HEADER DNA BINDING PROTEIN 11-SEP-15 5DOC TITLE CRYSTAL STRUCTURE OF THE HUMAN CYTOMEGALOVIRUS UL53 SUBUNIT OF THE NEC COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRION EGRESS PROTEIN UL31 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UL53 RESIDUES 88-290; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CYTOMEGALOVIRUS (STRAIN AD169); SOURCE 3 ORGANISM_COMMON: HHV-5; SOURCE 4 ORGANISM_TAXID: 10360; SOURCE 5 STRAIN: AD169; SOURCE 6 GENE: UL53; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC FINGER, BERGERAT FOLD, CONSERVED REGIONS, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.LYE,K.EL OMARI,D.J.FILMAN,J.M.HOGLE REVDAT 5 06-MAR-24 5DOC 1 REMARK REVDAT 4 11-DEC-19 5DOC 1 REMARK REVDAT 3 20-SEP-17 5DOC 1 JRNL REMARK REVDAT 2 16-DEC-15 5DOC 1 JRNL REVDAT 1 25-NOV-15 5DOC 0 JRNL AUTH M.F.LYE,M.SHARMA,K.EL OMARI,D.J.FILMAN,J.P.SCHUERMANN, JRNL AUTH 2 J.M.HOGLE,D.M.COEN JRNL TITL UNEXPECTED FEATURES AND MECHANISM OF HETERODIMER FORMATION JRNL TITL 2 OF A HERPESVIRUS NUCLEAR EGRESS COMPLEX. JRNL REF EMBO J. V. 34 2937 2015 JRNL REFN ESSN 1460-2075 JRNL PMID 26511021 JRNL DOI 10.15252/EMBJ.201592651 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 23961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2666 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : -0.38000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : -0.21000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3262 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3057 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4424 ; 1.437 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7041 ; 1.421 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 5.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;41.561 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;14.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3683 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1593 ; 1.225 ; 1.376 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1592 ; 1.217 ; 1.375 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1986 ; 1.951 ; 2.053 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1987 ; 1.951 ; 2.054 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1669 ; 1.907 ; 1.685 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1669 ; 1.905 ; 1.685 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2439 ; 3.010 ; 2.418 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3578 ; 5.326 ;11.525 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3579 ; 5.326 ;11.534 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 17 217 B 17 217 11159 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4693 34.6497 -9.1565 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.0321 REMARK 3 T33: 0.0928 T12: -0.0032 REMARK 3 T13: -0.0062 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.8959 L22: 1.4004 REMARK 3 L33: 1.1656 L12: 0.2654 REMARK 3 L13: 0.3516 L23: -0.0286 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.0604 S13: -0.1022 REMARK 3 S21: -0.0266 S22: 0.0125 S23: -0.0363 REMARK 3 S31: 0.0824 S32: -0.0223 S33: -0.0418 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 218 