data_5DO5 # _entry.id 5DO5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DO5 pdb_00005do5 10.2210/pdb5do5/pdb WWPDB D_1000213378 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DO5 _pdbx_database_status.recvd_initial_deposition_date 2015-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pallan, P.S.' 1 'Egli, M.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Crystal Structure of 2'-Fluoro-RNA bearing a phosphorodithioate ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pallan, P.S.' 1 ? primary 'Egli, M.' 2 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 127.500 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5DO5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.237 _cell.length_a_esd ? _cell.length_b 34.366 _cell.length_b_esd ? _cell.length_c 31.976 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*(AF2)P*(2SG)P*CP*G)-3') ; 3887.498 1 ? ? ? ? 2 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CGCGAAUU(AF2)(2SG)CG' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUXXCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 A n 1 6 A n 1 7 U n 1 8 U n 1 9 AF2 n 1 10 2SG n 1 11 C n 1 12 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5DO5 _struct_ref.pdbx_db_accession 5DO5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DO5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5DO5 _struct_ref_seq.db_align_beg 101 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 112 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 101 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2SG 'RNA linking' n 'guanosine phosphorodithioate' ? 'C10 H16 N5 O6 P S2' 397.368 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AF2 'DNA linking' n ;2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 F N5 O6 P' 349.212 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DO5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium cacodylate, pH 6.0, 40 mM sodium chloride, 10 mM magnesium chloride, 6 mM spermine tetrahydrochloride, and 5% v/v MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97857 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DO5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.200 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11122 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.700 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 44.679 _reflns.pdbx_netI_over_sigmaI 11.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.854 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.077 _reflns.pdbx_Rpim_I_all 0.032 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 62980 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.200 1.240 ? ? ? ? ? 1050 ? 94.000 ? ? ? ? 0.293 ? ? ? ? ? ? ? ? 2.600 ? 0.751 ? ? 0.361 0.209 0 1 1 0.875 ? 1.240 1.290 ? ? ? ? ? 1116 ? 99.200 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 3.400 ? 0.875 ? ? 0.314 0.165 0 2 1 0.911 ? 1.290 1.350 ? ? ? ? ? 1090 ? 100.000 ? ? ? ? 0.288 ? ? ? ? ? ? ? ? 4.200 ? 0.878 ? ? 0.326 0.150 0 3 1 0.951 ? 1.350 1.420 ? ? ? ? ? 1132 ? 100.000 ? ? ? ? 0.317 ? ? ? ? ? ? ? ? 5.600 ? 0.927 ? ? 0.347 0.140 0 4 1 0.962 ? 1.420 1.510 ? ? ? ? ? 1102 ? 99.900 ? ? ? ? 0.269 ? ? ? ? ? ? ? ? 6.800 ? 1.139 ? ? 0.291 0.111 0 5 1 0.974 ? 1.510 1.630 ? ? ? ? ? 1116 ? 100.000 ? ? ? ? 0.164 ? ? ? ? ? ? ? ? 6.900 ? 1.592 ? ? 0.177 0.067 0 6 1 0.988 ? 1.630 1.790 ? ? ? ? ? 