data_5DOM # _entry.id 5DOM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5DOM WWPDB D_1000213500 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DOM _pdbx_database_status.recvd_initial_deposition_date 2015-09-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ullah, A.' 1 'Murakami, M.T.' 2 'Arni, R.K.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_id_ASTM BBRCA9 _citation.journal_id_CSD 0146 _citation.journal_id_ISSN 1090-2104 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 468 _citation.language ? _citation.page_first 365 _citation.page_last 371 _citation.title 'Crystal structure of mature 2S albumin from Moringa oleifera seeds.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2015.10.087 _citation.pdbx_database_id_PubMed 26505799 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ullah, A.' 1 ? primary 'Mariutti, R.B.' 2 ? primary 'Masood, R.' 3 ? primary 'Caruso, I.P.' 4 ? primary 'Gravatim Costa, G.H.' 5 ? primary 'Millena de Freita, C.' 6 ? primary 'Santos, C.R.' 7 ? primary 'Zanphorlin, L.M.' 8 ? primary 'Rossini Mutton, M.J.' 9 ? primary 'Murakami, M.T.' 10 ? primary 'Arni, R.K.' 11 ? # _cell.entry_id 5DOM _cell.length_a 106.867 _cell.length_b 106.867 _cell.length_c 43.160 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DOM _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2S albumin' 14291.200 1 ? ? 'UNP residues 37-158' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 50 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'chitin binding protein isoform 3-1 (mMOCBP3-1)' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QQQRCRHQFQTQQRLRACQRVIRRWSQGGGPMEDVEDEIDETDEIEEVVEPDQARRPPTLQRCCRQLRNVSPFCRCPSLR QAVQSAQQQQGQVGPQQVGHMYRVASRIPAICNLQPMRCPFR ; _entity_poly.pdbx_seq_one_letter_code_can ;QQQRCRHQFQTQQRLRACQRVIRRWSQGGGPMEDVEDEIDETDEIEEVVEPDQARRPPTLQRCCRQLRNVSPFCRCPSLR QAVQSAQQQQGQVGPQQVGHMYRVASRIPAICNLQPMRCPFR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 GLN n 1 3 GLN n 1 4 ARG n 1 5 CYS n 1 6 ARG n 1 7 HIS n 1 8 GLN n 1 9 PHE n 1 10 GLN n 1 11 THR n 1 12 GLN n 1 13 GLN n 1 14 ARG n 1 15 LEU n 1 16 ARG n 1 17 ALA n 1 18 CYS n 1 19 GLN n 1 20 ARG n 1 21 VAL n 1 22 ILE n 1 23 ARG n 1 24 ARG n 1 25 TRP n 1 26 SER n 1 27 GLN n 1 28 GLY n 1 29 GLY n 1 30 GLY n 1 31 PRO n 1 32 MET n 1 33 GLU n 1 34 ASP n 1 35 VAL n 1 36 GLU n 1 37 ASP n 1 38 GLU n 1 39 ILE n 1 40 ASP n 1 41 GLU n 1 42 THR n 1 43 ASP n 1 44 GLU n 1 45 ILE n 1 46 GLU n 1 47 GLU n 1 48 VAL n 1 49 VAL n 1 50 GLU n 1 51 PRO n 1 52 ASP n 1 53 GLN n 1 54 ALA n 1 55 ARG n 1 56 ARG n 1 57 PRO n 1 58 PRO n 1 59 THR n 1 60 LEU n 1 61 GLN n 1 62 ARG n 1 63 CYS n 1 64 CYS n 1 65 ARG n 1 66 GLN n 1 67 LEU n 1 68 ARG n 1 69 ASN n 1 70 VAL n 1 71 SER n 1 72 PRO n 1 73 PHE n 1 74 CYS n 1 75 ARG n 1 76 CYS n 1 77 PRO n 1 78 SER n 1 79 LEU n 1 80 ARG n 1 81 GLN n 1 82 ALA n 1 83 VAL n 1 84 GLN n 1 85 SER n 1 86 ALA n 1 87 GLN n 1 88 GLN n 1 89 GLN n 1 90 GLN n 1 91 GLY n 1 92 GLN n 1 93 VAL n 1 94 