_accession Q5VTR2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DEILMEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG _struct_ref.pdbx_align_begin 906 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DNG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 75 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5VTR2 _struct_ref_seq.db_align_beg 906 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 975 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 906 _struct_ref_seq.pdbx_auth_seq_align_end 975 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5DNG GLY A 1 ? UNP Q5VTR2 ? ? 'expression tag' 901 1 1 5DNG PRO A 2 ? UNP Q5VTR2 ? ? 'expression tag' 902 2 1 5DNG LEU A 3 ? UNP Q5VTR2 ? ? 'expression tag' 903 3 1 5DNG GLY A 4 ? UNP Q5VTR2 ? ? 'expression tag' 904 4 1 5DNG SER A 5 ? UNP Q5VTR2 ? ? 'expression tag' 905 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DNG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;8% (w/v) PEG 4000 (polyethylene glycol 4000), 16% (v/v) glycerol, 0.02 M of each carboxylic acid (sodium formate, ammonium acetate, trisodium citrate and sodium potassium L-tartrate) and 0.1 M MES/Imidazole pH 6.5 ; _exptl_crystal_grow.pdbx_pH_range 6.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-02-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.2816 1.0 2 1.2856 1.0 3 0.9537 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '1.2816, 1.2856, 0.9537' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5DNG _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.360 _reflns.d_resolution_high 1.800 _reflns.number_obs 8129 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 0.106 _reflns_shell.d_res_high 1.71 _reflns_shell.d_res_low 1.80 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 1.6 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy 9.1 _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5DNG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8128 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.36 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.229 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.350 _refine.ls_number_reflns_R_free 435 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.46 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 566 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 598 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 39.36 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 2.06 _refine_ls_shell.number_reflns_R_work 2518 _refine_ls_shell.R_factor_R_work 0.2424 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.2708 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 141 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5DNG _struct.title 'Crystal structure of the RNF20 RING domain' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase BRE1A (E.C.6.3.2.-)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DNG _struct_keywords.text LIGASE _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 7 ? THR A 21 ? GLU A 907 THR A 921 1 ? 15 HELX_P HELX_P2 AA2 CYS A 42 ? THR A 52 ? CYS A 942 THR A 952 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 22 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 922 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.247 ? metalc2 metalc ? ? A CYS 25 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 925 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.320 ? metalc3 metalc ? ? A CYS 37 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 937 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.227 ? metalc4 metalc ? ? A HIS 39 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 939 A ZN 1002 1_555 ? ? ? ? ? ? ? 