HEADER FLUORESCENT PROTEIN 12-SEP-15 5DPH TITLE SFGFP MUTANT - 149 P-CYANO-L-PHENYLALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: DH10B; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS GFP, UNNATURAL AMINO ACID, CYANOPHENYLALANINE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.B.DIPPEL,G.M.OLENGINSKI,N.MAURICI,M.T.LISKOV,S.H.BREWER, AUTHOR 2 C.M.PHILLIPS-PIRO REVDAT 6 15-NOV-23 5DPH 1 REMARK REVDAT 5 27-SEP-23 5DPH 1 LINK REVDAT 4 27-NOV-19 5DPH 1 REMARK REVDAT 3 25-APR-18 5DPH 1 JRNL REVDAT 2 20-SEP-17 5DPH 1 REMARK REVDAT 1 13-JAN-16 5DPH 0 JRNL AUTH A.B.DIPPEL,G.M.OLENGINSKI,N.MAURICI,M.T.LISKOV,S.H.BREWER, JRNL AUTH 2 C.M.PHILLIPS-PIRO JRNL TITL PROBING THE EFFECTIVENESS OF SPECTROSCOPIC REPORTER JRNL TITL 2 UNNATURAL AMINO ACIDS: A STRUCTURAL STUDY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 121 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 26894540 JRNL DOI 10.1107/S2059798315022858 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 81014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 4163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.7955 - 3.8501 0.95 3895 204 0.1135 0.1437 REMARK 3 2 3.8501 - 3.0583 0.95 3866 212 0.1237 0.1780 REMARK 3 3 3.0583 - 2.6723 0.94 3840 233 0.1598 0.2006 REMARK 3 4 2.6723 - 2.4283 0.95 3893 192 0.1790 0.2056 REMARK 3 5 2.4283 - 2.2544 0.95 3837 197 0.1989 0.2171 REMARK 3 6 2.2544 - 2.1216 0.95 3875 214 0.2099 0.2182 REMARK 3 7 2.1216 - 2.0154 0.95 3891 198 0.2219 0.2182 REMARK 3 8 2.0154 - 1.9277 0.94 3837 233 0.2306 0.2486 REMARK 3 9 1.9277 - 1.8536 0.95 3874 187 0.2390 0.2448 REMARK 3 10 1.8536 - 1.7896 0.94 3821 206 0.2527 0.2612 REMARK 3 11 1.7896 - 1.7337 0.96 3890 176 0.2757 0.2648 REMARK 3 12 1.7337 - 1.6842 0.95 3839 221 0.2728 0.2860 REMARK 3 13 1.6842 - 1.6398 0.95 3849 202 0.2785 0.2940 REMARK 3 14 1.6398 - 1.5998 0.94 3888 232 0.2867 0.3017 REMARK 3 15 1.5998 - 1.5635 0.94 3816 224 0.2933 0.2805 REMARK 3 16 1.5635 - 1.5302 0.95 3855 213 0.2920 0.3051 REMARK 3 17 1.5302 - 1.4996 0.95 3898 208 0.3128 0.3093 REMARK 3 18 1.4996 - 1.4713 0.94 3753 198 0.3049 0.3209 REMARK 3 19 1.4713 - 1.4450 0.92 3779 189 0.3185 0.3509 REMARK 3 20 1.4450 - 1.4205 0.88 3587 220 0.3298 0.3182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3757 REMARK 3 ANGLE : 1.245 5077 REMARK 3 CHIRALITY : 0.067 551 REMARK 3 PLANARITY : 0.005 660 REMARK 3 DIHEDRAL : 15.018 1373 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100. REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 36.90 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 21.90 REMARK 200 R MERGE FOR SHELL (I) : 1.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% PEG 4000, 0.21 REMARK 280 M MGCL2-6H2O, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.85000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 229.70000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.27500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 287.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 GLU A 222 CD OE1 OE2 REMARK 470 GLU B 222 CD OE1 OE2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG B 168 O HOH B 406 1.42 REMARK 500 HG1 THR B 50 O HOH B 408 1.55 REMARK 500 HH11 ARG B 122 O HOH B 416 1.56 REMARK 500 HZ2 LYS A 209 O HOH A 413 1.59 REMARK 500 O HOH B 475 O HOH B 657 1.90 REMARK 500 OD1 ASP A 36 O HOH A 401 1.92 REMARK 500 O HOH B 432 O HOH B 558 1.93 REMARK 500 O HOH B 621 O HOH B 666 1.93 REMARK 500 OD1 ASP A 197 O HOH A 402 1.95 REMARK 500 O HOH B 573 O HOH B 606 1.96 REMARK 500 O HOH B 607 O HOH B 627 1.96 REMARK 500 O HOH A 547 O HOH A 613 