HEADER    TRANSFERASE/DNA                         14-SEP-15   5DQG              
TITLE     CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING DAMPNPP       
TITLE    2 OPPOSITE O4-ETHYLTHYMIDINE                                           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE ETA;                                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 1-432;                                        
COMPND   5 SYNONYM: RAD30 HOMOLOG A,XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN; 
COMPND   6 EC: 2.7.7.7;                                                         
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA (5'-D(*CP*AP*TP*(5EJ)P*AP*TP*GP*AP*CP*GP*CP*T)-3');    
COMPND  10 CHAIN: T;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3');                    
COMPND  14 CHAIN: P;                                                            
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: POLH, RAD30, RAD30A, XPV;                                      
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 SYNTHETIC: YES;                                                      
SOURCE  10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  11 ORGANISM_TAXID: 32630;                                               
SOURCE  12 OTHER_DETAILS: CHEMICALLY SYNTHESIZED;                               
SOURCE  13 MOL_ID: 3;                                                           
SOURCE  14 SYNTHETIC: YES;                                                      
SOURCE  15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  16 ORGANISM_TAXID: 32630;                                               
SOURCE  17 OTHER_DETAILS: CHEMICALLY SYNTHESIZED                                
KEYWDS    CATALYTIC DOMAIN, DNA DAMAGE, DNA-DIRECTED DNA POLYMERASE, ADENOSINE  
KEYWDS   2 TRIPHOSPHATE, Y-FAMILY POLYMERASE, TRANS-LESION SYNTHESIS (TLS), DNA 
KEYWDS   3 BINDING, O4-ALKYLTHYMIDINE, O4-ETHYLTHYMIDINE, TRANSFERASE-DNA       
KEYWDS   4 COMPLEX                                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.PATRA,D.K.OFLAHERTY,M.EGLI                                          
REVDAT   4   27-SEP-23 5DQG    1       LINK                                     
REVDAT   3   16-JAN-19 5DQG    1       SOURCE                                   
REVDAT   2   18-APR-18 5DQG    1       JRNL   REMARK                            
REVDAT   1   10-AUG-16 5DQG    0                                                
JRNL        AUTH   D.K.O'FLAHERTY,A.PATRA,Y.SU,F.P.GUENGERICH,M.EGLI,C.J.WILDS  
JRNL        TITL   LESION ORIENTATION OFO4-ALKYLTHYMIDINE INFLUENCES            
JRNL        TITL 2 REPLICATION BY HUMAN DNA POLYMERASEETA.                      
JRNL        REF    CHEM SCI                      V.   7  4896 2016              
JRNL        REFN                   ISSN 2041-6520                               
JRNL        PMID   27574558                                                     
JRNL        DOI    10.1039/C6SC00666C                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.29 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0131                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 59.21                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 100.0                          
REMARK   3   NUMBER OF REFLECTIONS             : 19497                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.178                           
REMARK   3   R VALUE            (WORKING SET) : 0.176                           
REMARK   3   FREE R VALUE                     : 0.227                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.200                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1071                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.29                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.35                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1423                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 100.0                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.1770                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 78                           
REMARK   3   BIN FREE R VALUE                    : 0.2610                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3366                                    
REMARK   3   NUCLEIC ACID ATOMS       : 389                                     
REMARK   3   HETEROGEN ATOMS          : 38                                      
REMARK   3   SOLVENT ATOMS            : 212                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 31.07                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.45000                                             
REMARK   3    B22 (A**2) : -0.45000                                             
REMARK   3    B33 (A**2) : 1.45000                                              
REMARK   3    B12 (A**2) : -0.22000                                             
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.441         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.240         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.183         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.528         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.943                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.919                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3895 ; 0.012 ; 0.018       
REMARK   3   BOND LENGTHS OTHERS               (A):  3579 ; 0.002 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  5339 ; 1.422 ; 1.887       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  8246 ; 1.090 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   428 ; 5.927 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   153 ;39.654 ;23.987       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   628 ;15.014 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    28 ;17.623 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   580 ; 0.073 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4114 ; 0.006 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):   875 ; 0.002 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1718 ; 2.169 ; 2.875       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  1717 ; 2.161 ; 2.874       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2144 ; 3.362 ; 4.300       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  2145 ; 3.361 ; 4.302       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2177 ; 2.860 ; 3.314       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  2177 ; 2.860 ; 3.314       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  3196 ; 4.407 ; 4.870       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2): 16488 ; 7.230 ;27.963       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2): 16485 ; 7.231 ;27.964       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 5DQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-15.                  
