data_5DO6 # _entry.id 5DO6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5DO6 WWPDB D_1000213518 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'NMR structure of the wild-type mambalgin-1' 2MJY unspecified PDB 'NMR structure of mambalgin-2. Related to mambalgin 1 (Y4F).' 2MFA unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DO6 _pdbx_database_status.recvd_initial_deposition_date 2015-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stura, E.A.' 1 'Tepshi, L.' 2 'Kessler, P.' 3 'Gilles, M.' 4 'Servent, D.' 5 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Biol.Chem. JBCHA3 0071 1083-351X ? ? 291 ? 2616 2629 ;Mambalgin-1 Pain-relieving Peptide, Stepwise Solid-phase Synthesis, Crystal Structure, and Functional Domain for Acid-sensing Ion Channel 1a Inhibition. ; 2016 ? 10.1074/jbc.M115.702373 26680001 ? ? ? ? ? ? ? ? US ? ? 1 'J Synchrotron Radiat' JSYRES ? 1600-5775 ? ? 24 ? 42 52 'Comparison of helical scan and standard rotation methods in single-crystal X-ray data collection strategies.' 2017 ? 10.1107/S1600577516018488 28009545 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mourier, G.' 1 primary 'Salinas, M.' 2 primary 'Kessler, P.' 3 primary 'Stura, E.A.' 4 primary 'Leblanc, M.' 5 primary 'Tepshi, L.' 6 primary 'Besson, T.' 7 primary 'Diochot, S.' 8 primary 'Baron, A.' 9 primary 'Douguet, D.' 10 primary 'Lingueglia, E.' 11 primary 'Servent, D.' 12 1 'Polsinelli, I.' 13 1 'Savko, M.' 14 1 'Rouanet-Mehouas, C.' 15 1 'Ciccone, L.' 16 1 'Nencetti, S.' 17 1 'Orlandini, E.' 18 1 'Stura, E.A.' 19 1 'Shepard, W.' 20 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5DO6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 55.900 _cell.length_a_esd ? _cell.length_b 100.990 _cell.length_b_esd ? _cell.length_c 53.480 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Mambalgin-1 6544.618 2 ? T23A 'UNP residues 22-78' 'Mambalgin-1 T23A mutant' 2 non-polymer syn 'IODIDE ION' 126.904 5 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 non-polymer syn S-1,2-PROPANEDIOL 76.094 1 ? ? ? ? 5 water nat water 18.015 165 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Mamb-1,Pi-Dp1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LKCYQHGKVVTCHRDMKFCYHNAGMPFRNLKLILQGCSSSCSETENNKCCSTDRCNK _entity_poly.pdbx_seq_one_letter_code_can LKCYQHGKVVTCHRDMKFCYHNAGMPFRNLKLILQGCSSSCSETENNKCCSTDRCNK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 LYS n 1 3 CYS n 1 4 TYR n 1 5 GLN n 1 6 HIS n 1 7 GLY n 1 8 LYS n 1 9 VAL n 1 10 VAL n 1 11 THR n 1 12 CYS n 1 13 HIS n 1 14 ARG n 1 15 ASP n 1 16 MET n 1 17 LYS n 1 18 PHE n 1 19 CYS n 1 20 TYR n 1 21 HIS n 1 22 ASN n 1 23 ALA n 1 24 GLY n 1 25 MET n 1 26 PRO n 1 27 PHE n 1 28 ARG n 1 29 ASN n 1 30 LEU n 1 31 LYS n 1 32 LEU n 1 33 ILE n 1 34 LEU n 1 35 GLN n 1 36 GLY n 1 37 CYS n 1 38 SER n 1 39 SER n 1 40 SER n 1 41 CYS n 1 42 SER n 1 43 GLU n 1 44 THR n 1 45 GLU n 1 46 ASN n 1 47 ASN n 1 48 LYS n 1 49 CYS n 1 50 CYS n 1 51 SER n 1 52 THR n 1 53 ASP n 1 54 ARG n 1 55 CYS n 1 56 ASN n 1 57 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 57 _pdbx_entity_src_syn.organism_scientific 'Dendroaspis polylepis polylepis' _pdbx_entity_src_syn.organism_common_name 'Black mamba' _pdbx_entity_src_syn.ncbi_taxonomy_id 8620 _pdbx_entity_src_syn.details 'T23A mutant' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code 3SX1_DENPO _struct_ref.pdbx_db_accession P0DKR6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LKCYQHGKVVTCHRDMKFCYHNTGMPFRNLKLILQGCSSSCSETENNKCCSTDRCNK _struct_ref.pdbx_align_begin 22 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5DO6 A 1 ? 