HEADER    OXIDOREDUCTASE                          11-SEP-15   5DOQ              
TITLE     THE STRUCTURE OF BD OXIDASE FROM GEOBACILLUS THERMODENITRIFICANS      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: BD-TYPE QUINOL OXIDASE SUBUNIT I;                          
COMPND   3 CHAIN: A;                                                            
COMPND   4 MOL_ID: 2;                                                           
COMPND   5 MOLECULE: BD-TYPE QUINOL OXIDASE SUBUNIT II;                         
COMPND   6 CHAIN: B;                                                            
COMPND   7 MOL_ID: 3;                                                           
COMPND   8 MOLECULE: PUTATIVE MEMBRANE PROTEIN;                                 
COMPND   9 CHAIN: C                                                             
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS (STRAIN NG80-   
SOURCE   3 2);                                                                  
SOURCE   4 ORGANISM_TAXID: 420246;                                              
SOURCE   5 STRAIN: NG80-2;                                                      
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS (STRAIN NG80-   
SOURCE   8 2);                                                                  
SOURCE   9 ORGANISM_TAXID: 420246;                                              
SOURCE  10 STRAIN: NG80-2;                                                      
SOURCE  11 MOL_ID: 3;                                                           
SOURCE  12 ORGANISM_SCIENTIFIC: GEOBACILLUS SP. PA-3;                           
SOURCE  13 ORGANISM_TAXID: 1699078                                              
KEYWDS    BD OXIDASE, TERMINAL OXIDASE, OXIDOREDUCTASE                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.SAFARIAN,H.MUELLER,C.RAJENDRAN,J.PREU,S.OVCHINNIKOV,T.KUSUMOTO,     
AUTHOR   2 T.HIROSE,J.LANGER,J.SAKAMOTO,H.MICHEL                                
REVDAT   3   08-MAY-24 5DOQ    1       REMARK                                   
REVDAT   2   18-APR-18 5DOQ    1       JRNL                                     
REVDAT   1   04-MAY-16 5DOQ    0                                                
JRNL        AUTH   S.SAFARIAN,C.RAJENDRAN,H.MULLER,J.PREU,J.D.LANGER,           
JRNL        AUTH 2 S.OVCHINNIKOV,T.HIROSE,T.KUSUMOTO,J.SAKAMOTO,H.MICHEL        
JRNL        TITL   STRUCTURE OF A BD OXIDASE INDICATES SIMILAR MECHANISMS FOR   
JRNL        TITL 2 MEMBRANE-INTEGRATED OXYGEN REDUCTASES.                       
JRNL        REF    SCIENCE                       V. 352   583 2016              
JRNL        REFN                   ESSN 1095-9203                               
JRNL        PMID   27126043                                                     
JRNL        DOI    10.1126/SCIENCE.AAF2477                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    3.05 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0073                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 20.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 57.0                           
REMARK   3   NUMBER OF REFLECTIONS             : 17360                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.320                           
REMARK   3   R VALUE            (WORKING SET) : 0.319                           
REMARK   3   FREE R VALUE                     : 0.335                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.900                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 897                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 3.05                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 3.12                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 66                           
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 2.95                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.6140                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 1                            
REMARK   3   BIN FREE R VALUE                    : 1.1820                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 6341                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 130                                     
REMARK   3   SOLVENT ATOMS            : 0                                       
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 120.3                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.15000                                             
REMARK   3    B22 (A**2) : -0.02000                                             
REMARK   3    B33 (A**2) : 0.17000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): NULL          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.763         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.588         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.631        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.879                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.873                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  6693 ; 0.007 ; 0.019       
REMARK   3   BOND LENGTHS OTHERS               (A):  6517 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  9191 ; 1.112 ; 1.972       
REMARK   3   BOND ANGLES OTHERS          (DEGREES): 14681 ; 0.733 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   789 ; 6.130 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   261 ;34.822 ;22.299       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  1004 ;12.088 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    27 ;10.966 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):  1025 ; 0.053 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  7382 ; 0.004 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  1623 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN    
REMARK   3  THE INPUT                                                           
REMARK   4                                                                      
REMARK   4 5DOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-15.                  