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6657 54.8667 19.7624 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: 0.0918 REMARK 3 T33: 0.0958 T12: 0.0230 REMARK 3 T13: -0.0037 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 0.9281 L22: 1.6905 REMARK 3 L33: 1.1767 L12: 0.0673 REMARK 3 L13: -0.1626 L23: 0.1152 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.1054 S13: 0.0958 REMARK 3 S21: 0.0668 S22: 0.0178 S23: -0.0164 REMARK 3 S31: -0.0601 S32: -0.0500 S33: -0.0228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26803 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 61.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 10-15 % PEG 3350, AND REMARK 280 0.15 M AMMONIUM ACETATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 54 REMARK 465 ASP A 55 REMARK 465 ASN A 56 REMARK 465 ARG A 57 REMARK 465 ILE A 58 REMARK 465 SER A 218 REMARK 465 GLY B 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET B 77 O HOH B 449 1655 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 154 -55.27 78.95 REMARK 500 GLU B 154 -53.72 77.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 CYS A 50 SG 121.9 REMARK 620 3 CYS A 53 SG 107.2 115.2 REMARK 620 4 HIS A 139 NE2 110.4 93.5 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 34 SG REMARK 620 2 CYS B 50 SG 123.2 REMARK 620 3 CYS B 53 SG 101.3 113.3 REMARK 620 4 HIS B 139 NE2 110.5 91.0 118.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DOB RELATED DB: PDB REMARK 900 RELATED ID: 5DOE RELATED DB: PDB DBREF 5DOC A 16 218 UNP P16794 UL53_HCMVA 88 290 DBREF 5DOC B 16 218 UNP P16794 UL53_HCMVA 88 290 SEQRES 1 A 203 GLY LYS GLU SER ILE CYS LEU PRO PHE ASN PHE HIS SER SEQRES 2 A 203 HIS ARG GLN HIS THR CYS LEU ASP ILE SER PRO TYR GLY SEQRES 3 A 203 ASN GLU GLN VAL SER ARG ILE ALA CYS THR SER CYS GLU SEQRES 4 A 203 ASP ASN ARG ILE LEU PRO THR ALA SER ASP ALA MET VAL SEQRES 5 A 203 ALA PHE ILE ASN GLN THR SER ASN ILE MET LYS ASN ARG SEQRES 6 A 203 ASN PHE TYR TYR GLY PHE CYS LYS SER SER GLU LEU LEU SEQRES 7 A 203 LYS LEU SER THR ASN GLN PRO PRO ILE PHE GLN ILE TYR SEQRES 8 A 203 TYR LEU LEU HIS ALA ALA ASN HIS ASP ILE VAL PRO PHE SEQRES 9 A 203 MET HIS ALA GLU ASP GLY ARG LEU HIS MET HIS VAL ILE SEQRES 10 A 203 PHE GLU ASN PRO ASP VAL HIS ILE PRO CYS ASP CYS ILE SEQRES 11 A 203 THR GLN MET LEU THR ALA ALA ARG GLU ASP TYR SER VAL SEQRES 12 A 203 THR LEU ASN ILE VAL ARG ASP HIS VAL VAL ILE SER VAL SEQRES 13 A 203 LEU CYS HIS ALA VAL SER ALA SER SER VAL LYS ILE ASP SEQRES 14 A 203 VAL THR ILE LEU GLN ARG LYS ILE ASP GLU MET ASP ILE SEQRES 15 A 203 PRO ASN ASP VAL SER GLU SER PHE GLU ARG TYR LYS GLU SEQRES 16 A 203 LEU ILE GLN GLU LEU CYS GLN SER SEQRES 1 B 203 GLY LYS GLU SER ILE CYS LEU PRO PHE ASN PHE HIS SER SEQRES 2 B 203 HIS ARG GLN HIS THR CYS LEU ASP ILE SER PRO TYR GLY SEQRES 3 B 203 ASN GLU GLN VAL SER ARG ILE ALA CYS THR SER CYS GLU SEQRES 4 B 203 ASP ASN ARG ILE LEU PRO THR ALA SER ASP ALA MET VAL SEQRES 5 B 203 ALA PHE ILE ASN GLN THR SER ASN ILE MET LYS ASN ARG SEQRES 6 B 203 ASN PHE TYR TYR GLY PHE CYS LYS SER SER GLU LEU LEU SEQRES 7 B 203 LYS LEU SER THR ASN GLN PRO PRO ILE PHE GLN ILE TYR SEQRES 8 B 203 TYR LEU LEU HIS ALA ALA ASN