data_5DP5 # _entry.id 5DP5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5DP5 WWPDB D_1000213592 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5DP3 PDB . unspecified 5DP4 PDB . unspecified 5DP6 PDB . unspecified 5DP7 PDB . unspecified 5DP8 PDB . unspecified 5DP9 PDB . unspecified 5DPA PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DP5 _pdbx_database_status.recvd_initial_deposition_date 2015-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wu, C.' 1 'Zhang, L.' 2 'Li, P.' 3 'Cai, Q.' 4 'Peng, X.' 5 'Li, N.' 6 'Cai, Y.' 7 'Li, J.' 8 'Lin, T.' 9 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_id_ASTM BBACAQ _citation.journal_id_CSD 0113 _citation.journal_id_ISSN 0006-3002 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 1860 _citation.language ? _citation.page_first 1299 _citation.page_last 1307 _citation.title 'Fragment-wise design of inhibitors to 3C proteinase from enterovirus 71' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbagen.2016.03.017 _citation.pdbx_database_id_PubMed 26987809 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wu, C.' 1 primary 'Zhang, L.' 2 primary 'Li, P.' 3 primary 'Cai, Q.' 4 primary 'Peng, X.' 5 primary 'Yin, K.' 6 primary 'Chen, X.' 7 primary 'Ren, H.' 8 primary 'Zhong, S.' 9 primary 'Weng, Y.' 10 primary 'Guan, Y.' 11 primary 'Chen, S.' 12 primary 'Wu, J.' 13 primary 'Li, J.' 14 primary 'Lin, T.' 15 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5DP5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.175 _cell.length_a_esd ? _cell.length_b 64.813 _cell.length_b_esd ? _cell.length_c 76.151 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3C proteinase' 19976.006 1 ? ? ? ? 2 non-polymer syn 'ethyl (2Z,4S)-4-{[(2R,5S)-5-amino-2-(4-fluorobenzyl)-6-methyl-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate' 489.580 1 ? ? ? ? 3 water nat water 18.015 87 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDT NEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIG IHIGGNGRQGFCAGLKRSYFA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDT NEKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIG IHIGGNGRQGFCAGLKRSYFA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 PRO n 1 4 SER n 1 5 LEU n 1 6 ASP n 1 7 PHE n 1 8 ALA n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 LEU n 1 13 ARG n 1 14 ARG n 1 15 ASN n 1 16 VAL n 1 17 ARG n 1 18 GLN n 1 19 VAL n 1 20 GLN n 1 21 THR n 1 22 ASP n 1 23 GLN n 1 24 GLY n 1 25 HIS n 1 26 PHE n 1 27 THR n 1 28 MET n 1 29 LEU n 1 30 GLY n 1 31 VAL n 1 32 ARG n 1 33 ASP n 1 34 ARG n 1 35 LEU n 1 36 ALA n 1 37 VAL n 1 38 LEU n 1 39 PRO n 1 40 ARG n 1 41 HIS n 1 42 SER n 1 43 GLN n 1 44 PRO n 1 45 GLY n 1 46 LYS n 1 47 THR n 1 48 ILE n 1 49 TRP n 1 50 ILE n 1 51 GLU n 1 52 HIS n 1 53 LYS n 1 54 LEU n 1 55 VAL n 1 56 ASN n 1 57 ILE n 1 58 LEU n 1 59 ASP n 1 60 ALA n 1 61 VAL n 1 62 GLU n 1 63 LEU n 1 64 VAL n 1 65 ASP n 1 66 GLU n 1 67 GLN n 1 68 GLY n 1 69 VAL n 1 70 ASN n 1 71 LEU n 1 72 GLU n 1 73 LEU n 1 74 THR n 1 75 LEU n 1 76 ILE n 1 77 THR n 1 78 LEU n 1 79 ASP n 1 80 THR n 1 81 ASN n 1 82 GLU n 1 83 LYS n 1 84 PHE n 1 85 ARG n 1 86 ASP n 1 87 ILE n 1 88 THR n 1 89 LYS n 1 90 PHE n 1 91 ILE n 1 92 PRO n 1 93 GLU n 1 94 ASN n 1 95 ILE n 1 96 SER n 1 97 THR n 1 98 ALA n 1 99 SER n 1 100 ASP n 1 101 ALA n 1 102 THR n 1 103 LEU n 1 104 VAL n 1 105 ILE n 1 106 ASN n 1 107 THR n 1 108 GLU n 1 109 HIS n 1 110 MET n 1 111 PRO n 1 112 SER n 1 113 MET n 1 114 PHE n 1 115 VAL n 1 116 PRO n 1 117 VAL n 1 118 GLY n 1 119 ASP n 1 120 VAL n 1 121 VAL n 1 122 GLN n 1 123 TYR n 1 124 GLY n 1 125 PHE n 1 126 LEU n 1 127 ASN n 1 128 LEU n 1 129 SER n 1 130 GLY n 1 131 LYS n 1 132 PRO n 1 133 THR n 1 134 HIS n 1 135 ARG n 1 136 THR n 1 137 MET n 1 138 MET n 1 139 TYR n 1 140 ASN n 1 141 PHE n 1 142 PRO n 1 143 THR n 1 