1130 ? 100.000 ? ? ? ? 0.110 ? ? ? ? ? ? ? ? 7.000 ? 1.932 ? ? 0.119 0.045 0 7 1 0.995 ? 1.790 2.050 ? ? ? ? ? 1115 ? 100.000 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 6.900 ? 2.378 ? ? 0.097 0.037 0 8 1 0.994 ? 2.050 2.590 ? ? ? ? ? 1121 ? 100.000 ? ? ? ? 0.071 ? ? ? ? ? ? ? ? 6.700 ? 2.915 ? ? 0.077 0.030 0 9 1 0.995 ? 2.590 50.000 ? ? ? ? ? 1150 ? 99.600 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 6.200 ? 3.216 ? ? 0.060 0.026 0 10 1 0.995 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 152.450 _refine.B_iso_mean 19.0865 _refine.B_iso_min 7.020 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DO5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.20 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11102 _refine.ls_number_reflns_R_free 553 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.3 _refine.ls_percent_reflns_R_free 5 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2297 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.19 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.2297 _refine.ls_wR_factor_R_work 0.19 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ID:2Q1R' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 255 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 322 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 50 # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 5DO5 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.19 _pdbx_refine.free_R_factor_no_cutoff 0.2297 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 5DO5 _struct.title ;Crystal Structure of 2'-Fluoro-RNA bearing a phosphorodithioate ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DO5 _struct_keywords.text ;RNA, 2'-fluoro-RNA, phosphorodithioate RNA, PS2-RNA ; _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 8 "O3'" A ? ? 1_555 A AF2 9 P A ? A U 108 A AF2 109 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale2 covale both ? A U 8 "O3'" B ? ? 1_555 A AF2 9 P B ? A U 108 A AF2 109 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale3 covale one ? A AF2 9 "O3'" A ? ? 1_555 A 2SG 10 P ? ? A AF2 109 A 2SG 110 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale4 covale one ? A AF2 9 "O3'" B ? ? 1_555 A 2SG 10 P ? ? A AF2 109 A 2SG 110 1_555 ? ? ? ? ? ? ? 1.568 ? ? covale5 covale both ? A 2SG 10 "O3'" ? ? ? 1_555 A C 11 P ? ? A 2SG 110 A C 111 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 12 N1 ? ? A C 101 A G 112 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 12 O6 ? ? A C 101 A G 112 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 12 N2 ? ? A C 101 A G 112 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 11 N3 ? ? A G 102 A C 111 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 11 O2 ? ? A G 102 A C 111 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 11 N4 ? ? A G 102 A C 111 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A 2SG 10 N1 ? ? A C 103 A 2SG 110 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A 2SG 10 O6 ? ? A C 103 A 2SG 110 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A 2SG 10 N2 ? ? A C 103 A 2SG 110 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A AF2 9 N1 A ? A G 104 A AF2 109 2_556 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A AF2 9 N6 A ? A G 104 A AF2 109 2_556 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 8 N3 A ? A A 105 A U 108 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 8 O4 A ? A A 105 A U 108 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 A ? ? 