REMARK 100 THE DEPOSITION ID IS D_1000213561.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 01-DEC-14                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6                                  
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SLS                                
REMARK 200  BEAMLINE                       : X10SA                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.738290                           
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 6M                 
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE                             
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 18373                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 3.050                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 56.7                               
REMARK 200  DATA REDUNDANCY                : 31.44                              
REMARK 200  R MERGE                    (I) : 0.09900                            
REMARK 200  R SYM                      (I) : 0.09700                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 19.1700                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 3.12                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 2.6                                
REMARK 200  DATA REDUNDANCY IN SHELL       : 19.15                              
REMARK 200  R MERGE FOR SHELL          (I) : 2.20000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.030                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: SHELX, PHENIX                                         
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 71.99                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.39                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, AMMONIUM SULFATE, NA-HEPES,     
REMARK 280  VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       55.03000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       61.36000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       60.43000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       61.36000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       55.03000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       60.43000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 11050 ANGSTROM**2                         
REMARK 350 SURFACE AREA OF THE COMPLEX: 31500 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL                       
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     VAL A   433                                                      
REMARK 465     GLU A   434                                                      
REMARK 465     ARG A   435                                                      
REMARK 465     GLU A   436                                                      
REMARK 465     LEU A   437                                                      
REMARK 465     GLU A   438                                                      
REMARK 465     GLU A   439                                                      
REMARK 465     ARG A   440                                                      
REMARK 465     ALA A   441                                                      
REMARK 465     ASN A   442                                                      
REMARK 465     ARG A   443                                                      
REMARK 465     GLY A   444                                                      
REMARK 465     GLU A   445                                                      
REMARK 465     VAL A   446                                                      
REMARK 465     ALA A   447                                                      
REMARK 465     PRO A   448                                                      
REMARK 465     ALA B   331                                                      
REMARK 465     TYR B   332                                                      
REMARK 465     VAL B   333                                                      
REMARK 465     LYS B   334                                                      
REMARK 465     GLY B   335                                                      
REMARK 465     LYS B   336                                                      
REMARK 465     TRP B   337                                                      
REMARK 465     GLU B   338                                                      