GLY n 1 95 PRO n 1 96 GLN n 1 97 GLN n 1 98 VAL n 1 99 GLY n 1 100 HIS n 1 101 MET n 1 102 TYR n 1 103 ARG n 1 104 VAL n 1 105 ALA n 1 106 SER n 1 107 ARG n 1 108 ILE n 1 109 PRO n 1 110 ALA n 1 111 ILE n 1 112 CYS n 1 113 ASN n 1 114 LEU n 1 115 GLN n 1 116 PRO n 1 117 MET n 1 118 ARG n 1 119 CYS n 1 120 PRO n 1 121 PHE n 1 122 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 122 _entity_src_gen.gene_src_common_name 'Horseradish tree' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Moringa oleifera' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3735 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Moringa oleifera' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 3735 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code W5S2D2_MOROL _struct_ref.pdbx_db_accession W5S2D2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QQQRCRHQFQTQQRLRACQRVIRRWSQGGGPMEDVEDEIDETDEIEEVVEPDQARRPPTLQRCCRQLRNVSPFCRCPSLR QAVQSAQQQQGQVGPQQVGHMYRVASRIPAICNLQPMRCPFR ; _struct_ref.pdbx_align_begin 37 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DOM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession W5S2D2 _struct_ref_seq.db_align_beg 37 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 158 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 37 _struct_ref_seq.pdbx_auth_seq_align_end 158 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DOM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.3 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Initial: 0.1 M sodium acetate pH 4.6 and 2.0 M NaCl, Optimization: 0.1 M sodium acetate pH 4.3 and 2.4 M NaCl' _exptl_crystal_grow.pdbx_pH_range 4.0-5.6 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-03-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.45 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'LNLS BEAMLINE W01B-MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.45 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline W01B-MX2 _diffrn_source.pdbx_synchrotron_site LNLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DOM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 40.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 13674 _reflns.number_obs 13674 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.96 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.81 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5DOM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11992 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 75.57 _refine.ls_d_res_high 1.69 _refine.ls_percent_reflns_obs 88.57 _refine.ls_R_factor_obs 0.22391 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22192 _refine.ls_R_factor_R_free 0.26288 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 608 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 35.896 _refine.aniso_B[1][1] 0.32 _refine.aniso_B[2][2] 0.32 _refine.aniso_B[3][3] -0.65 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.120 _refine.pdbx_overall_ESU_R_Free 0.122 _refine.overall_SU_ML 0.093 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.902 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 740 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 798 _refine_hist.d_res_high 1.69 _refine_hist.d_res_low 75.