1.990 ? metalc5 metalc ? ? A CYS 42 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 942 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.303 ? metalc6 metalc ? ? A CYS 45 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 945 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.340 ? metalc7 metalc ? ? A CYS 57 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 957 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.172 ? metalc8 metalc ? ? A CYS 60 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 960 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.374 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 40 ? PHE A 41 ? VAL A 940 PHE A 941 AA1 2 ALA A 32 ? LEU A 34 ? ALA A 932 LEU A 934 AA1 3 PHE A 69 ? ARG A 71 ? PHE A 969 ARG A 971 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE A 41 ? O PHE A 941 N ALA A 32 ? N ALA A 932 AA1 2 3 N VAL A 33 ? N VAL A 933 O HIS A 70 ? O HIS A 970 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1001 ? 4 'binding site for residue ZN A 1001' AC2 Software A ZN 1002 ? 4 'binding site for residue ZN A 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 22 ? CYS A 922 . ? 1_555 ? 2 AC1 4 CYS A 25 ? CYS A 925 . ? 1_555 ? 3 AC1 4 CYS A 42 ? CYS A 942 . ? 1_555 ? 4 AC1 4 CYS A 45 ? CYS A 945 . ? 1_555 ? 5 AC2 4 CYS A 37 ? CYS A 937 . ? 1_555 ? 6 AC2 4 HIS A 39 ? HIS A 939 . ? 1_555 ? 7 AC2 4 CYS A 57 ? CYS A 957 . ? 1_555 ? 8 AC2 4 CYS A 60 ? CYS A 960 . ? 1_555 ? # _atom_sites.entry_id 5DNG _atom_sites.fract_transf_matrix[1][1] 0.028736 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016327 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012703 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 901 ? ? ? A . n A 1 2 PRO 2 902 ? ? ? A . n A 1 3 LEU 3 903 ? ? ? A . n A 1 4 GLY 4 904 ? ? ? A . n A 1 5 SER 5 905 ? ? ? A . n A 1 6 ASP 6 906 ? ? ? A . n A 1 7 GLU 7 907 907 GLU GLU A . n A 1 8 ILE 8 908 908 ILE ILE A . n A 1 9 LEU 9 909 909 LEU LEU A . n A 1 10 MET 10 910 910 MET MET A . n A 1 11 GLU 11 911 911 GLU GLU A . n A 1 12 GLU 12 912 912 GLU GLU A . n A 1 13 ILE 13 913 913 ILE ILE A . n A 1 14 LYS 14 914 914 LYS LYS A . n A 1 15 ASP 15 915 915 ASP ASP A . n A 1 16 TYR 16 916 916 TYR TYR A . n A 1 17 LYS 17 917 917 LYS LYS A . n A 1 18 ALA 18 918 918 ALA ALA A . n A 1 19 ARG 19 919 919 ARG ARG A . n A 1 20 LEU 20 920 920 LEU LEU A . n A 1 21 THR 21 921 921 THR THR A . n A 1 22 CYS 22 922 922 CYS CYS A . n A 1 23 PRO 23 923 923 PRO PRO A . n A 1 24 CYS 24 924 924 CYS CYS A . n A 1 25 CYS 25 925 925 CYS CYS A . n A 1 26 ASN 26 926 926 ASN ASN A . n A 1 27 MET 27 927 927 MET MET A . n A 1 28 ARG 28 928 928 ARG ARG A . n A 1 29 LYS 29 929 929 LYS LYS A . n A 1 30 LYS 30 930 930 LYS LYS A . n A 1 31 ASP 31 931 931 ASP ASP A . n A 1 32 ALA 32 932 932 ALA ALA A . n A 1 33 VAL 33 933 933 VAL VAL A . n A 1 34 LEU 34 934 934 LEU LEU A . n A 1 35 THR 35 935 935 THR THR A . n A 1 36 LYS 36 936 936 LYS LYS A . n A 1 37 CYS 37 937 937 CYS CYS A . n A 1 38 PHE 38 938 938 PHE PHE A . n A 1 39 HIS 39 939 939 HIS HIS A . n A 1 40 VAL 40 940 940 VAL VAL A . n A 1 41 PHE 41 941 941 PHE PHE A . n A 1 42 CYS 42 942 942 CYS CYS A . n A 1 43 PHE 43 943 943 PHE PHE A . n A 1 44 GLU 44 944 944 GLU GLU A . n A 1 45 CYS 45 945 945 CYS CYS A . n A 1 46 VAL 46 946 946 VAL VAL A . n A 1 47 LYS 47 947 947 LYS LYS A . n A 1 48 THR 48 948 948 THR THR A . n A 1 49 ARG 49 949 949 ARG ARG A . n A 1 50 TYR 50 950 950 TYR TYR A . n A 1 51 ASP 51 951 951 ASP ASP A . n A 1 52 THR 52 952 952 THR THR A . n A 1 53 ARG 53 953 953 ARG ARG A . n A 1 54 GLN 54 954 954 GLN GLN A . n A 1 55 ARG 55 955 955 ARG ARG A . n A 1 56 LYS 56 956 956 LYS LYS A . n A 1 57 CYS 57 957 957 CYS CYS A . n A 1 58 PRO 58 958 958 PRO PRO A . n A 1 59 LYS 59 959 959 LYS LYS A . n A 1 60 CYS 60 960 960 CYS CYS A . n A 1 61 ASN 61 961 961 ASN ASN A . n A 1 62 ALA 62 962 962 ALA ALA A . n A 1 63 ALA 63 