1.96 REMARK 500 O HOH A 559 O HOH A 563 1.98 REMARK 500 O HOH B 578 O HOH B 611 1.98 REMARK 500 O HOH A 475 O HOH A 653 1.98 REMARK 500 O HOH B 430 O HOH B 551 1.99 REMARK 500 O HOH B 589 O HOH B 679 1.99 REMARK 500 O HOH A 480 O HOH A 602 2.00 REMARK 500 O HOH B 565 O HOH B 602 2.01 REMARK 500 O HOH B 434 O HOH B 621 2.01 REMARK 500 O HOH B 403 O HOH B 435 2.01 REMARK 500 O HOH A 538 O HOH A 559 2.01 REMARK 500 O MET A 88 O HOH A 403 2.01 REMARK 500 OE2 GLU B 95 O HOH B 401 2.01 REMARK 500 O2 CO2 A 301 O HOH A 404 2.01 REMARK 500 OE2 GLU B 5 O HOH B 402 2.01 REMARK 500 O HOH B 631 O HOH B 676 2.01 REMARK 500 O HOH A 623 O HOH A 634 2.03 REMARK 500 O HOH B 415 O HOH B 590 2.03 REMARK 500 O HOH B 573 O HOH B 631 2.04 REMARK 500 O HOH B 579 O HOH B 609 2.04 REMARK 500 O HOH A 483 O HOH A 648 2.04 REMARK 500 OE1 GLU B 172 O HOH B 403 2.05 REMARK 500 O HOH B 434 O HOH B 484 2.05 REMARK 500 O HOH B 494 O HOH B 640 2.05 REMARK 500 O GLY B 4 O HOH B 404 2.05 REMARK 500 O HOH A 504 O HOH B 632 2.06 REMARK 500 O HOH B 598 O HOH B 626 2.06 REMARK 500 O HOH A 604 O HOH A 629 2.06 REMARK 500 O HOH A 581 O HOH B 615 2.07 REMARK 500 NH1 ARG A 30 O HOH A 405 2.07 REMARK 500 O THR B 230 O HOH B 405 2.07 REMARK 500 O HOH B 639 O HOH B 665 2.07 REMARK 500 NH1 ARG B 168 O HOH B 406 2.07 REMARK 500 O HOH A 417 O HOH A 574 2.08 REMARK 500 O HIS B 231 O HOH B 407 2.08 REMARK 500 O HOH B 561 O HOH B 571 2.08 REMARK 500 O HOH A 622 O HOH A 646 2.09 REMARK 500 O HOH B 416 O HOH B 480 2.09 REMARK 500 O HOH B 458 O HOH B 630 2.10 REMARK 500 REMARK 500 THIS ENTRY HAS 94 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 634 O HOH B 662 6755 1.99 REMARK 500 O HOH B 603 O HOH B 653 1455 2.02 REMARK 500 O HOH A 457 O HOH B 612 6765 2.06 REMARK 500 O HOH A 539 O HOH B 582 6755 2.06 REMARK 500 O HOH A 564 O HOH B 637 6755 2.07 REMARK 500 O HOH A 612 O HOH A 632 1665 2.07 REMARK 500 O HOH A 625 O HOH B 629 6755 2.10 REMARK 500 O HOH A 533 O HOH B 616 6765 2.14 REMARK 500 O HOH A 424 O HOH B 497 6755 2.16 REMARK 500 O HOH A 596 O HOH B 647 6765 2.17 REMARK 500 O HOH A 644 O HOH B 622 6655 2.17 REMARK 500 O HOH A 425 O HOH B 596 6765 2.17 REMARK 500 O HOH B 554 O HOH B 563 1455 2.18 REMARK 500 O HOH A 632 O HOH A 670 1445 2.18 REMARK 500 O HOH A 625 O HOH B 568 6755 2.18 REMARK 500 O HOH A 443 O HOH B 440 6765 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 136 -71.72 -83.46 REMARK 500 HIS A 139 65.29 37.92 REMARK 500 VAL A 193 159.00 45.07 REMARK 500 ASN A 212 54.88 -102.05 REMARK 500 THR B 9 92.53 -65.72 REMARK 500 ASP B 36 77.26 -102.67 REMARK 500 HIS B 81 13.89 -141.60 REMARK 500 ASP B 103 -158.52 -158.04 REMARK 500 LYS B 158 22.22 -143.24 REMARK 500 GLU B 172 1.19 -67.71 REMARK 500 ASP B 190 14.29 -147.09 REMARK 500 PRO B 192 -107.46 -80.25 REMARK 500 VAL B 193 118.67 52.23 REMARK 500 HIS B 199 -173.11 -172.14 REMARK 500 ALA B 227 -177.52 -176.54 REMARK 500 HIS B 231 90.59 144.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 678 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 688 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 689 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 446 O REMARK 620 2 HOH A 654 O 108.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 520 O REMARK 620 2 HOH B 542 O 84.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 519 O REMARK 620 2 HOH B 530 O 83.