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.019 ? 764 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 749 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.018 1.932 ? 1025 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.141 3.000 ? 1695 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.217 5.000 ? 88 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.857 20.930 ? 43 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.720 15.000 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.593 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.156 0.200 ? 103 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.021 ? 878 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 218 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.637 3.119 ? 359 'X-RAY DIFFRACTION' ? r_mcbond_other 3.582 3.111 ? 357 'X-RAY DIFFRACTION' ? r_mcangle_it 4.971 4.633 ? 444 'X-RAY DIFFRACTION' ? r_mcangle_other 4.966 4.640 ? 445 'X-RAY DIFFRACTION' ? r_scbond_it 4.397 3.828 ? 404 'X-RAY DIFFRACTION' ? r_scbond_other 4.392 3.829 ? 405 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 6.694 5.517 ? 582 'X-RAY DIFFRACTION' ? r_long_range_B_refined 8.516 25.676 ? 912 'X-RAY DIFFRACTION' ? r_long_range_B_other 8.512 25.692 ? 913 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.694 _refine_ls_shell.d_res_low 1.738 _refine_ls_shell.number_reflns_R_work 629 _refine_ls_shell.R_factor_R_work 0.324 _refine_ls_shell.percent_reflns_obs 65.79 _refine_ls_shell.R_factor_R_free 0.364 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5DOM _struct.title 'Crystal structure, maturation and flocculating properties of a 2S albumin from Moringa oleifera seeds' _struct.pdbx_descriptor '2S albumin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DOM _struct_keywords.text 'Moringa oleifera seeds, 2S albumin, flocculating activity, PLANT PROTEIN' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 4 ? GLN A 12 ? ARG A 40 GLN A 48 1 ? 9 HELX_P HELX_P2 AA2 LEU A 15 ? TRP A 25 ? LEU A 51 TRP A 61 1 ? 11 HELX_P HELX_P3 AA3 PRO A 58 ? ASN A 69 ? PRO A 94 ASN A 105 1 ? 12 HELX_P HELX_P4 AA4 SER A 71 ? PHE A 73 ? SER A 107 PHE A 109 5 ? 3 HELX_P HELX_P5 AA5 CYS A 74 ? GLN A 90 ? CYS A 110 GLN A 126 1 ? 17 HELX_P HELX_P6 AA6 GLY A 94 ? CYS A 112 ? GLY A 130 CYS A 148 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 74 SG ? ? A CYS 41 A CYS 110 1_555 ? ? ? ? ? ? ? 2.073 ? disulf2 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 54 A CYS 99 1_555 ? ? ? ? ? ? ? 2.013 ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 112 SG ? ? A CYS 100 A CYS 148 1_555 ? ? ? ? ? ? ? 2.028 ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 119 SG ? ? A CYS 112 A CYS 155 1_555 ? ? ? ? ? ? ? 