1_555 A U 7 N3 A ? A A 106 A U 107 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 A ? ? 1_555 A U 7 O4 A ? A A 106 A U 107 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 A ? ? 1_555 A A 6 N1 A ? A U 107 A A 106 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 A ? ? 1_555 A A 6 N6 A ? A U 107 A A 106 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 N3 A ? ? 1_555 A A 5 N1 ? ? A U 108 A A 105 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 O4 A ? ? 1_555 A A 5 N6 ? ? A U 108 A A 105 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A AF2 9 N1 A ? ? 1_555 A G 4 N1 ? ? A AF2 109 A G 104 2_556 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A AF2 9 N6 A ? ? 1_555 A G 4 O6 ? ? A AF2 109 A G 104 2_556 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog22 hydrog ? ? A 2SG 10 N1 ? ? ? 1_555 A C 3 N3 ? ? A 2SG 110 A C 103 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A 2SG 10 N2 ? ? ? 1_555 A C 3 O2 ? ? A 2SG 110 A C 103 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A 2SG 10 O6 ? ? ? 1_555 A C 3 N4 ? ? A 2SG 110 A C 103 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 2 N1 ? ? A C 111 A G 102 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 2 O6 ? ? A C 111 A G 102 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 2 N2 ? ? A C 111 A G 102 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 1 N3 ? ? A G 112 A C 101 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 1 O2 ? ? A G 112 A C 101 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 1 N4 ? ? A G 112 A C 101 2_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5DO5 _atom_sites.fract_transf_matrix[1][1] 0.024250 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.018608 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029099 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039419 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 101 101 C CYT A . n A 1 2 G 2 102 102 G GUA A . n A 1 3 C 3 103 103 C CYT A . n A 1 4 G 4 104 104 G GUA A . n A 1 5 A 5 105 105 A ADE A . n A 1 6 A 6 106 106 A ADE A . n A 1 7 U 7 107 107 U URI A . n A 1 8 U 8 108 108 U URI A . n A 1 9 AF2 9 109 109 AF2 AMF A . n A 1 10 2SG 10 110 110 2SG GUS A . n A 1 11 C 11 111 111 C CYT A . n A 1 12 G 12 112 112 G GUA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 263 HOH HOH A . B 2 HOH 2 202 266 HOH HOH A . B 2 HOH 3 203 226 HOH HOH A . B 2 HOH 4 204 239 HOH HOH A . B 2 HOH 5 205 201 HOH HOH A . B 2 HOH 6 206 232 HOH HOH A . B 2 HOH 7 207 224 HOH HOH A . B 2 HOH 8 208 252 HOH HOH A . B 2 HOH 9 209 235 HOH HOH A . B 2 HOH 10 210 225 HOH HOH A . B 2 HOH 11 211 246 HOH HOH A . B 2 HOH 12 212 230 HOH HOH A . B 2 HOH 13 213 249 HOH HOH A . B 2 HOH 14 214 238 HOH HOH A . B 2 HOH 15 215 243 HOH HOH A . B 2 HOH 16 216 213 HOH HOH A . B 2 HOH 17 217 218 HOH HOH A . B 2 HOH 18 218 231 HOH HOH A . B 2 HOH 19 219 210 HOH HOH A . B 2 HOH 20 220 204 HOH HOH A . B 2 HOH 21 221 244 HOH HOH A . B 2 HOH 22 222 261 HOH HOH A . B 2 HOH 23 223 202 HOH HOH A . B 2 HOH 24 224 216 HOH HOH A . B 2 HOH 25 225 262 HOH HOH A . B 2 HOH 26 226 203 HOH HOH A . B 2 HOH 27 227 205 HOH HOH A . B 2 HOH 28 228 217 HOH HOH A . B 2 HOH 29 229 254 HOH HOH A . B 2 HOH 30 230 209 HOH HOH A . B 