HEADER TRANSPORT PROTEIN/INHIBITOR 15-SEP-15 5DQQ TITLE STRUCTURE, INHIBITION AND REGULATION OF TWO-PORE CHANNEL TPC1 FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO PORE CALCIUM CHANNEL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-733, EF-HAND HELIX 4; COMPND 5 SYNONYM: CALCIUM CHANNEL PROTEIN 1, ATCCH1, FATTY ACID OXYGENATION COMPND 6 UP-REGULATED PROTEIN 2, VOLTAGE-DEPENDENT CALCIUM CHANNEL PROTEIN COMPND 7 TPC1, ATTPC1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: TPC1, CCH1, FOU2, AT4G03560, F9H3.19, T5L23.5; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DSY-5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P423_GAL1 KEYWDS MEMBRANE PROTEIN, ION CHANNEL, CALCIUM CHANNEL, SODIUM CHANNEL, KEYWDS 2 PHOSPHORYLATION DEPENDENT ION CHANNEL, ASYMMETRIC ION CHANNEL, KEYWDS 3 TANDEM PORE-FORMING DOMAINS, EF-HAND DOMAIN, N-TERMINAL DOMAIN, C- KEYWDS 4 TERMINAL DOMAIN, CALCIUM SENSORS, VOLTAGE SENSOR, SELECTIVITY KEYWDS 5 FILTER, PORE GATE, TRANSPORT PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.F.KINTZER,R.M.STROUD REVDAT 5 06-MAR-24 5DQQ 1 REMARK HETSYN LINK REVDAT 4 25-DEC-19 5DQQ 1 REMARK REVDAT 3 13-SEP-17 5DQQ 1 JRNL REMARK REVDAT 2 16-MAR-16 5DQQ 1 JRNL REVDAT 1 09-MAR-16 5DQQ 0 JRNL AUTH A.F.KINTZER,R.M.STROUD JRNL TITL STRUCTURE, INHIBITION AND REGULATION OF TWO-PORE CHANNEL JRNL TITL 2 TPC1 FROM ARABIDOPSIS THALIANA JRNL REF NATURE V. 531 258 2016 JRNL REFN ESSN 1476-4687 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.3 REMARK 3 NUMBER OF REFLECTIONS : 21270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.299 REMARK 3 R VALUE (WORKING SET) : 0.297 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7060 - 5.7391 0.98 4227 223 0.2877 0.3215 REMARK 3 2 5.7391 - 4.5576 0.99 4111 216 0.2813 0.3043 REMARK 3 3 4.5576 - 3.9821 0.99 4058 214 0.2710 0.3414 REMARK 3 4 3.9821 - 3.6184 0.83 3399 182 0.3043 0.3640 REMARK 3 5 3.6184 - 3.3592 0.58 2369 127 0.3524 0.3957 REMARK 3 6 3.3592 - 3.1612 0.31 1251 55 0.4034 0.3716 REMARK 3 7 3.1612 - 3.0030 0.15 599 27 0.5265 0.5912 REMARK 3 8 3.0030 - 2.8723 0.05 204 8 0.6498 0.8009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 108.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5472 REMARK 3 ANGLE : 0.744 7432 REMARK 3 CHIRALITY : 0.040 842 REMARK 3 PLANARITY : 0.004 914 REMARK 3 DIHEDRAL : 17.699 3156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.0661 -12.3660 15.5844 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.0821 REMARK 3 T33: -0.0025 T12: -0.1934 REMARK 3 T13: -0.2460 T23: -0.4493 REMARK 3 L TENSOR REMARK 3 L11: 2.0249 L22: 0.7740 REMARK 3 L33: 0.7621 L12: 0.0265 REMARK 3 L13: 0.5900 L23: -0.2781 REMARK 3 S TENSOR