REMARK 100 THE DEPOSITION ID IS D_1000213446.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 15-AUG-14                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 21-ID-G                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97856                            
REMARK 200  MONOCHROMATOR                  : C(111)                             
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 300 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 20600                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.290                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 59.210                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 5.600                              
REMARK 200  R MERGE                    (I) : 0.15500                            
REMARK 200  R SYM                      (I) : 0.15500                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 8.4000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.35                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 5.60                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.59500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.200                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 4O3N                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 41.79                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 5.5, 5MM MAGNESIUM          
REMARK 280  CHLORIDE, 22% PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP,          
REMARK 280  TEMPERATURE 291K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z+1/3                                            
REMARK 290       3555   -X+Y,-X,Z+2/3                                           
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+5/6                                            
REMARK 290       6555   X-Y,X,Z+1/6                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       27.33900            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       54.67800            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       41.00850            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       68.34750            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       13.66950            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     THR A   155                                                      
REMARK 465     THR A   156                                                      
REMARK 465     ALA A   157                                                      
REMARK 465     GLU A   158                                                      
REMARK 465     GLU A   159                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470      DC T   1    O5'  C5'  C4'  O4'  C3'  C2'  C1'                   
REMARK 470      DC T   1    N1   C2   O2   N3   C4   N4   C5                    
REMARK 470      DC T   1    C6                                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DT T   3   O3'   5EJ T   4   P       0.093                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    CYS A  16       63.37     22.31                                   
REMARK 500    TYR A  39       76.44     70.48                                   
REMARK 500    LYS A  40       -6.97    -57.91                                   
REMARK 500    SER A  62      -44.48     82.09                                   
REMARK 500    SER A 217     -155.70   -155.92                                   
REMARK 500    SER A 257      -13.37     90.30                                   
REMARK 500    PRO A 312       89.11    -69.91                                   
REMARK 500    LEU A 381      135.28   -171.34                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 502  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD2                                                    