2 HOH 31 231 208 HOH HOH A . B 2 HOH 32 232 206 HOH HOH A . B 2 HOH 33 233 223 HOH HOH A . B 2 HOH 34 234 253 HOH HOH A . B 2 HOH 35 235 214 HOH HOH A . B 2 HOH 36 236 227 HOH HOH A . B 2 HOH 37 237 220 HOH HOH A . B 2 HOH 38 238 240 HOH HOH A . B 2 HOH 39 239 260 HOH HOH A . B 2 HOH 40 240 212 HOH HOH A . B 2 HOH 41 241 219 HOH HOH A . B 2 HOH 42 242 257 HOH HOH A . B 2 HOH 43 243 215 HOH HOH A . B 2 HOH 44 244 211 HOH HOH A . B 2 HOH 45 245 233 HOH HOH A . B 2 HOH 46 246 251 HOH HOH A . B 2 HOH 47 247 234 HOH HOH A . B 2 HOH 48 248 228 HOH HOH A . B 2 HOH 49 249 255 HOH HOH A . B 2 HOH 50 250 229 HOH HOH A . B 2 HOH 51 251 267 HOH HOH A . B 2 HOH 52 252 207 HOH HOH A . B 2 HOH 53 253 250 HOH HOH A . B 2 HOH 54 254 237 HOH HOH A . B 2 HOH 55 255 264 HOH HOH A . B 2 HOH 56 256 236 HOH HOH A . B 2 HOH 57 257 265 HOH HOH A . B 2 HOH 58 258 242 HOH HOH A . B 2 HOH 59 259 241 HOH HOH A . B 2 HOH 60 260 259 HOH HOH A . B 2 HOH 61 261 245 HOH HOH A . B 2 HOH 62 262 256 HOH HOH A . B 2 HOH 63 263 221 HOH HOH A . B 2 HOH 64 264 258 HOH HOH A . B 2 HOH 65 265 222 HOH HOH A . B 2 HOH 66 266 248 HOH HOH A . B 2 HOH 67 267 247 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1190 ? 1 MORE -2 ? 1 'SSA (A^2)' 4510 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -19.4657554540 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 25.3682664092 # _pdbx_point_symmetry.entry_id 5DO5 _pdbx_point_symmetry.Schoenflies_symbol C _pdbx_point_symmetry.circular_symmetry ? _pdbx_point_symmetry.H-M_notation ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 234 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-21 2 'Structure model' 1 1 2016-10-19 3 'Structure model' 1 2 2017-09-20 4 'Structure model' 1 3 2019-12-25 5 'Structure model' 1 4 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_struct_oper_list 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 4 'Structure model' '_pdbx_audit_support.funding_organization' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A C 101 ? ? "O2'" A C 101 ? ? 1.518 1.420 0.098 0.010 N 2 1 "C2'" A G 102 ? ? "O2'" A G 102 ? ? 1.501 1.420 0.081 0.010 N 3 1 "C2'" A A 106 ? B "O2'" A A 106 ? B 1.282 1.412 -0.130 0.013 N 4 1 "C2'" A U 107 ? A "O2'" A U 107 ? A 1.523 1.420 0.103 0.010 N 5 1 "C2'" A U 107 ? B "O2'" A U 107 ? B 1.622 1.420 0.202 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A G 102 ? ? "C5'" A G 102 ? ? "C4'" A G 102 ? ? 103.27 109.40 -6.13 0.80 N 2 1 C4 A A 105 ? ? C5 A A 105 ? ? C6 A A 105 ? ? 120.33 117.00 3.33 0.50 N 3 1 C5 A A 105 ? ? C6 A A 105 ? ? N1 A A 105 ? ? 114.24 117.70 -3.46 0.50 N 4 1 "C3'" A A 105 ? ? "O3'" A A 105 ? ? P A A 106 ? B 130.72 119.70 11.02 1.20 Y 5 1 P A A 106 ? B "O5'" A A 106 ? B "C5'" A A 106 ? B 109.60 120.90 -11.30 1.60 N 6 1 C8 A A 106 ? A N9 A A 106 ? A C4 A A 106 ? A 108.56 105.80 2.76 0.40 N 7 1 N1 A U 107 ? A C2 A U 107 ? A N3 A U 107 ? A 111.20 114.90 -3.70 0.60 N 8 1 N1 A U 107 ? B C2 A U 107 ? B N3 A U 107 ? B 119.37 114.90 4.47 0.60 N 9 1 C2 A U 107 ? A N3 A U 107 ? A C4 A U 107 ? A 131.56 127.00 4.56 0.60 N 10 1 C4 A U 107 ? B C5 A U 107 ? B C6 A U 107 ? B 124.53 119.70 4.83 0.60 N 11 1 C5 A U 107 ? A C6 A U 107 ? A N1 A U 107 ? A 126.03 122.70 3.33 0.50 N 12 1 C5 A U 107 ? B C6 A U 107 ? B N1 A U 107 ? B 119.28 122.70 -3.42 0.50 N 13 1 N1 A U 107 ? A C2 A U 107 ? A O2 A U 107 ? A 116.02 122.80 -6.78 0.70 N 