2.028 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 115 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 151 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 116 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 152 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.61 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 6 'binding site for residue EDO A 201' AC2 Software A ACT 202 ? 2 'binding site for residue ACT A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLN A 96 ? GLN A 132 . ? 10_665 ? 2 AC1 6 GLY A 99 ? GLY A 135 . ? 1_555 ? 3 AC1 6 HIS A 100 ? HIS A 136 . ? 10_665 ? 4 AC1 6 HIS A 100 ? HIS A 136 . ? 1_555 ? 5 AC1 6 ARG A 103 ? ARG A 139 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 313 . ? 10_665 ? 7 AC2 2 ARG A 68 ? ARG A 104 . ? 1_555 ? 8 AC2 2 ASN A 69 ? ASN A 105 . ? 1_555 ? # _atom_sites.entry_id 5DOM _atom_sites.fract_transf_matrix[1][1] 0.009357 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009357 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023170 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 37 ? ? ? A . n A 1 2 GLN 2 38 ? ? ? A . n A 1 3 GLN 3 39 ? ? ? A . n A 1 4 ARG 4 40 40 ARG ARG A . n A 1 5 CYS 5 41 41 CYS CYS A . n A 1 6 ARG 6 42 42 ARG ARG A . n A 1 7 HIS 7 43 43 HIS HIS A . n A 1 8 GLN 8 44 44 GLN GLN A . n A 1 9 PHE 9 45 45 PHE PHE A . n A 1 10 GLN 10 46 46 GLN GLN A . n A 1 11 THR 11 47 47 THR THR A . n A 1 12 GLN 12 48 48 GLN GLN A . n A 1 13 GLN 13 49 49 GLN GLN A . n A 1 14 ARG 14 50 50 ARG ARG A . n A 1 15 LEU 15 51 51 LEU LEU A . n A 1 16 ARG 16 52 52 ARG ARG A . n A 1 17 ALA 17 53 53 ALA ALA A . n A 1 18 CYS 18 54 54 CYS CYS A . n A 1 19 GLN 19 55 55 GLN GLN A . n A 1 20 ARG 20 56 56 ARG ARG A . n A 1 21 VAL 21 57 57 VAL VAL A . n A 1 22 ILE 22 58 58 ILE ILE A . n A 1 23 ARG 23 59 59 ARG ARG A . n A 1 24 ARG 24 60 60 ARG ARG A . n A 1 25 TRP 25 61 61 TRP TRP A . n A 1 26 SER 26 62 62 SER SER A . n A 1 27 GLN 27 63 63 GLN GLN A . n A 1 28 GLY 28 64 ? ? ? A . n A 1 29 GLY 29 65 ? ? ? A . n A 1 30 GLY 30 66 ? ? ? A . n A 1 31 PRO 31 67 ? ? ? A . n A 1 32 MET 32 68 ? ? ? A . n A 1 33 GLU 33 69 ? ? ? A . n A 1 34 ASP 34 70 ? ? ? A . n A 1 35 VAL 35 71 ? ? ? A . n A 1 36 GLU 36 72 ? ? ? A . n A 1 37 ASP 37 73 ? ? ? A . n A 1 38 GLU 38 74 ? ? ? A . n A 1 39 ILE 39 75 ? ? ? A . n A 1 40 ASP 40 76 ? ? ? A . n A 1 41 GLU 41 77 ? ? ? A . n A 1 42 THR 42 78 ? ? ? A . n A 1 43 ASP 43 79 ? ? ? A . n A 1 44 GLU 44 80 ? ? ? A . n A 1 45 ILE 45 81 ? ? ? A . n A 1 46 GLU 46 82 ? ? ? A . n A 1 47 GLU 47 83 ? ? ? A . n A 1 48 VAL 48 84 ? ? ? A . n A 1 49 VAL 49 85 ? ? ? A . n A 1 50 GLU 50 86 ? ? ? A . n A 1 51 PRO 51 87 ? ? ? A . n A 1 52 ASP 52 88 ? ? ? A . n A 1 53 GLN 53 89 ? ? ? A . n A 1 54 ALA 54 90 ? ? ? A . n A 1 55 ARG 55 91 ? ? ? A . n A 1 56 ARG 56 92 ? ? ? A . n A 1 57 PRO 57 93 93 PRO PRO A . n A 1 58 PRO 58 94 94 PRO PRO A . n A 1 59 THR 59 95 95 THR THR A . n A 1 60 LEU 60 96 96 LEU LEU A . n A 1 61 GLN 61 97 97 GLN GLN A . n A 1 62 ARG 62 98 98 ARG ARG A . n A 1 63 CYS 63 99 99 CYS CYS A . n A 1 64 CYS 64 100 100 CYS CYS A . n A 1 65 ARG 65 101 101 ARG ARG A . n A 1 66 GLN 66 102 102 GLN GLN A . n A 1 67 LEU 67 103 103 LEU LEU A . n A 1 68 ARG 68 104 104 ARG ARG A . n A 1 69 ASN 69 105 105 ASN ASN A . n A 1 70 VAL 70 106 106 VAL VAL A . n A 1 71 SER 71 107 107 SER SER A . n A 1 72 PRO 72 108 108 PRO PRO A . n A 1 73 PHE 73 109 109 PHE PHE A . n A 1 74 CYS 74 110 110 CYS CYS A . n A 1 75 ARG 75 111 111 ARG ARG A . n A 1 76 CYS 76 112 112 CYS CYS A . n A 1 77 PRO 77 113 113 PRO PRO A . n A 1 78 SER 78 114 114 SER SER A . n A 1 79 LEU 79 115 115 LEU LEU A . n A 1 80 ARG 80 116 116 ARG ARG A . n A 1 81 GLN 81 117 117 GLN GLN A . n A 1 82 ALA 82 118 118 ALA ALA A . n A 1 83 VAL 83 119 119 VAL VAL A . n A 1 84 GLN 84 120 120 GLN GLN A . n A 1 85 SER 85 121 121 SER SER A . n A 1 86 ALA 86 122 122 ALA ALA A . n A 1 87 GLN 87 123 123 GLN GLN A . n A 1 88 GLN 88 124 124 GLN GLN A . n A 1 89 GLN 89 125 125 GLN GLN A . n A 1 90 GLN 90 126 126 GLN GLN A . n A 1 91 GLY 91 127 127 GLY GLY A . n A 1 92 GLN 92 128 128 GLN GLN A . n A 1 93 VAL 93 129 129 VAL VAL A . n A 1 94 GLY 94 130 130 GLY GLY A . n A 1 95 PRO 95 131 131 PRO PRO A . n A 1 96 GLN 96 132 132 GLN GLN A . n A 1 97 GLN 97 133 133 GLN GLN A . n A 1 98 VAL 98 134 134 VAL VAL A . n A 1 99 GLY 99 135 135 GLY GLY A . n A 1 100 HIS 100 136 136 HIS HIS A . n A 1 101 MET 101 137 137 MET MET A . n A 1 102 TYR 102 138 138 TYR TYR A . n A 1 103 ARG 103 139 139 ARG ARG A . n A 1 104 VAL 104 140 140 VAL VAL A . n A 1 105 ALA 105 141 141 ALA ALA A . n A 1 106 SER 106 142 142 SER SER A . n A 1 107 ARG 107 143 143 ARG ARG A . n A 1 108 ILE 108 144 144 ILE ILE A . n A 1 109 PRO 109 145 145 PRO PRO A . n A 1 110 ALA 110 146 146 ALA ALA A . n A 1 111 ILE 111 147 147 ILE ILE A . n A 1 112 CYS 112 148 148 CYS CYS A . n A 1 113 ASN 113 149 149 ASN ASN A . n A 1 114 LEU 114 150 150 LEU LEU A . n A 1 115 GLN 115 151 151 GLN GLN A . n A 1 116 PRO 116 152 152 PRO PRO A . n A 1 117 MET 117 153 153 MET MET A . n A 1 118 ARG 118 154 154 ARG ARG A . n A 1 119 CYS 119 155 155 CYS CYS A . n A 1 120 PRO 120 156 156 PRO PRO A . n A 1 121 PHE 121 157 157 PHE PHE A . n A 1 122 ARG 122 158 158 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 2 EDO EDO A . C 3 ACT 1 202 1 ACT ACT A . D 4 HOH 1 301 44 HOH HOH A . D 4 HOH 2 302 48 HOH HOH A . D 4 HOH 3 303 35 HOH HOH A . D 4 HOH 4 304 43 HOH HOH A . D 4 HOH 5 305 24 HOH HOH A . D 4 HOH 6 306 8 HOH HOH A . D 4 HOH 7 307 45 HOH HOH A . D 4 HOH 8 308 12 HOH HOH A . D 4 HOH 9 309 49 HOH HOH A . D 4 HOH 10 310 34 HOH HOH A . D 4 HOH 11 311 6 HOH HOH A . D 4 HOH 12 312 20 HOH HOH A . D 4 HOH 13 313 18 HOH HOH A . D 4 HOH 14 314 13 HOH HOH A . D 4 HOH 15 315 28 HOH HOH A . D 4 HOH 16 316 23 HOH HOH A . D 4 HOH 17 317 4 HOH HOH A . D 4 HOH 18 318 37 HOH HOH A . D 4 HOH 19 319 2 HOH HOH A . D 4 