REMARK 620 2 MET A  14   O    89.6                                              
REMARK 620 3 ASP A 115   OD2 108.4  93.5                                        
REMARK 620 4 DZ4 A 501   O2A 108.4 162.1  81.2                                  
REMARK 620 5 DZ4 A 501   O2B 169.3  89.4  82.2  72.9                            
REMARK 620 6 DZ4 A 501   O3G  84.4  96.8 163.6  85.2  85.1                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A 503  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A  13   OD1                                                    
REMARK 620 2 ASP A 115   OD1  97.4                                              
REMARK 620 3 GLU A 116   OE1  83.1  89.6                                        
REMARK 620 4 DZ4 A 501   O2A 104.4  92.8 171.8                                  
REMARK 620 5 HOH A 690   O    89.7 172.8  92.5  84.3                            
REMARK 620 6  DT P   8   O3' 161.5  84.6  78.4  93.9  89.0                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue DZ4 A 501                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 5DQH   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5DQI   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5DLF   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 5DLG   RELATED DB: PDB                                   
DBREF  5DQG A    1   432  UNP    Q9Y253   POLH_HUMAN       1    432             
DBREF  5DQG T    1    12  PDB    5DQG     5DQG             1     12             
DBREF  5DQG P    1     8  PDB    5DQG     5DQG             1      8             
SEQADV 5DQG GLY A   -2  UNP  Q9Y253              EXPRESSION TAG                 
SEQADV 5DQG PRO A   -1  UNP  Q9Y253              EXPRESSION TAG                 
SEQADV 5DQG HIS A    0  UNP  Q9Y253              EXPRESSION TAG                 
SEQRES   1 A  435  GLY PRO HIS MET ALA THR GLY GLN ASP ARG VAL VAL ALA          
SEQRES   2 A  435  LEU VAL ASP MET ASP CYS PHE PHE VAL GLN VAL GLU GLN          
SEQRES   3 A  435  ARG GLN ASN PRO HIS LEU ARG ASN LYS PRO CYS ALA VAL          
SEQRES   4 A  435  VAL GLN TYR LYS SER TRP LYS GLY GLY GLY ILE ILE ALA          
SEQRES   5 A  435  VAL SER TYR GLU ALA ARG ALA PHE GLY VAL THR ARG SER          
SEQRES   6 A  435  MET TRP ALA ASP ASP ALA LYS LYS LEU CYS PRO ASP LEU          
SEQRES   7 A  435  LEU LEU ALA GLN VAL ARG GLU SER ARG GLY LYS ALA ASN          
SEQRES   8 A  435  LEU THR LYS TYR ARG GLU ALA SER VAL GLU VAL MET GLU          
SEQRES   9 A  435  ILE MET SER ARG PHE ALA VAL ILE GLU ARG ALA SER ILE          
SEQRES  10 A  435  ASP GLU ALA TYR VAL ASP LEU THR SER ALA VAL GLN GLU          
SEQRES  11 A  435  ARG LEU GLN LYS LEU GLN GLY GLN PRO ILE SER ALA ASP          
SEQRES  12 A  435  LEU LEU PRO SER THR TYR ILE GLU GLY LEU PRO GLN GLY          
SEQRES  13 A  435  PRO THR THR ALA GLU GLU THR VAL GLN LYS GLU GLY MET          
SEQRES  14 A  435  ARG LYS GLN GLY LEU PHE GLN TRP LEU ASP SER LEU GLN          
SEQRES  15 A  435  ILE ASP ASN LEU THR SER PRO ASP LEU GLN LEU THR VAL          
SEQRES  16 A  435  GLY ALA VAL ILE VAL GLU GLU MET ARG ALA ALA ILE GLU          
SEQRES  17 A  435  ARG GLU THR GLY PHE GLN CYS SER ALA GLY ILE SER HIS          
SEQRES  18 A  435  ASN LYS VAL LEU ALA LYS LEU ALA CYS GLY LEU ASN LYS          
SEQRES  19 A  435  PRO ASN ARG GLN THR LEU VAL SER HIS GLY SER VAL PRO          
SEQRES  20 A  435  GLN LEU PHE SER GLN MET PRO ILE ARG LYS ILE ARG SER          
SEQRES  21 A  435  LEU GLY GLY LYS LEU GLY ALA SER VAL ILE GLU ILE LEU          
SEQRES  22 A  435  GLY ILE GLU TYR MET GLY GLU LEU THR GLN PHE THR GLU          
SEQRES  23 A  435  SER GLN LEU GLN SER HIS PHE GLY GLU LYS ASN GLY SER          
SEQRES  24 A  435  TRP LEU TYR ALA MET CYS ARG GLY ILE GLU HIS ASP PRO          
SEQRES  25 A  435  VAL LYS PRO ARG GLN LEU PRO LYS THR ILE GLY CYS SER          
SEQRES  26 A  435  LYS ASN PHE PRO GLY LYS THR ALA LEU ALA THR ARG GLU          