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO2 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DPG RELATED DB: PDB REMARK 900 RELATED ID: 5DPI RELATED DB: PDB REMARK 900 RELATED ID: 5DPJ RELATED DB: PDB DBREF1 5DPH A 1 238 UNP A0A059PIQ0_AEQVI DBREF2 5DPH A A0A059PIQ0 1 238 DBREF1 5DPH B 1 238 UNP A0A059PIQ0_AEQVI DBREF2 5DPH B A0A059PIQ0 1 238 SEQADV 5DPH MET A 0 UNP A0A059PIQ INITIATING METHIONINE SEQADV 5DPH VAL A 1 UNP A0A059PIQ MET 1 ENGINEERED MUTATION SEQADV 5DPH SER A 2 UNP A0A059PIQ ARG 2 ENGINEERED MUTATION SEQADV 5DPH ARG A 30 UNP A0A059PIQ SER 30 ENGINEERED MUTATION SEQADV 5DPH CRO A 66 UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5DPH CRO A 66 UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5DPH CRO A 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5DPH SER A 72 UNP A0A059PIQ ALA 72 ENGINEERED MUTATION SEQADV 5DPH ARG A 80 UNP A0A059PIQ GLN 80 ENGINEERED MUTATION SEQADV 5DPH 4CF A 149 UNP A0A059PIQ ASN 149 ENGINEERED MUTATION SEQADV 5DPH VAL A 206 UNP A0A059PIQ ALA 206 ENGINEERED MUTATION SEQADV 5DPH MET B 0 UNP A0A059PIQ INITIATING METHIONINE SEQADV 5DPH VAL B 1 UNP A0A059PIQ MET 1 ENGINEERED MUTATION SEQADV 5DPH SER B 2 UNP A0A059PIQ ARG 2 ENGINEERED MUTATION SEQADV 5DPH ARG B 30 UNP A0A059PIQ SER 30 ENGINEERED MUTATION SEQADV 5DPH CRO B 66 UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5DPH CRO B 66 UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5DPH CRO B 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5DPH SER B 72 UNP A0A059PIQ ALA 72 ENGINEERED MUTATION SEQADV 5DPH ARG B 80 UNP A0A059PIQ GLN 80 ENGINEERED MUTATION SEQADV 5DPH 4CF B 149 UNP A0A059PIQ ASN 149 ENGINEERED MUTATION SEQADV 5DPH VAL B 206 UNP A0A059PIQ ALA 206 ENGINEERED MUTATION SEQRES 1 A 237 MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 237 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 237 LYS PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 237 ASN GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 A 237 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 A 237 CRO VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 237 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 237 VAL GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR SEQRES 9 A 237 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 237 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 237 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 237 PHE ASN SER HIS 4CF VAL TYR ILE THR ALA ASP LYS GLN SEQRES 13 A 237 LYS ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN SEQRES 14 A 237 VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 A 237 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 A 237 ASP ASN HIS TYR LEU SER THR GLN SER VAL LEU SER LYS SEQRES 17 A 237 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 237 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 A 237 LEU TYR LYS SEQRES 1 B 237 MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 B 237 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 B 237 LYS PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 B 237 ASN GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 B 237 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 B 237 CRO VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 B 237 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 B 237 VAL GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR SEQRES 9 B 237 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 B 237 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 B 237 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 B 237 PHE ASN SER HIS 4CF VAL TYR ILE THR ALA ASP LYS GLN SEQRES 13 B 237 LYS ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN SEQRES 14 B 237 VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 