57 ? P0DKR6 22 ? 78 ? 1 57 2 1 5DO6 B 1 ? 57 ? P0DKR6 22 ? 78 ? 1 57 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5DO6 ALA A 23 ? UNP P0DKR6 THR 44 'engineered mutation' 23 1 2 5DO6 ALA B 23 ? UNP P0DKR6 THR 44 'engineered mutation' 23 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PGO non-polymer . S-1,2-PROPANEDIOL ? 'C3 H8 O2' 76.094 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DO6 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.34 _exptl_crystal.description 'Prismatic crystals' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details 'cooled incubator' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Protein: redissolved from lyophilized at 5mg/ml mamb-1-T23A in 50mM Na Acetate, pH 5.5. Precipitant: 21.6% PEG600, 3.6% PEG 20K 0.18M mixed L-malic acid, MES, Tris (pH4) and mixed sodium Malonate, imidazole, boric acid(pH10) in the ratio 40:60. Cryoprotectant: 30% MPEG 550, 40% CryoProtX cryomix9, 10% NaAc pH 6.5, 0.1M potassium iodide soaked for 1 min. ; _exptl_crystal_grow.pdbx_pH_range '5.5 - 7.6' # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'N2 cryostat - Helical scan' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'X-ray centering - Helical scan' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-06-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator '[111] Si Cut monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9801 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9801 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 2' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DO6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.697 _reflns.d_resolution_low 37 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 16719 _reflns.number_obs 31543 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 97.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.1 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.83 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.697 _reflns_shell.d_res_low 1.74 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.64 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 78.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.408 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DO6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.697 _refine.ls_d_res_low 27.950 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16719 _refine.ls_number_reflns_R_free 837 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.69 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1731 _refine.ls_R_factor_R_free 0.2048 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1715 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.25 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.16 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 898 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 1077 _refine_hist.d_res_high 1.697 _refine_hist.d_res_low 27.950 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1033 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.017 ? 