REMARK 3 S11: 0.4383 S12: -1.0496 S13: -0.7877 REMARK 3 S21: 0.4388 S22: -0.0975 S23: 0.0856 REMARK 3 S31: 0.0267 S32: -0.2541 S33: 2.3682 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-15; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL; NULL REMARK 200 PH : 9.0-9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS; SSRL REMARK 200 BEAMLINE : 8.3.1; 5.0.2; BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1, 1.006, 1.25465, 1.3854, 1.75; REMARK 200 NULL; NULL REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); DOUBLE REMARK 200 CRYSTAL SI(111); DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; PIXEL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R; DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21275 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 109.885 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M GLYCINE, PH 9.3, 50 MM POTASSIUM REMARK 280 CHLORIDE, 1 MM CALCIUM CHLORIDE, 35% PEG300, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 109.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 109.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.09000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.40500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.09000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.40500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.88500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.09000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.40500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.88500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.09000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.40500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 ASP A 17 REMARK 465 ARG A 18 REMARK 465 VAL A 19 REMARK 465 ARG A 20 REMARK 465 ARG A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 ILE A 25 REMARK 465 THR A 26 REMARK 465 HIS A 27 REMARK 465 GLY A 28 REMARK 465 THR A 29 REMARK 465 GLY A 58 REMARK 465 GLU A 59 REMARK 465 LEU A 174 REMARK 465 SER A 175 REMARK 465 PRO A 176 REMARK 465 LEU A 177 REMARK 465 ALA A 178 REMARK 465 PHE A 179 REMARK 465 ASP A 180 REMARK 465 PHE A 181 REMARK 465 LEU A 182 REMARK 465 PRO A 183 REMARK 465 PHE A 408 REMARK 465 GLU A 409 REMARK 465 HIS A 410 REMARK 465 PHE A 411 REMARK 465 PRO A 412 REMARK 465 ASP A 519 REMARK 465 GLU A 520 REMARK 465 ASN A 521 REMARK 465 THR A 522 REMARK 465 PHE A 523 REMARK 465 VAL A 591 REMARK 465 ASN A 592 REMARK 465 ALA A 593 REMARK 465 SER A 704 REMARK 465 LYS A 705 REMARK 465 SER A 706 REMARK 465 ARG A 707 REMARK 465 SER A 708 REMARK 465 GLN A 709 REMARK 465 ARG A 710 REMARK 465 VAL A 711 REMARK 465 ASP A 712 REMARK 465 THR A 713 REMARK 465 LEU A 714 REMARK 465 LEU A 715 REMARK 465 HIS A 716 REMARK 465 HIS A 717 REMARK 465 MET A 718 REMARK 465 LEU A 719 REMARK 465 GLY A 720 REMARK 465 ASP A 721 REMARK 465 GLU A 722 REMARK 465 LEU A 723 REMARK 465 SER A 724 REMARK 465 LYS A 725 REMARK 465 PRO A 726 REMARK 465 GLU A 727 REMARK 465 CYS A 728 REMARK 465 SER A 729 REMARK 465 THR A 730 REMARK 465 SER A 731 REMARK 465 ASP A 732 REMARK 465 THR A 733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 78 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 171 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 173 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ILE A 342 CG1 CG2 CD1 REMARK 470 ARG A 379 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 381 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 524 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 529 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 529 CZ3 CH2 REMARK 470 GLU A 602 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 89 OG SER A 581 1.80 REMARK 500 O VAL A 634 OG SER A 638 1.92 REMARK 500 O ALA A 513 OG1 THR A 517 1.94 REMARK 500 O LYS A 102 OH TYR A 108 1.95 REMARK 500 OG SER A 150 OD1 ASN A 153 1.97 REMARK 500 OH TYR A 579 OG SER A 654 1.98 REMARK 500 O PHE A 426 OG SER A 429 2.00 REMARK 500 O ASP A 606 N LEU A 610 2.02 REMARK 500 O LEU A 228 OH TYR A 251 2.03 REMARK 500 O TYR A 579 OH TYR A 651 2.03 REMARK 500 O PHE A 524 N GLU A 528 2.04 REMARK 500 O LEU A 72 OG SER A 75 2.05 REMARK 500 O ALA A 553 OG1 THR A 557 2.08 REMARK 500 O SER A 250 N THR A 254 2.09 REMARK 500 NZ LYS A 102 O HOH A 901 2.13 REMARK 500 O GLY A 588 ND2 ASN A 614 2.15 REMARK 500 O ILE A 260 OG1 THR A 263 2.16 REMARK 500 NE2 GLN A 693 O HOH A 902 2.17 REMARK 500 O GLY A 292 OG1 THR A 297 2.18 REMARK 500 N ALA A 604 OD2 ASP A 606 2.18 REMARK 500 OE2 GLU A 478 NZ LYS A 482 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 47 14.55 80.04 REMARK 500 GLN A 54 136.17 -179.62 REMARK 500 ARG A 62 170.83 75.52 REMARK 500 PRO A 99 -158.50 -75.87 REMARK 500 CYS A 101 -80.53 -113.76 REMARK 500 TYR A 108 86.95 37.51 REMARK 500 GLU A 111 -12.18 -148.82 REMARK 500 TYR A 114 -169.37 65.60 REMARK 500 SER A 250 -126.82 66.27 REMARK 500 LEU A 290 -74.66 -33.34 REMARK 500 LYS A 338 -3.34 83.66 REMARK 500 PRO A 361 -73.36 -104.60 REMARK 500 ARG A 398 -76.67 -94.24 REMARK 500 LYS A 401 103.24 163.89 REMARK 500 GLN A 422 -80.39 -42.86 REMARK 500 GLU A 457 3.24 81.82 REMARK 500 LEU A 534 7.87 -69.17 REMARK 500 ALA A 604 -90.10 -110.76 REMARK 500 LEU A 610 47.13 -76.15 REMARK 500 PHE A 613 6.58 97.17 REMARK 500 GLU A 694 -126.94 71.51 REMARK 500 ARG A 698 67.44 -102.35 REMARK 500 ARG A 700 20.43 83.82 REMARK 500 SER A 701 156.11 85.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 954 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 955 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 956 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 957 DISTANCE = 7.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 807 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE2 REMARK 620 2 HOH A 918 O 151.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 239 OE1 REMARK 620 2 GLU A 239 OE2 47.0 REMARK 620 3 HOH A 943 O 121.0 76.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 805 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 ASP A 454 OD2 82.9 REMARK 620 3 GLU A 528 OE1 81.3 3.1 REMARK 620 4 HOH A 932 O 80.0 3.2 2.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 806 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 335 OD1 REMARK 620 2 ASP A 337 OD1 60.8 REMARK 620 3 ASP A 337 OD2 95.7 52.0 REMARK 620 4 ASN A 339 OD1 54.0 66.1 56.1 REMARK 620 5 GLU A 341 O 65.2 124.2 123.8 71.6 REMARK 620 6 GLN A 346 OE1 114.8 101.4 122.4 165.8 113.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 66R A 809 DBREF 5DQQ A 12 733 UNP Q94KI8 TPC1_ARATH 12 733 SEQADV 5DQQ MET A 11 UNP Q94KI8 INITIATING METHIONINE SEQRES 1 A 723 MET GLY GLY GLY GLY THR ASP ARG VAL ARG ARG SER GLU SEQRES 2 A 723 ALA ILE THR HIS GLY THR PRO PHE GLN LYS ALA ALA ALA SEQRES 3 A 723 LEU VAL ASP LEU ALA GLU ASP GLY ILE GLY LEU PRO VAL SEQRES 4 A 723 GLU ILE LEU ASP GLN SER SER PHE GLY GLU SER ALA ARG SEQRES 5 A 723 TYR TYR PHE ILE PHE THR ARG LEU ASP LEU ILE TRP SER SEQRES 6 A 723 LEU ASN TYR PHE ALA LEU LEU PHE LEU ASN PHE PHE GLU SEQRES 7 A 723 GLN PRO LEU TRP CYS GLU LYS ASN PRO LYS PRO SER CYS SEQRES 8 A 723 LYS ASP ARG ASP TYR TYR TYR LEU GLY GLU LEU PRO TYR SEQRES 9 A 723 LEU THR ASN ALA GLU SER ILE ILE TYR GLU VAL ILE THR SEQRES 10 A 723 LEU ALA ILE LEU LEU VAL HIS THR PHE PHE PRO ILE SER SEQRES 11 A 723 TYR GLU GLY SER ARG ILE PHE TRP THR SER ARG LEU ASN SEQRES 12 A 723 LEU VAL LYS VAL ALA CYS VAL VAL ILE LEU PHE VAL ASP SEQRES 13 A 723 VAL LEU VAL ASP PHE LEU TYR LEU SER PRO LEU ALA PHE SEQRES 14 A 723 ASP PHE LEU PRO PHE ARG ILE ALA PRO TYR VAL ARG VAL SEQRES 15 A 723 ILE ILE PHE ILE LEU SER ILE ARG GLU LEU ARG ASP THR SEQRES 16 A 723 LEU VAL LEU LEU SER GLY MET LEU GLY THR TYR LEU ASN SEQRES 17 A 723 ILE LEU ALA LEU TRP MET LEU PHE LEU LEU PHE ALA SER SEQRES 18 A 723 TRP ILE ALA PHE VAL MET PHE GLU ASP THR GLN GLN GLY SEQRES 19 A 723 LEU THR VAL PHE THR SER TYR GLY ALA THR LEU TYR GLN SEQRES 20 A 723 MET PHE ILE LEU PHE THR THR SER ASN ASN PRO ASP VAL SEQRES 21 A 723 TRP ILE PRO ALA TYR LYS SER SER ARG TRP SER SER VAL SEQRES 22 A 723 PHE PHE VAL LEU TYR VAL LEU ILE GLY VAL TYR PHE VAL SEQRES 23 A 723 THR ASN LEU ILE LEU ALA VAL VAL TYR ASP SER PHE LYS SEQRES 24 A 723 GLU GLN LEU ALA LYS GLN VAL SER GLY MET ASP GLN MET SEQRES 25 A 723 LYS ARG ARG MET LEU GLU LYS ALA PHE GLY LEU ILE ASP SEQRES 26 A 723 SER ASP LYS ASN GLY GLU ILE ASP LYS ASN GLN CYS ILE SEQRES 27 A 723 LYS LEU PHE GLU GLN LEU THR ASN TYR ARG THR LEU PRO SEQRES 28 A 723 LYS ILE SER LYS GLU GLU PHE GLY LEU ILE PHE ASP GLU SEQRES 29 A 723 LEU ASP ASP THR ARG ASP PHE LYS ILE ASN LYS ASP GLU SEQRES 30 A 723 PHE ALA ASP LEU CYS GLN ALA ILE ALA LEU ARG PHE GLN SEQRES 31 A 723 LYS GLU GLU VAL PRO SER LEU PHE GLU HIS PHE PRO GLN SEQRES 32 A 723 ILE TYR HIS SER ALA LEU SER GLN GLN LEU ARG ALA PHE SEQRES 33 A 723 VAL ARG SER PRO ASN PHE GLY TYR ALA ILE SER PHE ILE SEQRES 34 A 723 LEU ILE ILE ASN PHE ILE ALA VAL VAL VAL GLU THR THR SEQRES 35 A 723 LEU ASP ILE GLU GLU SER SER ALA GLN LYS PRO TRP GLN SEQRES 36 A 723 VAL ALA GLU PHE VAL PHE GLY TRP ILE TYR VAL LEU GLU SEQRES 37 A 723 MET ALA LEU LYS ILE TYR THR TYR GLY PHE GLU ASN TYR SEQRES 38 A 723 TRP ARG GLU GLY ALA ASN ARG PHE ASP PHE LEU VAL THR SEQRES 39 A 723 TRP VAL ILE VAL ILE GLY GLU THR ALA THR PHE ILE THR SEQRES 40 A 723 PRO ASP GLU ASN THR PHE PHE SER ASN GLY GLU TRP ILE SEQRES 41 A 723 ARG TYR LEU LEU LEU ALA ARG MET LEU ARG LEU ILE ARG SEQRES 42 A 723 LEU LEU MET ASN VAL GLN ARG TYR ARG ALA PHE ILE ALA SEQRES 43 A 723 THR PHE ILE THR LEU ILE PRO SER LEU MET PRO TYR LEU SEQRES 44 A 723 GLY THR ILE PHE CYS VAL LEU CYS ILE TYR CYS SER ILE SEQRES 45 A 723 GLY VAL GLN VAL PHE GLY GLY LEU VAL ASN ALA GLY ASN SEQRES 46 A 723 LYS LYS LEU PHE GLU THR GLU LEU ALA GLU ASP ASP TYR SEQRES 47 A 723 LEU LEU PHE ASN PHE ASN ASP TYR PRO ASN GLY MET VAL SEQRES 48 A 723 THR LEU PHE ASN LEU LEU VAL MET GLY ASN TRP GLN VAL SEQRES 49 A 723 TRP MET GLU SER TYR LYS ASP LEU THR GLY THR TRP TRP SEQRES 50 A 723 SER ILE THR TYR PHE VAL SER PHE TYR VAL ILE THR ILE SEQRES 51 A 723 LEU LEU LEU LEU ASN LEU VAL VAL ALA PHE VAL LEU GLU SEQRES 52 A 723 ALA PHE PHE THR GLU LEU ASP LEU GLU GLU GLU GLU LYS SEQRES 53 A 723 CYS GLN GLY GLN ASP SER GLN GLU LYS ARG ASN ARG ARG SEQRES 54 A 723 ARG SER ALA GLY SER LYS SER ARG SER GLN ARG VAL ASP SEQRES 55 A 723 THR LEU LEU HIS HIS MET LEU GLY ASP GLU LEU SER LYS SEQRES 56 A 723 PRO GLU CYS SER THR SER ASP THR HET CA A 801 1 HET CA A 802 1 HET CA A 803 1 HET CA A 804 1 HET CA A 805 1 HET CA A 806 1 HET CA A 807 1 HET PLM A 808 18 HET 66R A 809 38 HETNAM CA CALCIUM ION HETNAM PLM PALMITIC ACID HETNAM 66R TRANS-NED 19 HETSYN 66R (1R,3S)-1-(3-{[4-(2-FLUOROPHENYL)PIPERAZIN-1- HETSYN 2 66R YL]METHYL}-4-METHOXYPHENYL)-2,3,4,9-TETRAHYDRO-1H- HETSYN 3 66R BETA-CARBOLINE-3-CARBOXY LIC ACID FORMUL 2 CA 7(CA 2+) FORMUL 9 PLM C16 H32 O2 FORMUL 10 66R C30 H31 F N4 O3 FORMUL 11 HOH *57(H2 O) HELIX 1 AA1 GLN A 32 LEU A 47 1 16 HELIX 2 AA2 ALA A 61 LEU A 72 1 12 HELIX 3 AA3 LEU A 72 TRP A 92 1 21 HELIX 4 AA4 THR A 116 PHE A 137 1 22 HELIX 5 AA5 PRO A 138 GLU A 142 5 5 HELIX 6 AA6 GLY A 143 SER A 150 1 8 HELIX 7 AA7 SER A 150 TYR A 173 1 24 HELIX 8 AA8 PRO A 188 LEU A 197 1 10 HELIX 9 AA9 ILE A 199 PHE A 238 1 40 HELIX 10 AB1 THR A 241 LEU A 245 5 5 HELIX 11 AB2 SER A 250 THR A 263 1 14 HELIX 12 AB3 ASN A 266 TRP A 271 1 6 HELIX 13 AB4 TRP A 271 SER A 278 1 8 HELIX 14 AB5 TRP A 280 PHE A 295 1 16 HELIX 15 AB6 PHE A 295 ASP A 335 1 41 HELIX 16 AB7 LYS A 344 ARG A 358 1 15 HELIX 17 AB8 GLU A 366 ASP A 377 1 12 HELIX 18 AB9 LYS A 385 ARG A 398 1 14 HELIX 19 AC1 SER A 417 ARG A 428 1 12 HELIX 20 AC2 SER A 429 GLU A 457 1 29 HELIX 21 AC3 ALA A 460 GLY A 487 1 28 HELIX 22 AC4 GLY A 487 GLU A 494 1 8 HELIX 23 AC5 GLU A 494 THR A 517 1 24 HELIX 24 AC6 SER A 525 LEU A 533 1 9 HELIX 25 AC7 LEU A 534 VAL A 548 5 15 HELIX 26 AC8 GLN A 549 ARG A 550 5 2 HELIX 27 AC9 TYR A 551 PHE A 587 1 37 HELIX 28 AD1 ASN A 595 LEU A 603 1 9 HELIX 29 AD2 ALA A 604 LEU A 610 1 7 HELIX 30 AD3 ASP A 615 MET A 629 1 15 HELIX 31 AD4 TRP A 632 GLY A 644 1 13 HELIX 32 AD5 TRP A 647 ILE A 660 1 14 HELIX 33 AD6 LEU A 662 LYS A 686 1 25 SHEET 1 AA1 2 GLU A 341 ASP A 343 0 SHEET 2 AA1 2 LYS A 382 ASN A 384 -1 O ILE A 383 N ILE A 342 LINK OE2 GLU A 124 CA CA A 807 1555 1555 2.43 LINK OE1 GLU A 239 CA CA A 804 1555 4555 2.90 LINK OE2 GLU A 239 CA CA A 804 1555 4555 2.53 LINK OD2 ASP A 240 CA CA A 805 1555 4555 2.37 LINK OD1 ASP A 335 CA CA A 806 1555 1555 2.63 LINK OD1 ASP A 337 CA CA A 806 1555 1555 2.53 LINK OD2 ASP A 337 CA CA A 806 1555 1555 2.48 LINK OD1 ASN A 339 CA CA A 806 1555 1555 3.18 LINK O GLU A 341 CA CA A 806 1555 1555 2.31 LINK OE1 GLN A 346 CA CA A 806 1555 1555 3.06 LINK OE2 GLU A 374 CA CA A 802 1555 1555 2.86 LINK OD2 ASP A 454 CA CA A 805 1555 1555 2.57 LINK OE1 GLU A 528 CA CA A 805 1555 1555 2.97 LINK CA CA A 804 O HOH A 943 1555 1555 2.69 LINK CA CA A 805 O HOH A 932 1555 1555 3.01 LINK CA CA A 807 O HOH A 918 1555 1555 2.95 CISPEP 1 SER A 100 CYS A 101 0 2.51 SITE 1 AC1 1 GLU A 374 SITE 1 AC2 1 ASN A 612 SITE 1 AC3 2 GLU A 239 HOH A 943 SITE 1 AC4 4 ASP A 240 ASP A 454 GLU A 528 HOH A 932 SITE 1 AC5 6 ASP A 335 ASP A 337 ASN A 339 GLU A 341 SITE 2 AC5 6 ASP A 343 GLN A 346 SITE 1 AC6 4 TRP A 92 GLU A 124 ASP A 170 HOH A 918 SITE 1 AC7 5 MET A 237 SER A 277 VAL A 283 LEU A 533 SITE 2 AC7 5 HOH A 906 SITE 1 AC8 3 TRP A 232 TYR A 251 PHE A 444 CRYST1 88.180 154.810 219.770 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004550 0.00000