14 1 N3 A U 107 ? A C2 A U 107 ? A O2 A U 107 ? A 132.78 122.20 10.58 0.70 N 15 1 N3 A U 107 ? B C4 A U 107 ? B O4 A U 107 ? B 111.02 119.40 -8.38 0.70 N 16 1 C5 A U 107 ? B C4 A U 107 ? B O4 A U 107 ? B 136.95 125.90 11.05 0.60 N 17 1 "O5'" A U 108 ? B "C5'" A U 108 ? B "C4'" A U 108 ? B 104.10 109.40 -5.30 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2SG P P N N 1 2SG SP1 S N N 2 2SG SP2 S N N 3 2SG "O5'" O N N 4 2SG "C5'" C N N 5 2SG "C4'" C N R 6 2SG "C3'" C N S 7 2SG "O3'" O N N 8 2SG "C2'" C N R 9 2SG "O2'" O N N 10 2SG "C1'" C N R 11 2SG "O4'" O N N 12 2SG N9 N Y N 13 2SG C4 C Y N 14 2SG C5 C Y N 15 2SG N7 N Y N 16 2SG C8 C Y N 17 2SG N3 N N N 18 2SG C2 C N N 19 2SG N2 N N N 20 2SG N1 N N N 21 2SG C6 C N N 22 2SG O6 O N N 23 2SG H1 H N N 24 2SG H2 H N N 25 2SG H3 H N N 26 2SG H4 H N N 27 2SG H5 H N N 28 2SG H6 H N N 29 2SG H7 H N N 30 2SG H8 H N N 31 2SG H9 H N N 32 2SG H10 H N N 33 2SG H11 H N N 34 2SG H13 H N N 35 2SG H14 H N N 36 2SG OP3 O N N 37 2SG H15 H N N 38 2SG H12 H N N 39 2SG H16 H N N 40 A OP3 O N N 41 A P P N N 42 A OP1 O N N 43 A OP2 O N N 44 A "O5'" O N N 45 A "C5'" C N N 46 A "C4'" C N R 47 A "O4'" O N N 48 A "C3'" C N S 49 A "O3'" O N N 50 A "C2'" C N R 51 A "O2'" O N N 52 A "C1'" C N R 53 A N9 N Y N 54 A C8 C Y N 55 A N7 N Y N 56 A C5 C Y N 57 A C6 C Y N 58 A N6 N N N 59 A N1 N Y N 60 A C2 C Y N 61 A N3 N Y N 62 A C4 C Y N 63 A HOP3 H N N 64 A HOP2 H N N 65 A "H5'" H N N 66 A "H5''" H N N 67 A "H4'" H N N 68 A "H3'" H N N 69 A "HO3'" H N N 70 A "H2'" H N N 71 A "HO2'" H N N 72 A "H1'" H N N 73 A H8 H N N 74 A H61 H N N 75 A H62 H N N 76 A H2 H N N 77 AF2 F F N N 78 AF2 P P N N 79 AF2 N1 N Y N 80 AF2 C2 C Y N 81 AF2 N3 N Y N 82 AF2 C4 C Y N 83 AF2 C5 C Y N 84 AF2 C6 C Y N 85 AF2 N6 N N N 86 AF2 N7 N Y N 87 AF2 C8 C Y N 88 AF2 N9 N Y N 89 AF2 "C1'" C N R 90 AF2 OP2 O N N 91 AF2 "C2'" C N R 92 AF2 OP1 O N N 93 AF2 "C3'" C N R 94 AF2 "O3'" O N N 95 AF2 "C4'" C N R 96 AF2 "O4'" O N N 97 AF2 "C5'" C N N 98 AF2 "O5'" O N N 99 AF2 H2 H N N 100 AF2 H8 H N N 101 AF2 "H5'" H N N 102 AF2 "H5'A" H N N 103 AF2 "H1'" H N N 104 AF2 "H2'" H N N 105 AF2 "H3'" H N N 106 AF2 "H4'" H N N 107 AF2 HN6 H N N 108 AF2 HN6A H N N 109 AF2 HOP2 H N N 110 AF2 "HO3'" H N N 111 AF2 OP3 O N N 112 AF2 HOP3 H N N 113 C OP3 O N N 114 C P P N N 115 C OP1 O N N 116 C OP2 O N N 117 C "O5'" O N N 118 C "C5'" C N N 119 C "C4'" C N R 120 C "O4'" O N N 121 C "C3'" C N S 122 C "O3'" O N N 123 C "C2'" C N R 124 C "O2'" O N N 125 C "C1'" C N R 126 C N1 N N N 127 C C2 C N N 128 C O2 O N N 129 C N3 N N N 130 C C4 C N N 131 C N4 N N N 132 C C5 C N N 133 C C6 C N N 134 C HOP3 H N N 135 C HOP2 H N N 136 C "H5'" H N N 137 C "H5''" H N N 138 C "H4'" H N N 139 C "H3'" H N N 140 C "HO3'" H N N 141 C "H2'" H N N 142 C "HO2'" H N N 143 C "H1'" H N N 144 C H41 H N N 145 C H42 H N N 146 C H5 H N N 147 C H6 H N N 148 G OP3 O N N 149 G P P N N 150 G OP1 O N N 151 G OP2 O N N 152 G "O5'" O N N 153 G "C5'" C N N 154 G "C4'" C N R 155 G "O4'" O N N 156 G "C3'" C N S 157 G "O3'" O N N 158 G "C2'" C N R 159 G "O2'" O N N 160 G "C1'" C N R 161 G N9 N Y N 162 G C8 C Y N 163 G N7 N Y N 164 G C5 C Y N 165 G C6 C N N 166 G O6 O N N 167 G N1 N N N 168 G C2 C N N 169 G N2 N N N 170 G N3 N N N 171 G C4 C Y N 172 G HOP3 H N N 173 G HOP2 H N N 174 G "H5'" H N N 175 G "H5''" H N N 176 G "H4'" H N N 177 G "H3'" H N N 178 G "HO3'" H N N 179 G "H2'" H