REMARK 465     GLY B   339                                                      
REMARK 465     GLY B   340                                                      
REMARK 465     LYS B   341                                                      
REMARK 465     GLY B   342                                                      
REMARK 465     MET C   763                                                      
REMARK 465     GLN C   764                                                      
REMARK 465     THR C   765                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A   4      -36.16   -136.17                                   
REMARK 500    ALA A  25      -59.54   -133.38                                   
REMARK 500    MET A  48       42.79    -86.81                                   
REMARK 500    LEU A  79      -77.55    -39.95                                   
REMARK 500    LEU A  89      -62.80    -96.32                                   
REMARK 500    ARG A 121      -63.23   -149.31                                   
REMARK 500    ASN A 124      145.74     68.85                                   
REMARK 500    PRO A 156      177.20    -51.25                                   
REMARK 500    GLN A 157     -123.89   -129.88                                   
REMARK 500    ASN A 163       49.72     38.20                                   
REMARK 500    PHE A 176       49.95    -94.07                                   
REMARK 500    SER A 191      -34.60   -172.78                                   
REMARK 500    LYS A 209     -101.06    -77.38                                   
REMARK 500    ASN A 211       70.33    -60.13                                   
REMARK 500    ILE A 214      -92.31    -12.01                                   
REMARK 500    HIS A 259       73.62   -102.26                                   
REMARK 500    SER A 264      -70.33    -75.83                                   
REMARK 500    GLU A 276      -33.83    -28.82                                   
REMARK 500    ASP A 277       59.14   -105.52                                   
REMARK 500    ASN A 278       77.92     49.35                                   
REMARK 500    LYS A 281     -104.56   -102.70                                   
REMARK 500    ALA A 289      -65.62    -98.46                                   
REMARK 500    LEU A 290       62.40    -69.07                                   
REMARK 500    SER A 291      -47.78   -169.74                                   
REMARK 500    TYR A 339      -70.07    -36.28                                   
REMARK 500    LEU A 341      -78.19    -66.64                                   
REMARK 500    ILE A 344      -61.63   -125.81                                   
REMARK 500    ARG A 346      -91.73   -139.47                                   
REMARK 500    LYS A 348       62.06     24.59                                   
REMARK 500    LEU A 386        1.29    -68.60                                   
REMARK 500    ARG A 387      -86.13   -121.40                                   
REMARK 500    TYR A 389      -99.89    -96.88                                   
REMARK 500    GLU A 394       44.03   -103.83                                   
REMARK 500    THR A 397      -81.94   -122.55                                   
REMARK 500    SER A 399      -62.85    -99.15                                   
REMARK 500    PHE B  30      -68.78   -178.38                                   
REMARK 500    ASN B  39       81.90     62.61                                   
REMARK 500    TYR B  80      -74.93    -68.34                                   
REMARK 500    ARG B 113      -38.82    -36.31                                   
REMARK 500    GLU B 145     -150.57   -110.61                                   
REMARK 500    ASN B 146      -89.18    -82.52                                   
REMARK 500    ALA B 148       34.83   -159.89                                   
REMARK 500    SER B 170      -79.12    -89.27                                   
REMARK 500    PRO B 208      -43.03    -26.29                                   
REMARK 500    HIS B 223      -79.20    -97.16                                   
REMARK 500    ARG B 254     -100.39   -106.68                                   
REMARK 500    GLN B 268      -74.52    -52.51                                   
REMARK 500    LEU B 285      -67.63     76.97                                   
REMARK 500    LYS C 789      -73.92    -71.42                                   
REMARK 500    ASP C 790       49.81   -108.93                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      51 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             HEB A 502  FE                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A  21   NE2                                                    
REMARK 620 2 HEB A 502   NA  102.3                                              
REMARK 620 3 HEB A 502   NB   91.8  93.1                                        
REMARK 620 4 HEB A 502   NC   78.7 173.9  92.9                                  
REMARK 620 5 HEB A 502   ND   88.7  90.5 176.2  83.5                            
REMARK 620 6 GLU A 101   OE2 165.4  90.4  80.3  89.4  98.4                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             HEB A 501  FE                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A 186   NE2                                                    
REMARK 620 2 HEB A 501   NA  103.4                                              
REMARK 620 3 HEB A 501   NB  107.3  91.6                                        
REMARK 620 4 HEB A 501   NC   75.2 173.9  94.5                                  
REMARK 620 5 HEB A 501   ND   72.7  91.3 177.1  82.6                            
REMARK 620 6 MET A 325   SD  153.8 102.7  74.9  78.6 103.7                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                             HDD A 503  FE                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 GLU A 378   OE2                                                    
REMARK 620 2 HDD A 503   NA   62.2                                              
REMARK 620 3 HDD A 503   NB   72.1  88.7                                        
REMARK 620 4 HDD A 503   NC  107.7 169.9  87.5                                  
REMARK 620 5 HDD A 503   ND  101.1  92.6 171.5  89.8                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue HEB A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue HEB A 502                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue HDD A 503                 
DBREF  5DOQ A    1   448  UNP    A4IKP6   A4IKP6_GEOTN     1    448             
DBREF  5DOQ B    1   342  UNP    A4IKP7   A4IKP7_GEOTN     1    342             
DBREF1 5DOQ C  763   795  UNP                  A0A0Q0UXS2_9BACI                 
DBREF2 5DOQ C     A0A0Q0UXS2                          1          33             
SEQADV 5DOQ GLU A  123  UNP  A4IKP6    LYS   123 CONFLICT                       
SEQADV 5DOQ ASN B  146  UNP  A4IKP7    SER   146 CONFLICT                       
SEQRES   1 A  448  MET ASN GLY TYR ASP PRO VAL LEU LEU SER ARG ILE LEU          
SEQRES   2 A  448  THR GLU LEU THR LEU THR VAL HIS ILE ILE TYR ALA THR          
SEQRES   3 A  448  ILE GLY VAL GLY VAL PRO LEU MET ILE ALA ILE ALA GLN          
SEQRES   4 A  448  TRP VAL GLY ILE ARG LYS ASN ASP MET HIS TYR ILE LEU          
SEQRES   5 A  448  LEU ALA ARG ARG TRP THR ARG GLY PHE VAL ILE THR VAL          
SEQRES   6 A  448  ALA VAL GLY VAL VAL THR GLY THR ALA ILE GLY LEU GLN          
SEQRES   7 A  448  LEU SER LEU LEU TRP PRO ASN PHE MET GLN LEU ALA GLY          
SEQRES   8 A  448  GLN VAL ILE SER LEU PRO LEU PHE MET GLU THR PHE ALA          
SEQRES   9 A  448  PHE PHE PHE GLU ALA ILE PHE LEU GLY ILE TYR LEU TYR          
SEQRES  10 A  448  THR TRP ASP ARG PHE GLU ASN GLN LYS LYS HIS LEU LEU          
SEQRES  11 A  448  LEU LEU ILE PRO VAL ALA ILE GLY SER SER ALA SER ALA          
SEQRES  12 A  448  MET PHE ILE THR MET VAL ASN ALA PHE MET ASN THR PRO          
SEQRES  13 A  448  GLN GLY PHE GLU LEU LYS ASN GLY GLU LEU VAL ASN ILE          
SEQRES  14 A  448  ASP PRO ILE VAL ALA MET PHE ASN PRO ALA MET PRO THR          
SEQRES  15 A  448  LYS VAL ALA HIS VAL LEU ALA THR SER TYR MET THR SER          
SEQRES  16 A  448  ALA PHE VAL LEU ALA SER ILE ALA ALA TRP HIS LEU TRP          
SEQRES  17 A  448  LYS GLY ASN ARG HIS ILE TYR HIS ARG LYS ALA LEU HIS          
SEQRES  18 A  448  LEU THR MET LYS THR ALA PHE ILE PHE SER VAL ALA SER          
SEQRES  19 A  448  ALA LEU VAL GLY ASP LEU SER GLY LYS PHE LEU ALA GLU          
SEQRES  20 A  448  TYR GLN PRO GLU LYS LEU ALA ALA ALA GLU TRP HIS PHE          
SEQRES  21 A  448  GLU THR SER SER HIS ALA PRO LEU ILE LEU PHE GLY THR          
SEQRES  22 A  448  LEU GLU GLU ASP ASN GLU VAL LYS TYR ALA LEU GLU ILE          
SEQRES  23 A  448  PRO TYR ALA LEU SER ILE LEU ALA HIS ASN HIS PRO ALA          
SEQRES  24 A  448  ALA VAL VAL THR GLY LEU ASN ASP ILE PRO GLU ASP GLU          
SEQRES  25 A  448  ARG PRO PRO LEU TYR ILE HIS TYR LEU PHE ASP VAL MET          
SEQRES  26 A  448  VAL THR ILE GLY VAL PHE LEU MET VAL VAL ALA ALA VAL          
SEQRES  27 A  448  TYR TRP LEU GLY SER ILE PHE ARG TRP LYS TRP THR ALA          
SEQRES  28 A  448  LYS ASN TRP PHE PHE GLY LEU LEU VAL ALA GLY GLY PRO          
SEQRES  29 A  448  LEU ALA MET ILE ALA ILE GLU ALA GLY TRP TYR LEU ALA          
SEQRES  30 A  448  GLU VAL GLY ARG GLN PRO TRP ILE LEU ARG GLY TYR MET          
SEQRES  31 A  448  LYS THR ALA GLU GLY ALA THR THR SER ALA HIS VAL ASP          
SEQRES  32 A  448  THR MET LEU VAL LEU PHE CYS LEU LEU TYR ILE VAL LEU          
SEQRES  33 A  448  VAL ILE ALA SER ALA THR VAL LEU ILE ARG MET PHE ARG          
SEQRES  34 A  448  ARG ASN PRO VAL GLU ARG GLU LEU GLU GLU ARG ALA ASN          
SEQRES  35 A  448  ARG GLY GLU VAL ALA PRO                                      
SEQRES   1 B  342  MET THR LEU GLU VAL ILE GLY ILE SER VAL LEU TRP LEU          
SEQRES   2 B  342  PHE LEU PHE GLY TYR ILE ILE VAL ALA SER ILE ASP PHE          
SEQRES   3 B  342  GLY ALA GLY PHE PHE SER VAL TYR SER HIS TRP ALA ASN          
SEQRES   4 B  342  GLN GLN HIS ILE LEU HIS ARG ILE ILE GLN ARG TYR LEU          
SEQRES   5 B  342  SER PRO VAL TRP GLU VAL THR ASN VAL PHE LEU VAL PHE          
SEQRES   6 B  342  PHE PHE VAL GLY ILE VAL GLY PHE PHE PRO LYS THR ALA          
SEQRES   7 B  342  TYR TYR TYR GLY SER ILE LEU LEU VAL PRO ALA SER ILE          
SEQRES   8 B  342  ALA ILE VAL LEU LEU ALA ILE ARG GLY SER TYR TYR ALA          
SEQRES   9 B  342  PHE HIS THR TYR GLY GLU THR GLU ARG ASN TRP TYR LEU          
SEQRES  10 B  342  LEU ALA TYR GLY LEU THR GLY LEU PHE ILE PRO ALA SER          
SEQRES  11 B  342  LEU SER ILE VAL LEU THR ILE SER GLU GLY GLY PHE VAL          
SEQRES  12 B  342  GLU GLU ASN ALA ALA GLY VAL ALA LEU ASP TYR GLY LYS          
SEQRES  13 B  342  LEU PHE ALA SER PRO LEU SER TRP SER VAL VAL LEU LEU          
SEQRES  14 B  342  SER VAL THR SER VAL LEU TYR ILE SER ALA VAL PHE LEU          
SEQRES  15 B  342  THR TYR TYR ALA ASP ALA ALA GLY ASP GLU GLN ALA ARG          
SEQRES  16 B  342  ALA LEU LEU ARG ARG TYR ALA LEU LEU TRP SER GLY PRO          
SEQRES  17 B  342  THR MET LEU SER ALA LEU LEU ILE ILE TYR GLN LEU ARG          
SEQRES  18 B  342  TYR HIS ASN PRO GLU HIS TYR ASP ASN LEU TRP ASN VAL          
SEQRES  19 B  342  ALA TRP MET LEU VAL ILE SER PHE LEU PHE PHE VAL ILE          
SEQRES  20 B  342  THR VAL TRP LEU LEU GLY ARG GLN ARG ARG PHE GLY TRP          
SEQRES  21 B  342  ALA PHE ILE ALA LEU LEU PHE GLN TYR ALA PHE ALA PHE          
SEQRES  22 B  342  TYR ALA TYR GLY ILE SER HIS TYR PRO TYR LEU LEU TYR          
SEQRES  23 B  342  PRO TYR LEU THR ILE TYR ASP GLY PHE THR ASN GLU THR          
SEQRES  24 B  342  MET ALA MET ALA LEU ILE VAL ALA PHE ILE ALA GLY LEU          
SEQRES  25 B  342  LEU LEU LEU ILE PRO SER LEU TYR LEU LEU MET ARG LEU          
SEQRES  26 B  342  PHE LEU PHE ASN LYS ALA TYR VAL LYS GLY LYS TRP GLU          
SEQRES  27 B  342  GLY GLY LYS GLY                                              
SEQRES   1 C   33  MET GLN THR PHE LEU ILE MET TYR ALA PRO MET VAL VAL          
SEQRES   2 C   33  VAL ALA LEU SER VAL VAL ALA ALA PHE TRP VAL GLY LEU          
SEQRES   3 C   33  LYS ASP VAL HIS VAL ASN GLU                                  
HET    HEB  A 501      43                                                       
HET    HEB  A 502      43                                                       
HET    HDD  A 503      44                                                       
HETNAM     HEB HEME B/C                                                         
HETNAM     HDD CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE                     
HETSYN     HEB HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX             
HETSYN   2 HEB  CONTAINING FE)                                                  
HETSYN     HDD HEME                                                             
FORMUL   4  HEB    2(C34 H34 FE N4 O4)                                          
FORMUL   6  HDD    C34 H32 FE N4 O5                                             
HELIX    1 AA1 TYR A    4  TYR A   24  1                                  21    
HELIX    2 AA2 ALA A   25  ASN A   46  1                                  22    
HELIX    3 AA3 HIS A   49  TRP A   83  1                                  35    