144 LYS n 1 145 ALA n 1 146 GLY n 1 147 GLN n 1 148 CYS n 1 149 GLY n 1 150 GLY n 1 151 VAL n 1 152 VAL n 1 153 THR n 1 154 SER n 1 155 VAL n 1 156 GLY n 1 157 LYS n 1 158 VAL n 1 159 ILE n 1 160 GLY n 1 161 ILE n 1 162 HIS n 1 163 ILE n 1 164 GLY n 1 165 GLY n 1 166 ASN n 1 167 GLY n 1 168 ARG n 1 169 GLN n 1 170 GLY n 1 171 PHE n 1 172 CYS n 1 173 ALA n 1 174 GLY n 1 175 LEU n 1 176 LYS n 1 177 ARG n 1 178 SER n 1 179 TYR n 1 180 PHE n 1 181 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 181 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterovirus A71' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 39054 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A9XG43_9ENTO _struct_ref.pdbx_db_accession A9XG43 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPSLDFALSLLRRNVRQVQTDQGHFTMLGVRDRLAVLPRHSQPGKTIWIEHKLVNILDAVELVDEQGVNLELTLITLDTN EKFRDITKFIPENISTASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKVIGI HIGGNGRQGFCAGLKRSYFA ; _struct_ref.pdbx_align_begin 1549 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DP5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A9XG43 _struct_ref_seq.db_align_beg 1549 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1728 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 180 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5DP5 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A9XG43 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5E9 non-polymer . 'ethyl (2Z,4S)-4-{[(2R,5S)-5-amino-2-(4-fluorobenzyl)-6-methyl-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate' ? 'C26 H36 F N3 O5' 489.580 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DP5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100mM Tris, 25% PEG4000, 0.8M lithium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details mirrors _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-07-30 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DP5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.03 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8993 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 89.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] -0.9700 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 1.0900 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.1300 _refine.B_iso_max 52.620 _refine.B_iso_mean 24.2000 _refine.B_iso_min 12.030 _refine.correlation_coeff_Fo_to_Fc 0.9350 _refine.correlation_coeff_Fo_to_Fc_free 0.8880 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DP5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0300 _refine.ls_d_res_low 38.1000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8993 _refine.ls_number_reflns_R_free 454 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 89.8400 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2232 _refine.ls_R_factor_R_free 0.2905 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2198 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.3410 _refine.pdbx_overall_ESU_R_Free 0.2560 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.3900 _refine.overall_SU_ML 0.1720 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.0300 _refine_hist.d_res_low 38.1000 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 1523 _refine_hist.pdbx_number_residues_total 181 _refine_hist.pdbx_B_iso_mean_ligand 27.12 _refine_hist.pdbx_B_iso_mean_solvent 28.28 _refine_hist.pdbx_number_atoms_protein 1401 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.015 0.019 1465 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1435 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.763 1.984 1984 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.857 3.000 3292 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.659 5.000 180 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 