963 963 ALA ALA A . n A 1 64 PHE 64 964 964 PHE PHE A . n A 1 65 GLY 65 965 965 GLY GLY A . n A 1 66 ALA 66 966 966 ALA ALA A . n A 1 67 ASN 67 967 967 ASN ASN A . n A 1 68 ASP 68 968 968 ASP ASP A . n A 1 69 PHE 69 969 969 PHE PHE A . n A 1 70 HIS 70 970 970 HIS HIS A . n A 1 71 ARG 71 971 971 ARG ARG A . n A 1 72 ILE 72 972 972 ILE ILE A . n A 1 73 TYR 73 973 973 TYR TYR A . n A 1 74 ILE 74 974 974 ILE ILE A . n A 1 75 GLY 75 975 975 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1001 1 ZN ZN A . C 2 ZN 1 1002 2 ZN ZN A . D 3 HOH 1 1101 22 HOH HOH A . D 3 HOH 2 1102 8 HOH HOH A . D 3 HOH 3 1103 57 HOH HOH A . D 3 HOH 4 1104 26 HOH HOH A . D 3 HOH 5 1105 44 HOH HOH A . D 3 HOH 6 1106 7 HOH HOH A . D 3 HOH 7 1107 1 HOH HOH A . D 3 HOH 8 1108 56 HOH HOH A . D 3 HOH 9 1109 2 HOH HOH A . D 3 HOH 10 1110 13 HOH HOH A . D 3 HOH 11 1111 10 HOH HOH A . D 3 HOH 12 1112 3 HOH HOH A . D 3 HOH 13 1113 9 HOH HOH A . D 3 HOH 14 1114 11 HOH HOH A . D 3 HOH 15 1115 33 HOH HOH A . D 3 HOH 16 1116 20 HOH HOH A . D 3 HOH 17 1117 21 HOH HOH A . D 3 HOH 18 1118 25 HOH HOH A . D 3 HOH 19 1119 15 HOH HOH A . D 3 HOH 20 1120 28 HOH HOH A . D 3 HOH 21 1121 4 HOH HOH A . D 3 HOH 22 1122 30 HOH HOH A . D 3 HOH 23 1123 42 HOH HOH A . D 3 HOH 24 1124 12 HOH HOH A . D 3 HOH 25 1125 6 HOH HOH A . D 3 HOH 26 1126 24 HOH HOH A . D 3 HOH 27 1127 16 HOH HOH A . D 3 HOH 28 1128 52 HOH HOH A . D 3 HOH 29 1129 18 HOH HOH A . D 3 HOH 30 1130 59 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1840 ? 1 MORE -18 ? 1 'SSA (A^2)' 8610 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 17.4000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 78.7200000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 22 ? A CYS 922 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 25 ? A CYS 925 ? 1_555 108.7 ? 2 SG ? A CYS 22 ? A CYS 922 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 42 ? A CYS 942 ? 1_555 113.0 ? 3 SG ? A CYS 25 ? A CYS 925 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 42 ? A CYS 942 ? 1_555 110.8 ? 4 SG ? A CYS 22 ? A CYS 922 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 45 ? A CYS 945 ? 1_555 118.8 ? 5 SG ? A CYS 25 ? A CYS 925 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 45 ? A CYS 945 ? 1_555 108.1 ? 6 SG ? A CYS 42 ? A CYS 942 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 SG ? A CYS 45 ? A CYS 945 ? 1_555 96.7 ? 7 SG ? A CYS 37 ? A CYS 937 ? 1_555 ZN ? C ZN . ? A ZN 1002 ? 1_555 ND1 ? A HIS 39 ? A HIS 939 ? 1_555 105.1 ? 8 SG ? A CYS 37 ? A CYS 937 ? 1_555 ZN ? C ZN . ? A ZN 1002 ? 1_555 SG ? A CYS 57 ? A CYS 957 ? 1_555 112.7 ? 9 ND1 ? A HIS 39 ? A HIS 939 ? 1_555 ZN ? C ZN . ? A ZN 1002 ? 1_555 SG ? A CYS 57 ? A CYS 957 ? 1_555 110.2 ? 10 SG ? A CYS 37 ? A CYS 937 ? 1_555 ZN ? C ZN . ? A ZN 1002 ? 1_555 SG ? A CYS 60 ? A CYS 960 ? 1_555 108.4 ? 11 ND1 ? A HIS 39 ? A HIS 939 ? 1_555 ZN ? C ZN . ? A ZN 1002 ? 1_555 SG ? A CYS 60 ? A CYS 960 ? 1_555 110.1 ? 12 SG ? A CYS 57 ? A CYS 957 ? 1_555 ZN ? C ZN . ? A ZN 1002 ? 1_555 SG ? A CYS 60 ? A CYS 960 ? 1_555 110.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-14 2 'Structure model' 1 1 2016-10-19 3 'Structure model' 1 2 2016-11-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? RESOLVE ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.8.4_1496)' 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 927 ? ? -140.32 -60.79 2 1 ASP A 931 ? ? -161.41 31.80 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 901 ? A GLY 1 2 1 Y 1 A PRO 902 ? A PRO 2 3 1 Y 1 A LEU 903 ? A LEU 3 4 1 Y 1 A GLY 904 ? A GLY 4 5 1 Y 1 A SER 905 ? A SER 5 6 1 Y 1 A ASP 906 ? A ASP 6 # _pdbx_audit_support.funding_organization 'Royal Society of New Zealand' _pdbx_audit_support.country 'New Zealand' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH #