HEADER OXIDOREDUCTASE 15-SEP-15 5DQP TITLE EDTA MONOOXYGENASE (EMOA) FROM CHELATIVORANS SP. BNC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EDTA MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EDTA-DEGRADING BACTERIUM BNC1; SOURCE 3 ORGANISM_TAXID: 85561; SOURCE 4 GENE: EMOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS MONOOXYGENASE, BIOREMEDIATION, EDTA DEGRADATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.JUN,B.YOUN,L.XUN,C.KANG,K.M.LEWIS REVDAT 3 27-SEP-23 5DQP 1 JRNL REMARK REVDAT 2 22-JUN-16 5DQP 1 JRNL REVDAT 1 16-MAR-16 5DQP 0 JRNL AUTH S.Y.JUN,K.M.LEWIS,B.YOUN,L.XUN,C.KANG JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF EDTA JRNL TITL 2 MONOOXYGENASE AND ITS PHYSICAL INTERACTION WITH A PARTNER JRNL TITL 3 FLAVIN REDUCTASE. JRNL REF MOL.MICROBIOL. V. 100 989 2016 JRNL REFN ESSN 1365-2958 JRNL PMID 26928990 JRNL DOI 10.1111/MMI.13363 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 56296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.530 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0310 - 5.1700 0.99 4221 155 0.1916 0.2378 REMARK 3 2 5.1700 - 4.1045 0.99 3978 143 0.1605 0.2038 REMARK 3 3 4.1045 - 3.5859 0.99 3907 144 0.1628 0.2014 REMARK 3 4 3.5859 - 3.2582 0.99 3857 143 0.1807 0.2093 REMARK 3 5 3.2582 - 3.0247 0.99 3868 141 0.1959 0.2203 REMARK 3 6 3.0247 - 2.8464 0.99 3871 143 0.1968 0.2526 REMARK 3 7 2.8464 - 2.7038 0.99 3832 141 0.2031 0.2684 REMARK 3 8 2.7038 - 2.5862 1.00 3840 142 0.2058 0.2404 REMARK 3 9 2.5862 - 2.4866 1.00 3848 140 0.2052 0.2392 REMARK 3 10 2.4866 - 2.4008 1.00 3845 141 0.2085 0.2676 REMARK 3 11 2.4008 - 2.3257 1.00 3829 138 0.2064 0.2692 REMARK 3 12 2.3257 - 2.2593 1.00 3859 142 0.2192 0.2778 REMARK 3 13 2.2593 - 2.1998 1.00 3801 138 0.2292 0.2986 REMARK 3 14 2.1998 - 2.1461 0.98 3751 138 0.2347 0.3123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6694 REMARK 3 ANGLE : 0.973 9117 REMARK 3 CHIRALITY : 0.056 997 REMARK 3 PLANARITY : 0.007 1208 REMARK 3 DIHEDRAL : 17.417 4029 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.146 REMARK 200 RESOLUTION RANGE LOW (A) : 45.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.19100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 1.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 2% (W/V) PEG 400, REMARK 280 AND 1.75 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.35200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 197.02800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.67600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 131.35200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.67600 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 197.02800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 834 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 901 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 908 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 919 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 293 REMARK 465 GLY B 304 REMARK 465 ILE B 305 REMARK 465 ASP B 306 REMARK 465 LEU B 307 REMARK 465 GLU B 308 REMARK 465 ARG B 309 REMARK 465 ILE B 310 REMARK 465 ASN B 311 REMARK 465 VAL B 312 REMARK 465 ASP B 313 REMARK 465 GLN B 314 REMARK 465 GLU B 326 REMARK 465 SER B 327 REMARK 465 ALA B 328 REMARK 465 LYS B 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ASP B 290 CG OD1 OD2 REMARK 470 LYS B 319 CG CD CE NZ REMARK 470 ASN B 322 CG OD1 ND2 REMARK 470 LEU B 346 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 824 O HOH A 904 1.87 REMARK 500 O HOH B 736 O HOH B 747 1.89 REMARK 500 OD1 ASP A 34 O HOH A 601 1.89 REMARK 500 O HOH A 814 O HOH A 885 1.89 REMARK 500 O HOH B 649 O HOH B 674 1.90 REMARK 500 O HOH B 666 O HOH B 728 1.91 REMARK 500 O HOH B 674 O HOH B 682 1.94 REMARK 500 O HOH B 739 O HOH B 753 1.94 REMARK 500 OD1 ASP A 339 O HOH A 602 1.95 REMARK 500 O HOH B 740 O HOH B 757 1.95 REMARK 500 O HOH A 621 O HOH A 858 2.00 REMARK 500 N VAL B 315 O HOH B 501 2.01 REMARK 500 OD1 ASP B 34 O HOH B 502 2.03 REMARK 500 O HOH A 835 O HOH A 876 2.03 REMARK 500 O HOH B 655 O HOH B 736 2.03 REMARK 500 OD2 ASP B 367 O HOH B 503 2.03 REMARK 500 O HOH A 782 O HOH A 893 2.04 REMARK 500 O HOH B 702 O HOH B 760 2.05 REMARK 500 OE1 GLU B 246 O HOH B 504 2.05 REMARK 500 O HOH A 774 O HOH A 855 2.05 REMARK 500 O GLY B 288 O HOH B 505 2.07 REMARK 500 OE1 GLN A 254 O HOH A 603 2.08 REMARK 500 NZ LYS B 190 O HOH B 506 2.08 REMARK 500 O PRO A 428 O HOH A 604 2.08 REMARK 500 O HOH A 869 O HOH A 883 2.08 REMARK 500 OD1 ASN A 427 O HOH A 605 2.09 REMARK 500 OE2 GLU A 148 O HOH A 606 2.10 REMARK 500 O HOH B 681 O HOH B 690 2.13 REMARK 500 OE1 GLU A 36 O HOH A 607 2.13 REMARK 500 OE2 GLU B 297 O HOH B 507 2.14 REMARK 500 OE1 GLU A 318 O HOH A 608 2.14 REMARK 500 O HOH B 762 O HOH B 763 2.16 REMARK 500 O HOH A 863 O HOH A 870 2.17 REMARK 500 O HOH A 840 O HOH A 905 2.17 REMARK 500 NH1 ARG A 242 O HOH A 609 2.17 REMARK 500 NH1 ARG B 221 O HOH B 508 2.17 REMARK 500 NE ARG A 406 O HOH A 610 2.18 REMARK 500 O HOH B 528 O HOH B 590 2.19 REMARK 500 O HOH A 860 O HOH A 887 2.19 REMARK 500 OE2 GLU A 24 O HOH A 611 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 769 O HOH B 506 5655 1.57 REMARK 500 O HOH A 845 O HOH B 690 7365 1.86 REMARK 500 O HOH A 716 O HOH B 665 7375 1.93 REMARK 500 O HOH A 790 O HOH B 721 7375 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 166 C PRO A 167 N 0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 -130.35 54.89 REMARK 500 PRO A 63 44.41 -86.70 REMARK 500 ASP A 88 -59.55 76.32 REMARK 500 ASN A 199 33.12 -96.63 REMARK 500 SER B 14 -129.27 51.08 REMARK 500 PRO B 63 45.50 -80.79 REMARK 500 ASP B 88 -56.89 73.98 REMARK 500 GLU B 318 -9.13 -59.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 762 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 763 DISTANCE = 6.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 DBREF 5DQP A 1 430 UNP Q9F9T3 Q9F9T3_9PROT 1 430 DBREF 5DQP B 1 430 UNP Q9F9T3 Q9F9T3_9PROT 1 430 SEQRES 1 A 430 MET ARG LYS ARG ARG MET TYR LEU VAL SER TRP LEU ASN SEQRES 2 A 430 SER SER GLY VAL LEU PRO ASN SER TRP ASN GLU GLY ARG SEQRES 3 A 430 GLY ASN ARG ALA ARG ILE PHE ASP LEU GLU ASN TYR ILE SEQRES 4 A 430 ARG SER ALA GLU ILE ALA ARG ARG GLY ARG ILE ASP ALA SEQRES 5 A 430 PHE PHE LEU ALA ASP GLN PRO GLN LEU THR PRO ASN PRO SEQRES 6 A 430 LYS VAL ARG PRO GLU TYR PRO PHE ASP PRO ILE VAL LEU SEQRES 7 A 430 ALA ALA ALA ILE THR GLY ARG VAL PRO ASP ILE GLY GLY SEQRES 8 A 430 ILE VAL THR ALA SER THR SER PHE SER LEU PRO TYR THR SEQRES 9 A 430 LEU ALA ARG GLN ILE ALA SER VAL ASN LEU LEU SER GLY SEQRES 10 A 430 GLY ARG ILE GLY TRP ASN ALA VAL THR THR ALA ASN PRO SEQRES 11 A 430 ALA VAL ALA ALA ASN TYR GLY ALA ALA ILE ALA THR HIS SEQRES 12 A 430 ASP ASN ARG TYR GLU ARG ALA GLU GLU PHE LEU GLU VAL SEQRES 13 A 430 VAL HIS GLY LEU TRP ASN SER TRP LYS PHE PRO TRP ASP SEQRES 14 A 430 GLU ALA ILE GLY PRO ASN PRO ASN PRO PHE GLY GLU VAL SEQRES 15 A 430 MET PRO ILE ASN HIS GLU GLY LYS TYR PHE LYS VAL ALA SEQRES 16 A 430 GLY PRO LEU ASN VAL PRO LEU PRO PRO TYR GLY PRO PRO SEQRES 17 A 430 VAL VAL VAL GLN ALA GLY GLY SER ASP GLN GLY LYS ARG SEQRES 18 A 430 LEU ALA SER ARG PHE GLY GLU ILE ILE TYR ALA PHE LEU SEQRES 19 A 430 GLY SER LYS PRO ALA GLY ARG ARG PHE VAL ALA GLU ALA SEQRES 20 A 430 ARG ALA ALA ALA ARG ALA GLN GLY ARG PRO GLU GLY SER SEQRES 21 A 430 THR LEU VAL LEU PRO SER PHE VAL PRO LEU ILE GLY SER SEQRES 22 A 430 THR GLU ALA GLU VAL LYS ARG LEU VAL ALA GLU TYR GLU SEQRES 23 A 430 ALA GLY LEU ASP PRO ALA GLU GLN ARG ILE GLU ALA LEU SEQRES 24 A 430 SER LYS GLN LEU GLY ILE ASP LEU GLU ARG ILE ASN VAL SEQRES 25 A 430 ASP GLN VAL LEU GLN GLU LYS ASP PHE ASN LEU PRO LYS SEQRES 26 A 430 GLU SER ALA THR PRO ILE GLY ILE LEU LYS SER MET VAL SEQRES 27 A 430 ASP VAL ALA LEU ASP GLU LYS LEU SER LEU ARG GLN LEU SEQRES 28 A 430 ALA LEU ARG MET ARG LEU ILE ALA GLY THR PRO ASP GLN SEQRES 29 A 430 VAL ALA ASP ARG LEU ILE ASP TRP TRP GLN ASP GLU ALA SEQRES 30 A 430 ALA ASP GLY PHE VAL ILE ASN ALA PRO LEU LEU PRO ASP SEQRES 31 A 430 ALA LEU GLU ILE PHE VAL ASP GLN VAL VAL PRO ILE LEU SEQRES 32 A 430 GLN SER ARG GLY VAL PHE PRO ARG SER TYR THR GLU SER SEQRES 33 A 430 THR LEU ARG GLU ARG LEU GLY LEU PRO ARG ASN PRO LEU SEQRES 34 A 430 GLY SEQRES 1 B 430 MET ARG LYS ARG ARG MET TYR LEU VAL SER TRP LEU ASN SEQRES 2 B 430 SER SER GLY VAL LEU PRO ASN SER TRP ASN GLU GLY ARG SEQRES 3 B 430 GLY ASN ARG ALA ARG ILE PHE ASP LEU GLU ASN TYR ILE SEQRES 4 B 430 ARG SER ALA GLU ILE ALA ARG ARG GLY ARG ILE ASP ALA SEQRES 5 B 430 PHE PHE LEU ALA ASP GLN PRO GLN LEU THR PRO ASN PRO SEQRES 6 B 430 LYS VAL ARG PRO GLU TYR PRO PHE ASP PRO ILE VAL LEU SEQRES 7 B 430 ALA ALA ALA ILE THR GLY ARG VAL PRO ASP ILE GLY GLY SEQRES 8 B 430 ILE VAL THR ALA SER THR SER PHE SER LEU PRO TYR THR SEQRES 9 B 430 LEU ALA ARG GLN ILE ALA SER VAL ASN LEU LEU SER GLY SEQRES 10 B 430 GLY ARG ILE GLY TRP ASN ALA VAL THR THR ALA ASN PRO SEQRES 11 B 430 ALA VAL ALA ALA ASN TYR GLY ALA ALA ILE ALA THR HIS SEQRES 12 B 430 ASP ASN ARG TYR GLU ARG ALA GLU GLU PHE LEU GLU VAL SEQRES 13 B 430 VAL HIS GLY LEU TRP ASN SER TRP LYS PHE PRO TRP ASP SEQRES 14 B 430 GLU ALA ILE GLY PRO ASN PRO ASN PRO PHE GLY GLU VAL SEQRES 15 B 430 MET PRO ILE ASN HIS GLU GLY LYS TYR PHE LYS VAL ALA SEQRES 16 B 430 GLY PRO LEU ASN VAL PRO LEU PRO PRO TYR GLY PRO PRO SEQRES 17 B 430 VAL VAL VAL GLN ALA GLY GLY SER ASP GLN GLY LYS ARG SEQRES 18 B 430 LEU ALA SER ARG PHE GLY GLU ILE ILE TYR ALA PHE LEU SEQRES 19 B 430 GLY SER LYS PRO ALA GLY ARG ARG PHE VAL ALA GLU ALA SEQRES 20 B 430 ARG ALA ALA ALA ARG ALA GLN GLY ARG PRO GLU GLY SER SEQRES 21 B 430 THR LEU VAL LEU PRO SER PHE VAL PRO LEU ILE GLY SER SEQRES 22 B 430 THR GLU ALA GLU VAL LYS ARG LEU VAL ALA GLU TYR GLU SEQRES 23 B 430 ALA GLY LEU ASP PRO ALA GLU GLN ARG ILE GLU ALA LEU SEQRES 24 B 430 SER LYS GLN LEU GLY ILE ASP LEU GLU ARG ILE ASN VAL SEQRES 25 B 430 ASP GLN VAL LEU GLN GLU LYS ASP PHE ASN LEU PRO LYS SEQRES 26 B 430 GLU SER ALA THR PRO ILE GLY ILE LEU LYS SER MET VAL SEQRES 27 B 430 ASP VAL ALA LEU ASP GLU LYS LEU SER LEU ARG GLN LEU SEQRES 28 B 430 ALA LEU ARG MET ARG LEU ILE ALA GLY THR PRO ASP GLN SEQRES 29 B 430 VAL ALA ASP ARG LEU ILE ASP TRP TRP GLN ASP GLU ALA SEQRES 30 B 430 ALA ASP GLY PHE VAL ILE ASN ALA PRO LEU LEU PRO ASP SEQRES 31 B 430 ALA LEU GLU ILE PHE VAL ASP GLN VAL VAL PRO ILE LEU SEQRES 32 B 430 GLN SER ARG GLY VAL PHE PRO ARG SER TYR THR GLU SER SEQRES 33 B 430 THR LEU ARG GLU ARG LEU GLY LEU PRO ARG ASN PRO LEU SEQRES 34 B 430 GLY HET PE4 A 501 58 HET SO4 A 502 5 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM SO4 SULFATE ION HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 3 PE4 C16 H34 O8 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *584(H2 O) HELIX 1 AA1 ASN A 20 GLU A 24 5 5 HELIX 2 AA2 ASN A 28 PHE A 33 5 6 HELIX 3 AA3 ASP A 34 GLY A 48 1 15 HELIX 4 AA4 ASP A 74 VAL A 86 1 13 HELIX 5 AA5 LEU A 101 SER A 116 1 16 HELIX 6 AA6 ASN A 129 TYR A 136 1 8 HELIX 7 AA7 THR A 142 ASN A 162 1 21 HELIX 8 AA8 PRO A 167 ALA A 171 5 5 HELIX 9 AA9 SER A 216 GLY A 227 1 12 HELIX 10 AB1 SER A 236 GLN A 254 1 19 HELIX 11 AB2 THR A 274 GLY A 288 1 15 HELIX 12 AB3 PRO A 291 GLY A 304 1 14 HELIX 13 AB4 GLN A 317 PHE A 321 5 5 HELIX 14 AB5 PRO A 330 LYS A 345 1 16 HELIX 15 AB6 SER A 347 MET A 355 1 9 HELIX 16 AB7 THR A 361 ASP A 375 1 15 HELIX 17 AB8 PRO A 389 VAL A 399 1 11 HELIX 18 AB9 VAL A 399 ARG A 406 1 8 HELIX 19 AC1 THR A 417 LEU A 422 1 6 HELIX 20 AC2 ASN B 20 GLU B 24 5 5 HELIX 21 AC3 ASN B 28 PHE B 33 5 6 HELIX 22 AC4 ASP B 34 GLY B 48 1 15 HELIX 23 AC5 ASP B 74 VAL B 86 1 13 HELIX 24 AC6 LEU B 101 SER B 116 1 16 HELIX 25 AC7 ASN B 129 ASN B 135 1 7 HELIX 26 AC8 THR B 142 ASN B 162 1 21 HELIX 27 AC9 SER B 216 GLY B 227 1 12 HELIX 28 AD1 SER B 236 GLN B 254 1 19 HELIX 29 AD2 THR B 274 ALA B 287 1 14 HELIX 30 AD3 ARG B 295 LEU B 303 1 9 HELIX 31 AD4 PRO B 330 ASP B 343 1 14 HELIX 32 AD5 SER B 347 ARG B 356 1 10 HELIX 33 AD6 THR B 361 ASP B 375 1 15 HELIX 34 AD7 PRO B 389 VAL B 399 1 11 HELIX 35 AD8 VAL B 399 ARG B 406 1 8 HELIX 36 AD9 THR B 417 LEU B 422 1 6 SHEET 1 AA1 9 TYR A 7 TRP A 11 0 SHEET 2 AA1 9 ALA A 52 LEU A 55 1 O PHE A 54 N SER A 10 SHEET 3 AA1 9 GLY A 90 SER A 96 1 O ILE A 92 N LEU A 55 SHEET 4 AA1 9 ILE A 120 VAL A 125 1 O GLY A 121 N GLY A 91 SHEET 5 AA1 9 VAL A 210 ALA A 213 1 O VAL A 211 N TRP A 122 SHEET 6 AA1 9 ILE A 229 PHE A 233 1 O ILE A 229 N GLN A 212 SHEET 7 AA1 9 LEU A 262 PHE A 267 1 O LEU A 264 N ILE A 230 SHEET 8 AA1 9 GLY A 380 ILE A 383 1 O VAL A 382 N PHE A 267 SHEET 9 AA1 9 TYR A 7 TRP A 11 1 N VAL A 9 O ILE A 383 SHEET 1 AA2 2 TRP A 164 LYS A 165 0 SHEET 2 AA2 2 GLU A 181 VAL A 182 -1 O GLU A 181 N LYS A 165 SHEET 1 AA3 2 HIS A 187 GLU A 188 0 SHEET 2 AA3 2 LYS A 193 VAL A 194 -1 O VAL A 194 N HIS A 187 SHEET 1 AA4 2 PRO A 269 ILE A 271 0 SHEET 2 AA4 2 ILE A 358 GLY A 360 1 O ILE A 358 N LEU A 270 SHEET 1 AA510 LEU B 357 GLY B 360 0 SHEET 2 AA510 LEU B 262 ILE B 271 1 N LEU B 270 O GLY B 360 SHEET 3 AA510 GLY B 380 ILE B 383 1 O VAL B 382 N PRO B 265 SHEET 4 AA510 TYR B 7 TRP B 11 1 N VAL B 9 O ILE B 383 SHEET 5 AA510 ALA B 52 LEU B 55 1 O PHE B 54 N SER B 10 SHEET 6 AA510 GLY B 90 SER B 96 1 O ILE B 92 N LEU B 55 SHEET 7 AA510 ILE B 120 VAL B 125 1 O GLY B 121 N GLY B 91 SHEET 8 AA510 VAL B 210 GLN B 212 1 O VAL B 211 N TRP B 122 SHEET 9 AA510 ILE B 229 ALA B 232 1 O ILE B 229 N GLN B 212 SHEET 10 AA510 LEU B 262 ILE B 271 1 O LEU B 262 N ILE B 230 SHEET 1 AA6 2 TRP B 164 LYS B 165 0 SHEET 2 AA6 2 GLU B 181 VAL B 182 -1 O GLU B 181 N LYS B 165 SHEET 1 AA7 2 HIS B 187 GLU B 188 0 SHEET 2 AA7 2 LYS B 193 VAL B 194 -1 O VAL B 194 N HIS B 187 CISPEP 1 GLY A 196 PRO A 197 0 -0.43 CISPEP 2 LEU A 388 PRO A 389 0 -3.45 CISPEP 3 GLY B 196 PRO B 197 0 -1.11 CISPEP 4 ASP B 290 PRO B 291 0 -2.75 CISPEP 5 LEU B 388 PRO B 389 0 -1.55 SITE 1 AC1 11 TRP A 11 PHE A 54 ALA A 56 ASP A 57 SITE 2 AC1 11 THR A 94 ASN A 123 TYR A 231 ALA A 232 SITE 3 AC1 11 PHE A 233 ILE A 333 HOH A 868 SITE 1 AC2 5 HIS A 143 TYR A 147 GLY A 214 SER A 216 SITE 2 AC2 5 HOH A 612 CRYST1 87.332 87.332 262.704 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003807 0.00000