37.528 23.710 62 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.031 15.000 247 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.851 15.000 10 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.101 0.200 229 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.021 1642 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 337 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.0350 _refine_ls_shell.d_res_low 2.0880 _refine_ls_shell.number_reflns_all 612 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_R_work 589 _refine_ls_shell.percent_reflns_obs 78.4600 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.4900 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3350 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5DP5 _struct.title 'Crystal Structure of EV71 3C Proteinase in complex with compound 4' _struct.pdbx_descriptor '3C proteinase' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DP5 _struct_keywords.text 'Hand, foot and mouth disease, 3C proteinase, peptidomimetics, drug design, rupintrivir, HYDROLASE-HYDROLASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 2 ? ASN A 15 ? GLY A 1 ASN A 14 1 ? 14 HELX_P HELX_P2 AA2 HIS A 41 ? GLN A 43 ? HIS A 40 GLN A 42 5 ? 3 HELX_P HELX_P3 AA3 ILE A 87 ? ILE A 91 ? ILE A 86 ILE A 90 5 ? 5 HELX_P HELX_P4 AA4 LYS A 176 ? ALA A 181 ? LYS A 175 ALA A 180 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id 5E9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C14 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5E9 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.768 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 16 ? THR A 21 ? VAL A 15 THR A 20 AA1 2 GLY A 24 ? ARG A 32 ? GLY A 23 ARG A 31 AA1 3 LEU A 35 ? PRO A 39 ? LEU A 34 PRO A 38 AA1 4 ASN A 70 ? LEU A 78 ? ASN A 69 LEU A 77 AA1 5 LYS A 53 ? VAL A 64 ? LYS A 52 VAL A 63 AA1 6 THR A 47 ? ILE A 50 ? THR A 46 ILE A 49 AA1 7 VAL A 16 ? THR A 21 ? VAL A 15 THR A 20 AA2 1 ALA A 98 ? ILE A 105 ? ALA A 97 ILE A 104 AA2 2 MET A 113 ? LEU A 128 ? MET A 112 LEU A 127 AA2 3 LYS A 131 ? TYR A 139 ? LYS A 130 TYR A 138 AA2 4 GLY A 170 ? GLY A 174 ? GLY A 169 GLY A 173 AA2 5 LYS A 157 ? GLY A 165 ? LYS A 156 GLY A 164 AA2 6 VAL A 151 ? SER A 154 ? VAL A 150 SER A 153 AA2 7 ALA A 98 ? ILE A 105 ? ALA A 97 ILE A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 17 ? N ARG A 16 O MET A 28 ? O MET A 27 AA1 2 3 N ARG A 32 ? N ARG A 31 O LEU A 35 ? O LEU A 34 AA1 3 4 N LEU A 38 ? N LEU A 37 O THR A 74 ? O THR A 73 AA1 4 5 O LEU A 75 ? O LEU A 74 N VAL A 61 ? N VAL A 60 AA1 5 6 O VAL A 55 ? O VAL A 54 N ILE A 48 ? N ILE A 47 AA1 6 7 O TRP A 49 ? O TRP A 48 N GLN A 20 ? N GLN A 19 AA2 1 2 N LEU A 103 ? N LEU A 102 O VAL A 115 ? O VAL A 114 AA2 2 3 N LEU A 128 ? N LEU A 127 O LYS A 131 ? O LYS A 130 AA2 3 4 N TYR A 139 ? N TYR A 138 O GLY A 170 ? O GLY A 169 AA2 4 5 O PHE A 171 ? O PHE A 170 N GLY A 164 ? N GLY A 163 AA2 5 6 O GLY A 160 ? O GLY A 159 N VAL A 152 ? N VAL A 151 AA2 6 7 O THR A 153 ? O THR A 152 N THR A 102 ? N THR A 101 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 5E9 _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'binding site for residue 5E9 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 GLN A 23 ? GLN A 22 . ? 1_555 ? 2 AC1 16 ARG A 40 ? ARG A 39 . ? 1_555 ? 3 AC1 16 HIS A 41 ? HIS A 40 . ? 1_555 ? 4 AC1 16 GLU A 72 ? GLU A 71 . ? 1_555 ? 5 AC1 16 LEU A 128 ? LEU A 127 . ? 1_555 ? 6 AC1 16 SER A 129 ? SER A 128 . ? 1_555 ? 7 AC1 16 LYS A 131 ? LYS A 130 . ? 1_555 ? 8 AC1 16 THR A 143 ? THR A 142 . ? 1_555 ? 9 AC1 16 LYS A 144 ? LYS A 143 . ? 1_555 ? 10 AC1 16 ALA A 145 ? ALA A 144 . ? 1_555 ? 11 AC1 16 GLY A 146 ? GLY A 145 . ? 1_555 ? 12 AC1 16 CYS A 148 ? CYS A 147 . ? 1_555 ? 13 AC1 16 HIS A 162 ? HIS A 161 . ? 1_555 ? 14 AC1 16 ILE A 163 ? ILE A 162 . ? 