SEQRES  27 A  435  GLN VAL GLN TRP TRP LEU LEU GLN LEU ALA GLN GLU LEU          
SEQRES  28 A  435  GLU GLU ARG LEU THR LYS ASP ARG ASN ASP ASN ASP ARG          
SEQRES  29 A  435  VAL ALA THR GLN LEU VAL VAL SER ILE ARG VAL GLN GLY          
SEQRES  30 A  435  ASP LYS ARG LEU SER SER LEU ARG ARG CYS CYS ALA LEU          
SEQRES  31 A  435  THR ARG TYR ASP ALA HIS LYS MET SER HIS ASP ALA PHE          
SEQRES  32 A  435  THR VAL ILE LYS ASN CYS ASN THR SER GLY ILE GLN THR          
SEQRES  33 A  435  GLU TRP SER PRO PRO LEU THR MET LEU PHE LEU CYS ALA          
SEQRES  34 A  435  THR LYS PHE SER ALA SER                                      
SEQRES   1 T   12   DC  DA  DT 5EJ  DA  DT  DG  DA  DC  DG  DC  DT              
SEQRES   1 P    8   DA  DG  DC  DG  DT  DC  DA  DT                              
HET    5EJ  T   4      22                                                       
HET    DZ4  A 501      30                                                       
HET     MG  A 502       1                                                       
HET     MG  A 503       1                                                       
HET    GOL  A 504       6                                                       
HETNAM     5EJ 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-                         
HETNAM   2 5EJ  PENTOFURANOSYL)-4-ETHOXY-5-METHYLPYRIMIDIN-2(1H)-ONE            
HETNAM     DZ4 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)            
HETNAM   2 DZ4  PHOSPHORYL]AMINO}PHOSPHORYL]ADENOSINE                           
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   2  5EJ    C12 H19 N2 O8 P                                              
FORMUL   4  DZ4    C10 H17 N6 O11 P3                                            
FORMUL   5   MG    2(MG 2+)                                                     
FORMUL   7  GOL    C3 H8 O3                                                     
FORMUL   8  HOH   *212(H2 O)                                                    
HELIX    1 AA1 CYS A   16  ASN A   26  1                                  11    
HELIX    2 AA2 PRO A   27  ARG A   30  5                                   4    
HELIX    3 AA3 SER A   51  ALA A   56  1                                   6    
HELIX    4 AA4 TRP A   64  CYS A   72  1                                   9    
HELIX    5 AA5 LEU A   89  ARG A  105  1                                  17    
HELIX    6 AA6 LEU A  121  GLN A  133  1                                  13    
HELIX    7 AA7 SER A  138  LEU A  142  5                                   5    
HELIX    8 AA8 GLN A  162  SER A  177  1                                  16    
HELIX    9 AA9 SER A  185  GLY A  209  1                                  25    
HELIX   10 AB1 ASN A  219  ASN A  230  1                                  12    
HELIX   11 AB2 SER A  239  GLY A  241  5                                   3    
HELIX   12 AB3 SER A  242  GLN A  249  1                                   8    
HELIX   13 AB4 MET A  250  ILE A  255  5                                   6    
HELIX   14 AB5 GLY A  260  GLY A  271  1                                  12    
HELIX   15 AB6 TYR A  274  PHE A  281  5                                   8    
HELIX   16 AB7 THR A  282  GLY A  291  1                                  10    
HELIX   17 AB8 GLY A  291  CYS A  302  1                                  12    
HELIX   18 AB9 PRO A  326  ALA A  330  5                                   5    
HELIX   19 AC1 ARG A  334  ASP A  360  1                                  27    
HELIX   20 AC2 ASP A  391  LYS A  404  1                                  14    
HELIX   21 AC3 ASN A  405  ASN A  407  5                                   3    
SHEET    1 AA1 6 ILE A 109  SER A 113  0                                        
SHEET    2 AA1 6 GLU A 116  ASP A 120 -1  O  GLU A 116   N  ALA A 112           
SHEET    3 AA1 6 VAL A   9  MET A  14 -1  N  ALA A  10   O  VAL A 119           