HELIX    4 AA4 TRP A   83  TRP A  119  1                                  37    
HELIX    5 AA5 GLN A  125  THR A  155  1                                  31    
HELIX    6 AA6 ASP A  170  PHE A  176  1                                   7    
HELIX    7 AA7 ALA A  179  LYS A  209  1                                  31    
HELIX    8 AA8 ARG A  212  GLN A  249  1                                  38    
HELIX    9 AA9 GLN A  249  GLU A  257  1                                   9    
HELIX   10 AB1 TYR A  317  SER A  343  1                                  27    
HELIX   11 AB2 LYS A  352  GLY A  380  1                                  29    
HELIX   12 AB3 ARG A  381  LEU A  386  1                                   6    
HELIX   13 AB4 LYS A  391  GLY A  395  5                                   5    
HELIX   14 AB5 HIS A  401  ASN A  431  1                                  31    
HELIX   15 AB6 THR B    2  HIS B   36  1                                  35    
HELIX   16 AB7 GLN B   41  ARG B   50  1                                  10    
HELIX   17 AB8 LEU B   52  PHE B   74  1                                  23    
HELIX   18 AB9 PHE B   74  LEU B   85  1                                  12    
HELIX   19 AC1 LEU B   85  TYR B  108  1                                  24    
HELIX   20 AC2 GLY B  109  TYR B  116  1                                   8    
HELIX   21 AC3 LEU B  117  SER B  138  1                                  22    
HELIX   22 AC4 ASP B  153  LEU B  157  5                                   5    
HELIX   23 AC5 LEU B  162  TYR B  185  1                                  24    
HELIX   24 AC6 ASP B  191  GLY B  207  1                                  17    
HELIX   25 AC7 GLY B  207  ARG B  221  1                                  15    
HELIX   26 AC8 ASN B  224  VAL B  234  1                                  11    
HELIX   27 AC9 VAL B  234  ARG B  254  1                                  21    
HELIX   28 AD1 PHE B  258  TYR B  281  1                                  24    
HELIX   29 AD2 GLU B  298  PHE B  326  1                                  29    
HELIX   30 AD3 LEU C  767  ASP C  790  1                                  24    
SHEET    1 AA1 2 GLU A 160  LYS A 162  0                                        
SHEET    2 AA1 2 GLU A 165  VAL A 167 -1  O  GLU A 165   N  LYS A 162           
SHEET    1 AA2 2 LEU A 268  LEU A 274  0                                        
SHEET    2 AA2 2 VAL A 280  ILE A 286 -1  O  LEU A 284   N  LEU A 270           
LINK         NE2 HIS A  21                FE   HEB A 502     1555   1555  2.78  
LINK         OE2 GLU A 101                FE   HEB A 502     1555   1555  2.11  
LINK         NE2 HIS A 186                FE   HEB A 501     1555   1555  2.30  
LINK         SD  MET A 325                FE   HEB A 501     1555   1555  2.58  
LINK         OE2 GLU A 378                FE   HDD A 503     1555   1555  2.73  
CISPEP   1 PRO A  156    GLN A  157          0         7.56                     
CISPEP   2 TYR B  281    PRO B  282          0        -6.00                     
SITE     1 AC1 17 LYS A 183  HIS A 186  THR A 190  GLY A 238                    
SITE     2 AC1 17 SER A 241  GLY A 242  LEU A 245  LYS A 252                    
SITE     3 AC1 17 MET A 325  VAL A 326  GLY A 329  ALA A 366                    
SITE     4 AC1 17 ALA A 369  ILE A 370  GLY A 373  TRP A 374                    
SITE     5 AC1 17 ALA A 377                                                     
SITE     1 AC2 17 HIS A  21  TYR A  24  ALA A  25  VAL A  65                    
SITE     2 AC2 17 GLY A  68  VAL A  69  GLY A  72  THR A  73                    
SITE     3 AC2 17 ILE A  75  GLY A  76  GLU A 101  THR A 102                    
SITE     4 AC2 17 PHE A 105  ILE A 146  HDD A 503  ASN B  60                    
SITE     5 AC2 17 VAL B  61                                                     
SITE     1 AC3 16 ARG A  11  GLU A  15  LEU A  18  THR A  19                    
SITE     2 AC3 16 ILE A  22  TRP A  83  ILE A 146  THR A 147                    
SITE     3 AC3 16 ASN A 150  MET A 153  TRP A 374  TYR A 375                    
SITE     4 AC3 16 GLU A 378  ARG A 381  GLN A 382  HEB A 502                    
CRYST1  110.060  120.860  122.720  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.009086  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.008274  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.008149        0.00000