1_555 ? 15 AC1 16 GLY A 164 ? GLY A 163 . ? 1_555 ? 16 AC1 16 GLY A 165 ? GLY A 164 . ? 1_555 ? # _atom_sites.entry_id 5DP5 _atom_sites.fract_transf_matrix[1][1] 0.015582 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015429 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013132 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 ASP 6 5 5 ASP ASP A . n A 1 7 PHE 7 6 6 PHE PHE A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 ASN 15 14 14 ASN ASN A . n A 1 16 VAL 16 15 15 VAL VAL A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 HIS 25 24 24 HIS HIS A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 THR 27 26 26 THR THR A . n A 1 28 MET 28 27 27 MET MET A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 HIS 41 40 40 HIS HIS A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 TRP 49 48 48 TRP TRP A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 VAL 55 54 54 VAL VAL A . n A 1 56 ASN 56 55 55 ASN ASN A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 GLN 67 66 66 GLN GLN A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 ASN 70 69 69 ASN ASN A . n A 1 71 LEU 71 70 70 LEU LEU A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 PHE 84 83 83 PHE PHE A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 ILE 87 86 86 ILE ILE A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 SER 96 95 95 SER SER A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 SER 99 98 98 SER SER A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 THR 102 101 101 THR THR A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 HIS 109 108 108 HIS HIS A . n A 1 110 MET 110 109 109 MET MET A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 MET 113 112 112 MET MET A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 PRO 116 115 115 PRO PRO A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 ASP 119 118 118 ASP ASP A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 TYR 123 122 122 TYR TYR A . n A 1 124 GLY 124 123 123 GLY GLY A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 SER 129 128 128 SER SER A . n A 1 130 GLY 130 129 129 GLY GLY A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 PRO 132 131 131 PRO PRO A . n A 1 133 THR 133 132 132 THR THR A . n A 1 134 HIS 134 133 133 HIS HIS A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 THR 136 135 135 THR THR A . n A 1 137 MET 137 136 136 MET MET A . n A 1 138 MET 138 137 137 MET MET A . n A 1 139 TYR 139 138 138 TYR TYR A . n A 1 140 ASN 140 139 139 ASN ASN A . n A 1 141 PHE 141 140 140 PHE PHE A . n A 1 142 PRO 142 141 141 PRO PRO A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 LYS 144 143 143 LYS LYS A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 GLY 146 145 145 GLY GLY A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 CYS 148 147 147 CYS CYS A . n A 1 149 GLY 149 148 148 GLY GLY A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 VAL 152 151 151 VAL VAL A . n A 1 153 THR 153 152 152 THR THR A . n A 1 154 SER 154 153 153 SER SER A . n A 1 155 VAL 155 154 154 VAL VAL A . n A 1 156 GLY 156 155 155 GLY GLY A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 VAL 158 157 157 VAL VAL A . n A 1 159 ILE 159 158 158 ILE ILE A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 ILE 161 160 160 ILE ILE A . n A 1 162 HIS 162 161 161 HIS HIS A . n A 1 163 ILE 163 162 162 ILE ILE A . n A 1 164 GLY 164 163 163 GLY GLY A . n A 1 165 GLY 165 164 164 GLY GLY A . n A 1 166 ASN 166 165 165 ASN ASN A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 ARG 168 167 167 ARG ARG A . n A 1 169 GLN 169 168 168 GLN GLN A . n A 1 170 GLY 170 169 169 GLY GLY A . n A 1 171 PHE 171 170 170 PHE PHE A . n A 1 172 CYS 172 171 171 CYS CYS A . n A 1 173 ALA 173 172 172 ALA ALA A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 LYS 176 175 