N N 180 G "HO2'" H N N 181 G "H1'" H N N 182 G H8 H N N 183 G H1 H N N 184 G H21 H N N 185 G H22 H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 U OP3 O N N 190 U P P N N 191 U OP1 O N N 192 U OP2 O N N 193 U "O5'" O N N 194 U "C5'" C N N 195 U "C4'" C N R 196 U "O4'" O N N 197 U "C3'" C N S 198 U "O3'" O N N 199 U "C2'" C N R 200 U "O2'" O N N 201 U "C1'" C N R 202 U N1 N N N 203 U C2 C N N 204 U O2 O N N 205 U N3 N N N 206 U C4 C N N 207 U O4 O N N 208 U C5 C N N 209 U C6 C N N 210 U HOP3 H N N 211 U HOP2 H N N 212 U "H5'" H N N 213 U "H5''" H N N 214 U "H4'" H N N 215 U "H3'" H N N 216 U "HO3'" H N N 217 U "H2'" H N N 218 U "HO2'" H N N 219 U "H1'" H N N 220 U H3 H N N 221 U H5 H N N 222 U H6 H N N 223 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2SG "O3'" "C3'" sing N N 1 2SG "O2'" "C2'" sing N N 2 2SG "C2'" "C3'" sing N N 3 2SG "C2'" "C1'" sing N N 4 2SG "C3'" "C4'" sing N N 5 2SG "C4'" "C5'" sing N N 6 2SG "C4'" "O4'" sing N N 7 2SG "C5'" "O5'" sing N N 8 2SG "C1'" "O4'" sing N N 9 2SG "C1'" N9 sing N N 10 2SG N2 C2 sing N N 11 2SG N3 C2 doub N N 12 2SG N3 C4 sing N N 13 2SG "O5'" P sing N N 14 2SG N9 C4 sing Y N 15 2SG N9 C8 sing Y N 16 2SG C2 N1 sing N N 17 2SG C4 C5 doub Y N 18 2SG SP1 P sing N N 19 2SG C8 N7 doub Y N 20 2SG P SP2 sing N N 21 2SG N1 C6 sing N N 22 2SG C5 N7 sing Y N 23 2SG C5 C6 sing N N 24 2SG C6 O6 doub N N 25 2SG SP1 H1 sing N N 26 2SG SP2 H2 sing N N 27 2SG "C5'" H3 sing N N 28 2SG "C5'" H4 sing N N 29 2SG "C4'" H5 sing N N 30 2SG "C3'" H6 sing N N 31 2SG "O3'" H7 sing N N 32 2SG "C2'" H8 sing N N 33 2SG "O2'" H9 sing N N 34 2SG "C1'" H10 sing N N 35 2SG C8 H11 sing N N 36 2SG N2 H13 sing N N 37 2SG N2 H14 sing N N 38 2SG P OP3 sing N N 39 2SG P H15 sing N N 40 2SG N1 H12 sing N N 41 2SG OP3 H16 sing N N 42 A OP3 P sing N N 43 A OP3 HOP3 sing N N 44 A P OP1 doub N N 45 A P OP2 sing N N 46 A P "O5'" sing N N 47 A OP2 HOP2 sing N N 48 A "O5'" "C5'" sing N N 49 A "C5'" "C4'" sing N N 50 A "C5'" "H5'" sing N N 51 A "C5'" "H5''" sing N N 52 A "C4'" "O4'" sing N N 53 A "C4'" "C3'" sing N N 54 A "C4'" "H4'" sing N N 55 A "O4'" "C1'" sing N N 56 A "C3'" "O3'" sing N N 57 A "C3'" "C2'" sing N N 58 A "C3'" "H3'" sing N N 59 A "O3'" "HO3'" sing N N 60 A "C2'" "O2'" sing N N 61 A "C2'" "C1'" sing N N 62 A "C2'" "H2'" sing N N 63 A "O2'" "HO2'" sing N N 64 A "C1'" N9 sing N N 65 A "C1'" "H1'" sing N N 66 A N9 C8 sing Y N 67 A N9 C4 sing Y N 68 A C8 N7 doub Y N 69 A C8 H8 sing N N 70 A N7 C5 sing Y N 71 A C5 C6 sing Y N 72 A C5 C4 doub Y N 73 A C6 N6 sing N N 74 A C6 N1 doub Y N 75 A N6 H61 sing N N 76 A N6 H62 sing N N 77 A N1 C2 sing Y N 78 A C2 N3 doub Y N 79 A C2 H2 sing N N 80 A N3 C4 sing Y N 81 AF2 F "C2'" sing N N 82 AF2 P OP1 doub N N 83 AF2 P OP2 sing N N 84 AF2 N1 C6 sing Y N 85 AF2 C2 N1 doub Y N 86 AF2 C2 N3 sing Y N 87 AF2 N3 C4 doub Y N 88 AF2 C4 N9 sing Y N 89 AF2 C4 C5 sing Y N 90 AF2 C5 N7 sing Y N 91 AF2 C6 C5 doub Y N 92 AF2 C6 N6 sing N N 93 AF2 N6 HN6A sing N N 94 AF2 C8 N7 doub Y N 95 AF2 C8 H8 sing N N 96 AF2 N9 C8 sing Y N 97 AF2 "C1'" N9 sing N N 98 AF2 "C1'" "C2'" sing N N 99 AF2 OP2 HOP2 sing N N 100 AF2 "C2'" "H2'" sing N N 101 AF2 "C2'" "C3'" sing N N 102 AF2 "C3'" "H3'" sing N N 103 AF2 "C3'" "O3'" sing N N 104 AF2 "O3'" "HO3'" sing N N 105 AF2 "C4'" "C3'" sing N N 106 AF2 "C4'" "C5'" sing N N 107 AF2 "O4'" "C1'" sing N N 108 AF2 "O4'" "C4'" sing N N 109 AF2 "C5'" "O5'" sing N N 110 AF2 "C5'" "H5'A" sing N N 111 AF2 "O5'" P sing N N 112 AF2 H2 C2 sing N N 113 AF2 "H5'" "C5'" sing N N 114 AF2 "H1'" "C1'" sing N N 115 AF2 "H4'" "C4'" sing N N 116 AF2 HN6 N6 sing N N 117 AF2 P OP3 sing N N 118 AF2 OP3 HOP3 sing N N 119 C OP3 P sing N N 120 C OP3 HOP3 sing N N 121 C P OP1 doub N N 122 C P OP2 sing N N 123 C P "O5'" sing N N 124 C OP2 HOP2 sing N N 125 C "O5'" "C5'" sing N N 126 C "C5'" "C4'" sing N N 127 C "C5'" "H5'" sing N N 128 C "C5'" "H5''" sing N N 129 C "C4'" "O4'" sing N N 130 C "C4'" "C3'" sing N N 131 C "C4'" "H4'" sing N N 132 C "O4'" "C1'" sing N N 133 C "C3'" "O3'" sing N N 134 C "C3'" "C2'" sing N N 135 C "C3'" "H3'" sing N N 136 C "O3'" "HO3'" sing N N 137 C "C2'" "O2'" sing N N 138 C "C2'" "C1'" sing N N 139 C "C2'" "H2'" sing N N 140 C "O2'" "HO2'" sing N N 141 C "C1'" N1 sing N N 142 C "C1'" "H1'" sing N N 143 C N1 C2 sing N N 144 C N1 C6 sing N N 145 C C2 O2 doub N N 146 C C2 N3 sing N N 147 C N3 C4 doub N N 148 C C4 N4 sing N N 149 C C4 C5 sing N N 150 C N4 H41 sing N N 151 C N4 H42 sing N N 152 C C5 C6 doub N N 153 C C5 H5 sing N N 154 C C6 H6 sing N N 155 G OP3 P sing N N 156 G OP3 HOP3 sing N N 157 G P OP1 doub N N 158 G P OP2 sing N N 159 G P "O5'" sing N N 160 G OP2 HOP2 sing N N 161 G "O5'" "C5'" sing N N 162 G "C5'" "C4'" sing N N 163 G "C5'" "H5'" sing N N 164 G "C5'" "H5''" sing N N 165 G "C4'" "O4'" sing N N 166 G "C4'" "C3'" sing N N 167 G "C4'" "H4'" sing N N 168 G "O4'" "C1'" sing N N 169 G "C3'" "O3'" sing N N 170 G "C3'" "C2'" sing N N 171 G "C3'" "H3'" sing N N 172 G "O3'" "HO3'" sing N N 173 G "C2'" "O2'" sing N N 174 G "C2'" "C1'" sing N N 175 G "C2'" "H2'" sing N N 176 G "O2'" "HO2'" sing N N 177 G "C1'" N9 sing N N 178 G "C1'" "H1'" sing N N 179 G N9 C8 sing Y N 180 G N9 C4 sing Y N 181 G C8 N7 doub Y N 182 G C8 H8 sing N N 183 G N7 C5 sing Y N 184 G C5 C6 sing N N 185 G C5 C4 doub Y N 186 G C6 O6 doub N N 187 G C6 N1 sing N N 188 G N1 C2 sing N N 189 G N1 H1 sing N N 190 G C2 N2 sing N N 191 G C2 N3 doub N N 192 G N2 H21 sing N N 193 G N2 H22 sing N N 194 G N3 C4 sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 U OP3 P sing N N 198 U OP3 HOP3 sing N N 199 U P OP1 doub N N 200 U P OP2 sing N N 201 U P "O5'" sing N N 202 U OP2 HOP2 sing N N 203 U "O5'" "C5'" sing N N 204 U "C5'" "C4'" sing N N 205 U "C5'" "H5'" sing N N 206 U "C5'" "H5''" sing N N 207 U "C4'" "O4'" sing N N 208 U "C4'" "C3'" sing N N 209 U "C4'" "H4'" sing N N 210 U "O4'" "C1'" sing N N 211 U "C3'" "O3'" sing N N 212 U "C3'" "C2'" sing N N 213 U "C3'" "H3'" sing N N 214 U "O3'" "HO3'" sing N N 215 U "C2'" "O2'" sing N N 216 U "C2'" "C1'" sing N N 217 U "C2'" "H2'" sing N N 218 U "O2'" "HO2'" sing N N 219 U "C1'" N1 sing N N 220 U "C1'" "H1'" sing N N 221 U N1 C2 sing N N 222 U N1 C6 sing N N 223 U C2 O2 doub N N 224 U C2 N3 sing N N 225 U N3 C4 sing N N 226 U N3 H3 sing N N 227 U C4 O4 doub N N 228 U C4 C5 sing N N 229 U C5 C6 doub N N 230 U C5 H5 sing N N 231 U C6 H6 sing N N 232 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5DO5 'double helix' 5DO5 'a-form double helix' 5DO5 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 12 2_556 0.168 -0.091 -0.013 7.385 -14.757 -0.558 1 A_C101:G112_A A 101 ? A 112 ? 19 1 1 A G 2 1_555 A C 11 2_556 -0.321 -0.162 0.021 -4.208 -16.773 1.711 2 A_G102:C111_A A 102 ? A 111 ? 