B 237 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 B 237 ASP ASN HIS TYR LEU SER THR GLN SER VAL LEU SER LYS SEQRES 17 B 237 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 B 237 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 B 237 LEU TYR LYS MODRES 5DPH CRO A 66 GLY CHROMOPHORE MODRES 5DPH CRO B 66 GLY CHROMOPHORE HET CRO A 66 22 HET 4CF A 149 13 HET CRO B 66 22 HET 4CF B 149 13 HET CO2 A 301 3 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET MG A 306 1 HET CO2 B 301 3 HET MG B 302 1 HET MG B 303 1 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM 4CF 4-CYANO-L-PHENYLALANINE HETNAM CO2 CARBON DIOXIDE HETNAM MG MAGNESIUM ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 1 4CF 2(C10 H10 N2 O2) FORMUL 3 CO2 2(C O2) FORMUL 4 MG 7(MG 2+) FORMUL 12 HOH *567(H2 O) HELIX 1 AA1 GLY A 4 THR A 9 5 6 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 LYS A 79 5 5 HELIX 5 AA5 PHE A 84 MET A 88 5 5 HELIX 6 AA6 GLY B 4 PHE B 8 5 5 HELIX 7 AA7 PRO B 56 VAL B 61 5 6 HELIX 8 AA8 VAL B 68 SER B 72 5 5 HELIX 9 AA9 PRO B 75 HIS B 81 5 7 HELIX 10 AB1 ASP B 82 ALA B 87 1 6 HELIX 11 AB2 LYS B 156 ASN B 159 5 4 HELIX 12 AB3 MET B 233 TYR B 237 5 5 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O GLY A 33 N ILE A 14 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O ILE A 47 N ARG A 30 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N GLN A 204 O PHE A 223 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 203 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 184 SHEET 10 AA112 THR A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 12 VAL A 22 1 N GLU A 17 O ASN A 121 SHEET 1 AA212 VAL B 11 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O VAL B 29 N LEU B 18 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O ILE B 47 N ARG B 30 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 208 O VAL B 219 SHEET 6 AA212 HIS B 148 ASP B 155 -1 N VAL B 150 O LEU B 201 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O LYS B 162 N THR B 153 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA212 THR B 105 GLU B 115 -1 O VAL B 112 N TYR B 92 SHEET 11 AA212 THR B 118 ILE B 128 -1 O GLU B 124 N ARG B 109 SHEET 12 AA212 VAL B 11 VAL B 22 1 N ASP B 21 O GLY B 127 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.32 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.55 LINK C HIS A 148 N 4CF A 149 1555 1555 1.33 LINK C 4CF A 149 N VAL A 150 1555 1555 1.33 LINK C LEU B 64 N1 CRO B 66 1555 1555 1.33 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.51 LINK C HIS B 148 N 4CF B 149 1555 1555 1.33 LINK C 4CF B 149 N VAL B 150 1555 1555 1.33 LINK MG MG A 305 O HOH A 446 1555 1555 2.88 LINK MG MG A 305 O HOH A 654 1555 1555 1.90 LINK MG MG A 306 O HOH A 520 1555 1555 2.19 LINK MG MG A 306 O HOH B 542 1555 1555 2.03 LINK MG MG B 302 O HOH B 519 1555 1555 2.75 LINK MG MG B 302 O HOH B 530 1555 1555 3.00 CISPEP 1 MET A 88 PRO A 89 0 3.22 CISPEP 2 MET B 88 PRO B 89 0 0.66 SITE 1 AC1 5 CRO A 66 SER A 205 GLU A 222 VAL A 224 SITE 2 AC1 5 HOH A 404 SITE 1 AC2 2 VAL A 29 ASP B 129 SITE 1 AC3 1 LYS A 107 SITE 1 AC4 1 VAL B 29 SITE 1 AC5 4 HIS A 148 4CF A 149 HOH A 446 HOH A 654 SITE 1 AC6 4 PRO A 75 ASP A 76 HOH A 520 HOH B 542 SITE 1 AC7 7 LEU B 42 CRO B 66 GLU B 222 VAL B 224 SITE 2 AC7 7 HOH B 448 HOH B 456 HOH B 506 SITE 1 AC8 3 TRP B 57 HOH B 519 HOH B 530 CRYST1 47.270 47.270 344.550 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021155 0.012214 0.000000 0.00000 SCALE2 0.000000 0.024428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002902 0.00000