1382 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.350 ? 406 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.043 ? 142 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 187 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6974 1.8038 . . 122 2302 87.00 . . . 0.2524 . 0.2042 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8038 1.9430 . . 139 2650 100.00 . . . 0.2376 . 0.1829 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9430 2.1385 . . 142 2700 100.00 . . . 0.2185 . 0.1611 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1385 2.4478 . . 141 2683 100.00 . . . 0.1961 . 0.1651 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4478 3.0833 . . 144 2725 100.00 . . . 0.2270 . 0.1741 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0833 27.9538 . . 149 2822 100.00 . . . 0.1788 . 0.1686 . . . . . . . . . . # _struct.entry_id 5DO6 _struct.title 'Crystal structure of Dendroaspis polylepis venom mambalgin-1 T23A mutant' _struct.pdbx_descriptor Mambalgin-1 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DO6 _struct_keywords.text 'toxin, Acid Sensing Ion Channels, Pain suppression Drug, Elapid Venom polypeptide' _struct_keywords.pdbx_keywords TOXIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 2 ? I N N 4 ? J N N 5 ? K N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 42 ? ASN A 47 ? SER A 42 ASN A 47 5 ? 6 HELX_P HELX_P2 AA2 SER B 42 ? ASN B 46 ? SER B 42 ASN B 46 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 3 A CYS 19 1_555 ? ? ? ? ? ? ? 2.017 ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 37 SG ? ? A CYS 12 A CYS 37 1_555 ? ? ? ? ? ? ? 2.044 ? disulf3 disulf ? ? A CYS 41 SG ? ? ? 1_555 A CYS 49 SG ? ? A CYS 41 A CYS 49 1_555 ? ? ? ? ? ? ? 2.038 ? disulf4 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 50 A CYS 55 1_555 ? ? ? ? ? ? ? 2.015 ? disulf5 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 19 SG ? ? B CYS 3 B CYS 19 1_555 ? ? ? ? ? ? ? 2.025 ? disulf6 disulf ? ? B CYS 12 SG ? ? ? 1_555 B CYS 37 SG ? ? B CYS 12 B CYS 37 1_555 ? ? ? ? ? ? ? 2.049 ? disulf7 disulf ? ? B CYS 41 SG ? ? ? 1_555 B CYS 49 SG ? ? B CYS 41 B CYS 49 1_555 ? ? ? ? ? ? ? 2.028 ? disulf8 disulf ? ? B CYS 50 SG ? ? ? 1_555 B CYS 55 SG ? ? B CYS 50 B CYS 55 1_555 ? ? ? ? ? ? ? 2.028 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 6 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 2 ? GLN A 5 ? LYS A 2 GLN A 5 AA1 2 LYS A 8 ? THR A 11 ? LYS A 8 THR A 11 AA2 1 CYS A 49 ? CYS A 50 ? CYS A 49 CYS A 50 AA2 2 PHE A 18 ? PHE A 27 ? PHE A 18 PHE A 27 AA2 3 LEU A 30 ? SER A 38 ? LEU A 30 SER A 38 AA2 4 LEU B 30 ? SER B 38 ? LEU B 30 SER B 38 AA2 5 PHE B 18 ? PHE B 27 ? PHE B 18 PHE B 27 AA2 6 CYS B 49 ? CYS B 50 ? CYS B 49 CYS B 50 AA3 1 LYS B 2 ? GLN B 5 ? LYS B 2 GLN B 5 AA3 2 LYS B 8 ? THR B 11 ? LYS B 8 THR B 11 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 3 ? N CYS A 3 O VAL A 10 ? O VAL A 10 AA2 1 2 O CYS A 50 ? O CYS A 50 N CYS A 19 ? N CYS A 19 AA2 2 3 N GLY A 24 ? N GLY A 24 O LEU A 32 ? O LEU A 32 AA2 3 4 N ILE A 33 ? N ILE A 33 O LYS B 31 ? O LYS B 31 AA2 4 5 O LEU B 32 ? O LEU B 32 N GLY B 24 ? N GLY B 24 AA2 5 6 N CYS B 19 ? N CYS B 19 O CYS B 50 ? O CYS B 50 AA3 1 2 N CYS B 3 ? N CYS B 3 O VAL B 10 ? O VAL B 10 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 101 ? 