19 1 1 A C 3 1_555 A 2SG 10 2_556 0.152 -0.110 0.304 -3.101 -14.790 -1.310 3 A_C103:2SG110_A A 103 ? A 110 ? 19 1 1 A G 4 1_555 A AF2 9 2_556 0.043 1.456 -0.578 2.067 -4.394 -17.361 4 A_G104:AF2109_A A 104 ? A 109 ? 8 1 1 A A 5 1_555 A U 8 2_556 0.269 -0.143 -0.027 2.112 -13.994 -6.011 5 A_A105:U108_A A 105 ? A 108 ? 20 1 1 A A 6 1_555 A U 7 2_556 -0.760 -0.284 0.337 6.071 -28.680 20.202 6 A_A106:U107_A A 106 ? A 107 ? 20 1 1 A U 7 1_555 A A 6 2_556 0.760 -0.284 0.337 -6.071 -28.680 20.202 7 A_U107:A106_A A 107 ? A 106 ? 20 1 1 A U 8 1_555 A A 5 2_556 -0.269 -0.143 -0.027 -2.112 -13.994 -6.011 8 A_U108:A105_A A 108 ? A 105 ? 20 1 1 A AF2 9 1_555 A G 4 2_556 -0.043 1.456 -0.578 -2.067 -4.394 -17.361 9 A_AF2109:G104_A A 109 ? A 104 ? 8 1 1 A 2SG 10 1_555 A C 3 2_556 -0.152 -0.110 0.304 3.101 -14.790 -1.310 10 A_2SG110:C103_A A 110 ? A 103 ? 19 1 1 A C 11 1_555 A G 2 2_556 0.321 -0.162 0.021 4.208 -16.773 1.711 11 A_C111:G102_A A 111 ? A 102 ? 19 1 1 A G 12 1_555 A C 1 2_556 -0.168 -0.091 -0.013 -7.385 -14.757 -0.558 12 A_G112:C101_A A 112 ? A 101 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 12 2_556 A G 2 1_555 A C 11 2_556 -0.376 -1.708 3.326 -3.440 13.205 31.851 -4.760 0.142 2.472 22.799 5.940 34.582 1 AA_C101G102:C111G112_AA A 101 ? A 112 ? A 102 ? A 111 ? 1 A G 2 1_555 A C 11 2_556 A C 3 1_555 A 2SG 10 2_556 -0.392 -1.387 3.212 -2.168 4.161 35.916 -2.793 0.338 3.055 6.713 3.497 36.211 2 AA_G102C103:2SG110C111_AA A 102 ? A 111 ? A 103 ? A 110 ? 1 A C 3 1_555 A 2SG 10 2_556 A G 4 1_555 A AF2 9 2_556 -1.041 -1.282 3.245 4.639 8.158 25.284 -4.642 3.308 2.490 17.871 -10.161 26.943 3 AA_C103G104:AF21092SG110_AA A 103 ? A 110 ? A 104 ? A 109 ? 1 A G 4 1_555 A AF2 9 2_556 A A 5 1_555 A U 8 2_556 0.503 -1.626 3.187 -4.677 14.456 30.658 -4.739 -1.495 2.131 25.472 8.242 34.135 4 AA_G104A105:U108AF2109_AA A 104 ? A 109 ? A 105 ? A 108 ? 1 A A 5 1_555 A U 8 2_556 A A 6 1_555 A U 7 2_556 0.953 -1.048 2.937 -0.743 9.026 29.189 -3.512 -1.935 2.485 17.389 1.432 30.533 5 AA_A105A106:U107U108_AA A 105 ? A 108 ? A 106 ? A 107 ? 1 A A 6 1_555 A U 7 2_556 A U 7 1_555 A A 6 2_556 0.000 -0.515 3.543 0.000 7.814 44.674 -1.411 0.000 3.411 10.188 0.000 45.317 6 AA_A106U107:A106U107_AA A 106 ? A 107 ? A 107 ? A 106 ? 1 A U 7 1_555 A A 6 2_556 A U 8 1_555 A A 5 2_556 -0.953 -1.048 2.937 0.743 9.026 29.189 -3.512 1.935 2.485 17.389 -1.432 30.533 7 AA_U107U108:A105A106_AA A 107 ? A 106 ? A 108 ? A 105 ? 1 A U 8 1_555 A A 5 2_556 A AF2 9 1_555 A G 4 2_556 -0.503 -1.626 3.187 4.677 14.456 30.658 -4.739 1.495 2.131 25.472 -8.242 34.135 8 AA_U108AF2109:G104A105_AA A 108 ? A 105 ? A 109 ? A 104 ? 1 A AF2 9 1_555 A G 4 2_556 A 2SG 10 1_555 A C 3 2_556 1.041 -1.282 3.245 -4.639 8.158 25.284 -4.642 -3.308 2.490 17.871 10.161 26.943 9 AA_AF21092SG110:C103G104_AA A 109 ? A 104 ? A 110 ? A 103 ? 1 A 2SG 10 1_555 A C 3 2_556 A C 11 1_555 A G 2 2_556 0.392 -1.387 3.212 2.168 4.162 35.916 -2.793 -0.338 3.055 6.713 -3.497 36.211 10 AA_2SG110C111:G102C103_AA A 110 ? A 103 ? A 111 ? A 102 ? 1 A C 11 1_555 A G 2 2_556 A G 12 1_555 A C 1 2_556 0.376 -1.708 3.326 3.440 13.205 31.851 -4.760 -0.142 2.472 22.799 -5.940 34.582 11 AA_C111G112:C101G102_AA A 111 ? A 102 ? A 112 ? A 101 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM086937 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2Q1R _pdbx_initial_refinement_model.details 'PDB ID:2Q1R' #