HOH 20 320 9 HOH HOH A . D 4 HOH 21 321 19 HOH HOH A . D 4 HOH 22 322 42 HOH HOH A . D 4 HOH 23 323 50 HOH HOH A . D 4 HOH 24 324 1 HOH HOH A . D 4 HOH 25 325 5 HOH HOH A . D 4 HOH 26 326 25 HOH HOH A . D 4 HOH 27 327 30 HOH HOH A . D 4 HOH 28 328 39 HOH HOH A . D 4 HOH 29 329 26 HOH HOH A . D 4 HOH 30 330 29 HOH HOH A . D 4 HOH 31 331 21 HOH HOH A . D 4 HOH 32 332 17 HOH HOH A . D 4 HOH 33 333 3 HOH HOH A . D 4 HOH 34 334 11 HOH HOH A . D 4 HOH 35 335 33 HOH HOH A . D 4 HOH 36 336 41 HOH HOH A . D 4 HOH 37 337 47 HOH HOH A . D 4 HOH 38 338 7 HOH HOH A . D 4 HOH 39 339 46 HOH HOH A . D 4 HOH 40 340 36 HOH HOH A . D 4 HOH 41 341 22 HOH HOH A . D 4 HOH 42 342 32 HOH HOH A . D 4 HOH 43 343 31 HOH HOH A . D 4 HOH 44 344 16 HOH HOH A . D 4 HOH 45 345 14 HOH HOH A . D 4 HOH 46 346 38 HOH HOH A . D 4 HOH 47 347 27 HOH HOH A . D 4 HOH 48 348 10 HOH HOH A . D 4 HOH 49 349 40 HOH HOH A . D 4 HOH 50 350 15 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 337 ? D HOH . 2 1 A HOH 339 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-11 2 'Structure model' 1 1 2015-12-16 3 'Structure model' 1 2 2019-04-17 4 'Structure model' 1 3 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 4 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0107 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 302 ? ? 1_555 O A HOH 302 ? ? 10_665 0.92 2 1 O A HOH 309 ? ? 1_555 O A HOH 309 ? ? 8_666 1.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 51 ? ? CG A LEU 51 ? ? CD1 A LEU 51 ? ? 121.48 111.00 10.48 1.70 N 2 1 NE A ARG 111 ? ? CZ A ARG 111 ? ? NH2 A ARG 111 ? ? 117.06 120.30 -3.24 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 48 ? ? -90.29 48.93 2 1 MET A 153 ? ? 81.55 -29.64 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 37 ? A GLN 1 2 1 Y 1 A GLN 38 ? A GLN 2 3 1 Y 1 A GLN 39 ? A GLN 3 4 1 Y 1 A GLY 64 ? A GLY 28 5 1 Y 1 A GLY 65 ? A GLY 29 6 1 Y 1 A GLY 66 ? A GLY 30 7 1 Y 1 A PRO 67 ? A PRO 31 8 1 Y 1 A MET 68 ? A MET 32 9 1 Y 1 A GLU 69 ? A GLU 33 10 1 Y 1 A ASP 70 ? A ASP 34 11 1 Y 1 A VAL 71 ? A VAL 35 12 1 Y 1 A GLU 72 ? A GLU 36 13 1 Y 1 A ASP 73 ? A ASP 37 14 1 Y 1 A GLU 74 ? A GLU 38 15 1 Y 1 A ILE 75 ? A ILE 39 16 1 Y 1 A ASP 76 ? A ASP 40 17 1 Y 1 A GLU 77 ? A GLU 41 18 1 Y 1 A THR 78 ? A THR 42 19 1 Y 1 A ASP 79 ? A ASP 43 20 1 Y 1 A GLU 80 ? A GLU 44 21 1 Y 1 A ILE 81 ? A ILE 45 22 1 Y 1 A GLU 82 ? A GLU 46 23 1 Y 1 A GLU 83 ? A GLU 47 24 1 Y 1 A VAL 84 ? A VAL 48 25 1 Y 1 A VAL 85 ? A VAL 49 26 1 Y 1 A GLU 86 ? A GLU 50 27 1 Y 1 A PRO 87 ? A PRO 51 28 1 Y 1 A ASP 88 ? A ASP 52 29 1 Y 1 A GLN 89 ? A GLN 53 30 1 Y 1 A ALA 90 ? A ALA 54 31 1 Y 1 A ARG 91 ? A ARG 55 32 1 Y 1 A ARG 92 ? A ARG 56 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Sao Paulo Research Foundation (FAPESP)' Brazil ? 1 'Brazilian National Council for Scientific and Technological Development (CNPq)' Brazil ? 2 CAPES Brazil ? 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'ACETATE ION' ACT 4 water HOH #