SHEET    4 AA1 6 CYS A 212  SER A 217 -1  O  SER A 217   N  VAL A   9           
SHEET    5 AA1 6 GLN A 235  LEU A 237  1  O  THR A 236   N  ALA A 214           
SHEET    6 AA1 6 THR A 145  ILE A 147  1  N  TYR A 146   O  LEU A 237           
SHEET    1 AA2 3 GLY A  46  VAL A  50  0                                        
SHEET    2 AA2 3 CYS A  34  GLN A  38 -1  N  GLN A  38   O  GLY A  46           
SHEET    3 AA2 3 LEU A  76  GLN A  79  1  O  ALA A  78   N  VAL A  37           
SHEET    1 AA3 2 GLU A  82  SER A  83  0                                        
SHEET    2 AA3 2 LYS A  86  ALA A  87 -1  O  LYS A  86   N  SER A  83           
SHEET    1 AA4 3 ILE A 319  ASN A 324  0                                        
SHEET    2 AA4 3 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3 AA4 3 LEU A 331  THR A 333 -1  N  ALA A 332   O  TRP A 415           
SHEET    1 AA5 4 ILE A 319  ASN A 324  0                                        
SHEET    2 AA5 4 GLU A 414  ALA A 431 -1  O  ALA A 426   N  ILE A 319           
SHEET    3 AA5 4 ARG A 361  VAL A 372 -1  N  VAL A 367   O  CYS A 425           
SHEET    4 AA5 4 LEU A 381  ALA A 386 -1  O  ARG A 383   N  VAL A 368           
LINK         O3'  DT T   3                 P   5EJ T   4     1555   1555  1.70  
LINK         O3' 5EJ T   4                 P    DA T   5     1555   1555  1.66  
LINK         OD2 ASP A  13                MG    MG A 502     1555   1555  1.99  
LINK         OD1 ASP A  13                MG    MG A 503     1555   1555  2.02  
LINK         O   MET A  14                MG    MG A 502     1555   1555  2.18  
LINK         OD2 ASP A 115                MG    MG A 502     1555   1555  2.06  
LINK         OD1 ASP A 115                MG    MG A 503     1555   1555  2.21  
LINK         OE1 GLU A 116                MG    MG A 503     1555   1555  2.17  
LINK         O2A DZ4 A 501                MG    MG A 502     1555   1555  2.24  
LINK         O2B DZ4 A 501                MG    MG A 502     1555   1555  2.13  
LINK         O3G DZ4 A 501                MG    MG A 502     1555   1555  2.02  
LINK         O2A DZ4 A 501                MG    MG A 503     1555   1555  2.19  
LINK        MG    MG A 503                 O   HOH A 690     1555   1555  2.02  
LINK        MG    MG A 503                 O3'  DT P   8     1555   1555  2.26  
CISPEP   1 LEU A  150    PRO A  151          0         5.18                     
CISPEP   2 LYS A  231    PRO A  232          0        -0.20                     
CISPEP   3 SER A  416    PRO A  417          0        -4.68                     
SITE     1 AC1 23 ASP A  13  MET A  14  ASP A  15  CYS A  16                    
SITE     2 AC1 23 PHE A  17  PHE A  18  ILE A  48  ALA A  49                    
SITE     3 AC1 23 TYR A  52  ARG A  55  ARG A  61  ASP A 115                    
SITE     4 AC1 23 LYS A 231   MG A 502   MG A 503  HOH A 618                    
SITE     5 AC1 23 HOH A 640  HOH A 690  HOH A 698  HOH A 702                    
SITE     6 AC1 23  DT P   8   DT T   3  5EJ T   4                               
SITE     1 AC2  5 ASP A  13  MET A  14  ASP A 115  DZ4 A 501                    
SITE     2 AC2  5  MG A 503                                                     
SITE     1 AC3  7 ASP A  13  ASP A 115  GLU A 116  DZ4 A 501                    
SITE     2 AC3  7  MG A 502  HOH A 690   DT P   8                               
SITE     1 AC4  9 ARG A  24  PRO A 244  PHE A 247  SER A 248                    
SITE     2 AC4  9 GLY A 276  GLU A 277  HOH A 610  HOH A 645                    
SITE     3 AC4  9 HOH A 683                                                     
CRYST1   98.820   98.820   82.017  90.00  90.00 120.00 P 61          6          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010119  0.005842  0.000000        0.00000                         
SCALE2      0.000000  0.011685  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012193        0.00000