2 'binding site for residue IOD A 101' AC2 Software A IOD 103 ? 1 'binding site for residue IOD A 103' AC3 Software A IOD 104 ? 2 'binding site for residue IOD A 104' AC4 Software A EDO 105 ? 4 'binding site for residue EDO A 105' AC5 Software B IOD 101 ? 1 'binding site for residue IOD B 101' AC6 Software B PGO 102 ? 5 'binding site for residue PGO B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 LEU A 1 ? LEU A 1 . ? 1_555 ? 2 AC1 2 LEU B 1 ? LEU B 1 . ? 7_555 ? 3 AC2 1 SER A 39 ? SER A 39 . ? 3_655 ? 4 AC3 2 THR A 44 ? THR A 44 . ? 1_555 ? 5 AC3 2 HOH K . ? HOH B 254 . ? 2_664 ? 6 AC4 4 HIS A 6 ? HIS A 6 . ? 1_555 ? 7 AC4 4 GLY A 7 ? GLY A 7 . ? 1_555 ? 8 AC4 4 GLN A 35 ? GLN A 35 . ? 1_555 ? 9 AC4 4 LYS A 57 ? LYS A 57 . ? 1_555 ? 10 AC5 1 MET B 25 ? MET B 25 . ? 1_555 ? 11 AC6 5 ARG B 14 ? ARG B 14 . ? 1_555 ? 12 AC6 5 ASP B 15 ? ASP B 15 . ? 1_555 ? 13 AC6 5 LYS B 17 ? LYS B 17 . ? 1_555 ? 14 AC6 5 HOH K . ? HOH B 239 . ? 3_655 ? 15 AC6 5 HOH K . ? HOH B 239 . ? 1_555 ? # _atom_sites.entry_id 5DO6 _atom_sites.fract_transf_matrix[1][1] 0.017889 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009902 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018699 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 HIS 21 21 21 HIS HIS A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 LYS 57 57 57 LYS LYS A . n B 1 1 LEU 1 1 1 LEU LEU B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 CYS 3 3 3 CYS CYS B . n B 1 4 TYR 4 4 4 TYR TYR B . n B 1 5 GLN 5 5 5 GLN GLN B . n B 1 6 HIS 6 6 6 HIS HIS B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 CYS 12 12 12 CYS CYS B . n B 1 13 HIS 13 13 13 HIS HIS B . n B 1 14 ARG 14 14 14 ARG ARG B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 MET 16 16 16 MET MET B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 PHE 18 18 18 PHE PHE B . n B 1 19 CYS 19 19 19 CYS CYS B . n B 1 20 TYR 20 20 20 TYR TYR B . n B 1 21 HIS 21 21 21 HIS HIS B . n B 1 22 ASN 22 22 22 ASN ASN B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 MET 25 25 25 MET MET B . n B 1 26 PRO 26 26 26 PRO PRO B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 ASN 29 29 29 ASN ASN B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 GLN 35 35 35 GLN GLN B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 CYS 37 37 37 CYS CYS B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 SER 39 39 39 SER SER B . n B 1 40 SER 40 40 40 SER SER B . n B 1 41 CYS 41 41 41 CYS CYS B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 THR 44 44 44 THR THR B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 ASN 46 46 46 ASN ASN B . n B 1 47 ASN 47 47 47 ASN ASN B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 CYS 49 49 