175 LYS LYS A . n A 1 177 ARG 177 176 176 ARG ARG A . n A 1 178 SER 178 177 177 SER SER A . n A 1 179 TYR 179 178 178 TYR TYR A . n A 1 180 PHE 180 179 179 PHE PHE A . n A 1 181 ALA 181 180 180 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5E9 1 201 1 5E9 109 A . C 3 HOH 1 301 38 HOH HOH A . C 3 HOH 2 302 65 HOH HOH A . C 3 HOH 3 303 82 HOH HOH A . C 3 HOH 4 304 55 HOH HOH A . C 3 HOH 5 305 56 HOH HOH A . C 3 HOH 6 306 48 HOH HOH A . C 3 HOH 7 307 32 HOH HOH A . C 3 HOH 8 308 28 HOH HOH A . C 3 HOH 9 309 12 HOH HOH A . C 3 HOH 10 310 72 HOH HOH A . C 3 HOH 11 311 73 HOH HOH A . C 3 HOH 12 312 64 HOH HOH A . C 3 HOH 13 313 7 HOH HOH A . C 3 HOH 14 314 81 HOH HOH A . C 3 HOH 15 315 44 HOH HOH A . C 3 HOH 16 316 29 HOH HOH A . C 3 HOH 17 317 66 HOH HOH A . C 3 HOH 18 318 21 HOH HOH A . C 3 HOH 19 319 83 HOH HOH A . C 3 HOH 20 320 22 HOH HOH A . C 3 HOH 21 321 46 HOH HOH A . C 3 HOH 22 322 40 HOH HOH A . C 3 HOH 23 323 70 HOH HOH A . C 3 HOH 24 324 78 HOH HOH A . C 3 HOH 25 325 61 HOH HOH A . C 3 HOH 26 326 34 HOH HOH A . C 3 HOH 27 327 5 HOH HOH A . C 3 HOH 28 328 11 HOH HOH A . C 3 HOH 29 329 67 HOH HOH A . C 3 HOH 30 330 26 HOH HOH A . C 3 HOH 31 331 84 HOH HOH A . C 3 HOH 32 332 19 HOH HOH A . C 3 HOH 33 333 71 HOH HOH A . C 3 HOH 34 334 1 HOH HOH A . C 3 HOH 35 335 50 HOH HOH A . C 3 HOH 36 336 85 HOH HOH A . C 3 HOH 37 337 4 HOH HOH A . C 3 HOH 38 338 62 HOH HOH A . C 3 HOH 39 339 16 HOH HOH A . C 3 HOH 40 340 74 HOH HOH A . C 3 HOH 41 341 31 HOH HOH A . C 3 HOH 42 342 76 HOH HOH A . C 3 HOH 43 343 69 HOH HOH A . C 3 HOH 44 344 51 HOH HOH A . C 3 HOH 45 345 57 HOH HOH A . C 3 HOH 46 346 75 HOH HOH A . C 3 HOH 47 347 14 HOH HOH A . C 3 HOH 48 348 59 HOH HOH A . C 3 HOH 49 349 20 HOH HOH A . C 3 HOH 50 350 63 HOH HOH A . C 3 HOH 51 351 30 HOH HOH A . C 3 HOH 52 352 49 HOH HOH A . C 3 HOH 53 353 13 HOH HOH A . C 3 HOH 54 354 36 HOH HOH A . C 3 HOH 55 355 2 HOH HOH A . C 3 HOH 56 356 10 HOH HOH A . C 3 HOH 57 357 77 HOH HOH A . C 3 HOH 58 358 45 HOH HOH A . C 3 HOH 59 359 80 HOH HOH A . C 3 HOH 60 360 79 HOH HOH A . C 3 HOH 61 361 8 HOH HOH A . C 3 HOH 62 362 37 HOH HOH A . C 3 HOH 63 363 43 HOH HOH A . C 3 HOH 64 364 53 HOH HOH A . C 3 HOH 65 365 39 HOH HOH A . C 3 HOH 66 366 41 HOH HOH A . C 3 HOH 67 367 9 HOH HOH A . C 3 HOH 68 368 24 HOH HOH A . C 3 HOH 69 369 17 HOH HOH A . C 3 HOH 70 370 58 HOH HOH A . C 3 HOH 71 371 15 HOH HOH A . C 3 HOH 72 372 6 HOH HOH A . C 3 HOH 73 373 54 HOH HOH A . C 3 HOH 74 374 23 HOH HOH A . C 3 HOH 75 375 87 HOH HOH A . C 3 HOH 76 376 68 HOH HOH A . C 3 HOH 77 377 86 HOH HOH A . C 3 HOH 78 378 25 HOH HOH A . C 3 HOH 79 379 18 HOH HOH A . C 3 HOH 80 380 3 HOH HOH A . C 3 HOH 81 381 47 HOH HOH A . C 3 HOH 82 382 27 HOH HOH A . C 3 HOH 83 383 60 HOH HOH A . C 3 HOH 84 384 52 HOH HOH A . C 3 HOH 85 385 33 HOH HOH A . C 3 HOH 86 386 35 HOH HOH A . C 3 HOH 87 387 42 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 328 ? C HOH . 2 1 A HOH 380 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-30 2 'Structure model' 1 1 2016-04-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 98 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 93 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASN _pdbx_validate_symm_contact.auth_seq_id_2 93 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_545 _pdbx_validate_symm_contact.dist 1.82 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH2 A ARG 16 ? ? 117.21 120.30 -3.09 0.50 N 2 1 CB A ASP 118 ? ? CG A ASP 118 ? ? OD1 A ASP 118 ? ? 124.55 118.30 6.25 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 32 ? ? 46.24 -118.93 2 1 GLU A 50 ? ? 52.25 -73.35 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ethyl (2Z,4S)-4-{[(2R,5S)-5-amino-2-(4-fluorobenzyl)-6-methyl-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate' 5E9 3 water HOH #