HIS ASP ILE VAL PRO PHE SEQRES 9 B 203 MET HIS ALA GLU ASP GLY ARG LEU HIS MET HIS VAL ILE SEQRES 10 B 203 PHE GLU ASN PRO ASP VAL HIS ILE PRO CYS ASP CYS ILE SEQRES 11 B 203 THR GLN MET LEU THR ALA ALA ARG GLU ASP TYR SER VAL SEQRES 12 B 203 THR LEU ASN ILE VAL ARG ASP HIS VAL VAL ILE SER VAL SEQRES 13 B 203 LEU CYS HIS ALA VAL SER ALA SER SER VAL LYS ILE ASP SEQRES 14 B 203 VAL THR ILE LEU GLN ARG LYS ILE ASP GLU MET ASP ILE SEQRES 15 B 203 PRO ASN ASP VAL SER GLU SER PHE GLU ARG TYR LYS GLU SEQRES 16 B 203 LEU ILE GLN GLU LEU CYS GLN SER HET ZN A 301 1 HET GOL A 302 6 HET ZN B 300 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *133(H2 O) HELIX 1 AA1 HIS A 27 HIS A 29 5 3 HELIX 2 AA2 THR A 61 ASN A 71 1 11 HELIX 3 AA3 GLN A 72 ASN A 75 5 4 HELIX 4 AA4 ASN A 79 GLY A 85 1 7 HELIX 5 AA5 SER A 89 THR A 97 1 9 HELIX 6 AA6 GLN A 99 ASN A 113 1 15 HELIX 7 AA7 PRO A 141 ARG A 153 1 13 HELIX 8 AA8 ASP A 184 MET A 195 1 12 HELIX 9 AA9 PRO A 198 TYR A 208 1 11 HELIX 10 AB1 TYR A 208 GLN A 217 1 10 HELIX 11 AB2 HIS B 27 HIS B 29 5 3 HELIX 12 AB3 THR B 51 ASN B 56 1 6 HELIX 13 AB4 THR B 61 ASN B 71 1 11 HELIX 14 AB5 GLN B 72 ASN B 75 5 4 HELIX 15 AB6 ASN B 79 GLY B 85 1 7 HELIX 16 AB7 SER B 89 GLN B 99 1 11 HELIX 17 AB8 GLN B 99 ASN B 113 1 15 HELIX 18 AB9 PRO B 141 ARG B 153 1 13 HELIX 19 AC1 ASP B 184 MET B 195 1 12 HELIX 20 AC2 PRO B 198 TYR B 208 1 11 HELIX 21 AC3 TYR B 208 CYS B 216 1 9 SHEET 1 AA1 4 GLU A 18 SER A 19 0 SHEET 2 AA1 4 GLY A 41 SER A 46 -1 O GLN A 44 N GLU A 18 SHEET 3 AA1 4 THR A 33 SER A 38 -1 N ASP A 36 O GLU A 43 SHEET 4 AA1 4 VAL A 138 ILE A 140 -1 O VAL A 138 N ILE A 37 SHEET 1 AA2 5 PHE A 24 ASN A 25 0 SHEET 2 AA2 5 TYR A 156 VAL A 163 -1 O LEU A 160 N PHE A 24 SHEET 3 AA2 5 HIS A 166 CYS A 173 -1 O SER A 170 N THR A 159 SHEET 4 AA2 5 ARG A 126 PHE A 133 -1 N MET A 129 O VAL A 171 SHEET 5 AA2 5 ILE A 116 GLU A 123 -1 N VAL A 117 O ILE A 132 SHEET 1 AA3 4 GLU B 18 SER B 19 0 SHEET 2 AA3 4 GLY B 41 SER B 46 -1 O GLN B 44 N GLU B 18 SHEET 3 AA3 4 THR B 33 SER B 38 -1 N ASP B 36 O GLU B 43 SHEET 4 AA3 4 VAL B 138 ILE B 140 -1 O VAL B 138 N ILE B 37 SHEET 1 AA4 5 PHE B 24 ASN B 25 0 SHEET 2 AA4 5 TYR B 156 VAL B 163 -1 O LEU B 160 N PHE B 24 SHEET 3 AA4 5 HIS B 166 CYS B 173 -1 O HIS B 166 N VAL B 163 SHEET 4 AA4 5 ARG B 126 PHE B 133 -1 N MET B 129 O VAL B 171 SHEET 5 AA4 5 ILE B 116 GLU B 123 -1 N HIS B 121 O HIS B 128 LINK SG CYS A 34 ZN ZN A 301 1555 1555 2.27 LINK SG CYS A 50 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 53 ZN ZN A 301 1555 1555 2.25 LINK NE2 HIS A 139 ZN ZN A 301 1555 1555 2.12 LINK SG CYS B 34 ZN ZN B 300 1555 1555 2.30 LINK SG CYS B 50 ZN ZN B 300 1555 1555 2.23 LINK SG CYS B 53 ZN ZN B 300 1555 1555 2.39 LINK NE2 HIS B 139 ZN ZN B 300 1555 1555 2.13 CISPEP 1 LEU A 22 PRO A 23 0 -4.57 CISPEP 2 LEU B 22 PRO B 23 0 -6.35 SITE 1 AC1 4 CYS A 34 CYS A 50 CYS A 53 HIS A 139 SITE 1 AC2 2 ASN A 71 HOH B 406 SITE 1 AC3 4 CYS B 34 CYS B 50 CYS B 53 HIS B 139 CRYST1 33.800 50.300 63.000 91.00 103.00 108.00 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029586 0.009613 0.007767 0.00000 SCALE2 0.000000 0.020904 0.001970 0.00000 SCALE3 0.000000 0.000000 0.016363 0.00000