49 CYS CYS B . n B 1 50 CYS 50 50 50 CYS CYS B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 THR 52 52 52 THR THR B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 ARG 54 54 54 ARG ARG B . n B 1 55 CYS 55 55 55 CYS CYS B . n B 1 56 ASN 56 56 56 ASN ASN B . n B 1 57 LYS 57 57 57 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD 1 101 1 IOD IOD A . D 2 IOD 1 102 2 IOD IOD A . E 2 IOD 1 103 3 IOD IOD A . F 2 IOD 1 104 4 IOD IOD A . G 3 EDO 1 105 4 EDO EDO A . H 2 IOD 1 101 5 IOD IOD B . I 4 PGO 1 102 1 PGO PGO B . J 5 HOH 1 201 13 HOH HOH A . J 5 HOH 2 202 158 HOH HOH A . J 5 HOH 3 203 92 HOH HOH A . J 5 HOH 4 204 141 HOH HOH A . J 5 HOH 5 205 21 HOH HOH A . J 5 HOH 6 206 131 HOH HOH A . J 5 HOH 7 207 79 HOH HOH A . J 5 HOH 8 208 97 HOH HOH A . J 5 HOH 9 209 43 HOH HOH A . J 5 HOH 10 210 121 HOH HOH A . J 5 HOH 11 211 68 HOH HOH A . J 5 HOH 12 212 7 HOH HOH A . J 5 HOH 13 213 37 HOH HOH A . J 5 HOH 14 214 20 HOH HOH A . J 5 HOH 15 215 74 HOH HOH A . J 5 HOH 16 216 35 HOH HOH A . J 5 HOH 17 217 45 HOH HOH A . J 5 HOH 18 218 11 HOH HOH A . J 5 HOH 19 219 28 HOH HOH A . J 5 HOH 20 220 42 HOH HOH A . J 5 HOH 21 221 122 HOH HOH A . J 5 HOH 22 222 1 HOH HOH A . J 5 HOH 23 223 17 HOH HOH A . J 5 HOH 24 224 135 HOH HOH A . J 5 HOH 25 225 6 HOH HOH A . J 5 HOH 26 226 12 HOH HOH A . J 5 HOH 27 227 46 HOH HOH A . J 5 HOH 28 228 8 HOH HOH A . J 5 HOH 29 229 94 HOH HOH A . J 5 HOH 30 230 29 HOH HOH A . J 5 HOH 31 231 59 HOH HOH A . J 5 HOH 32 232 54 HOH HOH A . J 5 HOH 33 233 10 HOH HOH A . J 5 HOH 34 234 3 HOH HOH A . J 5 HOH 35 235 83 HOH HOH A . J 5 HOH 36 236 109 HOH HOH A . J 5 HOH 37 237 2 HOH HOH A . J 5 HOH 38 238 16 HOH HOH A . J 5 HOH 39 239 110 HOH HOH A . J 5 HOH 40 240 25 HOH HOH A . J 5 HOH 41 241 86 HOH HOH A . J 5 HOH 42 242 36 HOH HOH A . J 5 HOH 43 243 24 HOH HOH A . J 5 HOH 44 244 26 HOH HOH A . J 5 HOH 45 245 102 HOH HOH A . J 5 HOH 46 246 14 HOH HOH A . J 5 HOH 47 247 82 HOH HOH A . J 5 HOH 48 248 23 HOH HOH A . J 5 HOH 49 249 38 HOH HOH A . J 5 HOH 50 250 123 HOH HOH A . J 5 HOH 51 251 111 HOH HOH A . J 5 HOH 52 252 76 HOH HOH A . J 5 HOH 53 253 87 HOH HOH A . J 5 HOH 54 254 90 HOH HOH A . J 5 HOH 55 255 144 HOH HOH A . J 5 HOH 56 256 19 HOH HOH A . J 5 HOH 57 257 32 HOH HOH A . J 5 HOH 58 258 151 HOH HOH A . J 5 HOH 59 259 137 HOH HOH A . J 5 HOH 60 260 67 HOH HOH A . J 5 HOH 61 261 75 HOH HOH A . J 5 HOH 62 262 63 HOH HOH A . J 5 HOH 63 263 93 HOH HOH A . J 5 HOH 64 264 72 HOH HOH A . J 5 HOH 65 265 165 HOH HOH A . J 5 HOH 66 266 128 HOH HOH A . J 5 HOH 67 267 113 HOH HOH A . J 5 HOH 68 268 99 HOH HOH A . J 5 HOH 69 269 114 HOH HOH A . J 5 HOH 70 270 148 HOH HOH A . J 5 HOH 71 271 117 HOH HOH A . J 5 HOH 72 272 132 HOH HOH A . J 5 HOH 73 273 157 HOH HOH A . J 5 HOH 74 274 52 HOH HOH A . J 5 HOH 75 275 124 HOH HOH A . J 5 HOH 76 276 66 HOH HOH A . J 5 HOH 77 277 60 HOH HOH A . J 5 HOH 78 278 145 HOH HOH A . J 5 HOH 79 279 143 HOH HOH A . J 5 HOH 80 280 34 HOH HOH A . J 5 HOH 81 281 88 HOH HOH A . J 5 HOH 82 282 164 HOH HOH A . J 5 HOH 83 283 127 HOH HOH A . J 5 HOH 84 284 150 HOH HOH A . J 5 HOH 85 285 156 HOH HOH A . J 5 HOH 86 286 149 HOH HOH A . J 5 HOH 87 287 89 HOH HOH A . J 5 HOH 88 288 139 HOH HOH A . J 5 HOH 89 289 101 HOH HOH A . J 5 HOH 90 290 125 HOH HOH A . J 5 HOH 91 291 103 HOH HOH A . J 5 HOH 92 292 134 HOH HOH A . J 5 HOH 93 293 100 HOH HOH A . J 5 HOH 94 294 112 HOH HOH A . J 5 HOH 95 295 130 HOH HOH A . K 5 HOH 1 201 57 HOH HOH B . K 5 HOH 2 202 51 HOH HOH B . K 5 HOH 3 203 58 HOH HOH B . K 5 HOH 4 204 80 HOH HOH B . K 5 HOH 5 205 147 HOH HOH B . K 5 HOH 6 206 55 HOH HOH B . K 5 HOH 7 207 64 HOH HOH B . K 5 HOH 8 208 95 HOH HOH B . K 5 HOH 9 209 71 HOH HOH B . K 5 HOH 10 210 77 HOH HOH B . K 5 HOH 11 211 162 HOH HOH B . K 5 HOH 12 212 27 HOH HOH B . K 5 HOH 13 213 33 HOH HOH B . K 5 HOH 14 214 30 HOH HOH B . K 5 HOH 15 215 15 HOH HOH B . K 5 HOH 16 216 9 HOH HOH B . K 5 HOH 17 217 18 HOH HOH B . K 5 HOH 18 218 104 HOH HOH B . K 5 HOH 19 219 119 HOH HOH B . K 5 HOH 20 220 140 HOH HOH B . K 5 HOH 21 221 39 HOH HOH B . K 5 HOH 22 222 138 HOH HOH B . K 5 HOH 23 223 61 HOH HOH B . K 5 HOH 24 224 85 HOH HOH B . K 5 HOH 25 225 48 HOH HOH B . K 5 HOH 26 226 4 HOH HOH B . K 5 HOH 27 227 70 HOH HOH B . K 5 HOH 28 228 5 HOH HOH B . K 5 HOH 29 229 81 HOH HOH B . K 5 HOH 30 230 44 HOH HOH B . K 5 HOH 31 231 96 HOH HOH B . K 5 HOH 32 232 31 HOH HOH B . K 5 HOH 33 233 53 HOH HOH B . K 5 HOH 34 234 56 HOH HOH B . K 5 HOH 35 235 78 HOH HOH B . K 5 HOH 36 236 133 HOH HOH B . K 5 HOH 37 237 146 HOH HOH B . K 5 HOH 38 238 49 HOH HOH B . K 5 HOH 39 239 65 HOH HOH B . K 5 HOH 40 240 47 HOH HOH B . K 5 HOH 41 241 41 HOH HOH B . K 5 HOH 42 242 40 HOH HOH B . K 5 HOH 43 243 22 HOH HOH B . K 5 HOH 44 244 129 HOH HOH B . K 5 HOH 45 245 50 HOH HOH B . K 5 HOH 46 246 153 HOH HOH B . K 5 HOH 47 247 73 HOH HOH B . K 5 HOH 48 248 161 HOH HOH B . K 5 HOH 49 249 154 HOH HOH B . K 5 HOH 50 250 116 HOH HOH B . K 5 HOH 51 251 98 HOH HOH B . K 5 HOH 52 252 106 HOH HOH B . K 5 HOH 53 253 105 HOH HOH B . K 5 HOH 54 254 91 HOH HOH B . K 5 HOH 55 255 115 HOH HOH B . K 5 HOH 56 256 136 HOH HOH B . K 5 HOH 57 257 62 HOH HOH B . K 5 HOH 58 258 159 HOH HOH B . K 5 HOH 59 259 108 HOH HOH B . K 5 HOH 60 260 163 HOH HOH B . K 5 HOH 61 261 118 HOH HOH B . K 5 HOH 62 262 69 HOH HOH B . K 5 HOH 63 263 160 HOH HOH B . K 5 HOH 64 264 120 HOH HOH B . K 5 HOH 65 265 155 HOH HOH B . K 5 HOH 66 266 84 HOH HOH B . K 5 HOH 67 267 107 HOH HOH B . K 5 HOH 68 268 152 HOH HOH B . K 5 HOH 69 269 126 HOH HOH B . K 5 HOH 70 270 142 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6410 ? 1 MORE -27 ? 1 'SSA (A^2)' 12520 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 55.9000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.7400000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 266 ? J HOH . 2 1 B HOH 239 ? K HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-30 2 'Structure model' 1 1 2016-02-17 3 'Structure model' 1 2 2017-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? AutoSol 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 44 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 56 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -96.69 _pdbx_validate_torsion.psi 33.38 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 1,2-ETHANEDIOL EDO 4 S-1,2-PROPANEDIOL PGO 5 water HOH #