HEADER HYDROLASE, STRUCTURAL PROTEIN 15-SEP-15 5DQX OBSLTE 23-JUN-21 5DQX 7EZZ TITLE CRYSTAL STRUCTURE OF SALMONELLA TYPHI - OMPLA WITH INHERENT BOUND TITLE 2 COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DETERGENT-RESISTANT PHOSPHOLIPASE A,DR-PHOSPHOLIPASE A,OUTER COMPND 5 MEMBRANE PHOSPHOLIPASE A,OM PLA,PHOSPHATIDYLCHOLINE 1-ACYLHYDROLASE; COMPND 6 EC: 3.1.1.32,3.1.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHI; SOURCE 3 ORGANISM_TAXID: 90370; SOURCE 4 GENE: PLDA, STY3602, T3340; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30B(+); SOURCE 9 OTHER_DETAILS: PROTEIN SELECTED BY PHAGE DISPLAY, T7 KEYWDS OUTER MEMBRANE PHOSPHOLIPASE A, OMPLA, MEMBRANE PROTEIN, SALMONELLA KEYWDS 2 TYPHI, HYDROLASE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PERUMAL,R.RAINA,A.AROCKIASAMY,N.SUNDARABAALAJI REVDAT 3 23-JUN-21 5DQX 1 OBSLTE HETSYN REVDAT 2 29-JUL-20 5DQX 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 21-SEP-16 5DQX 0 JRNL AUTH P.PERUMAL,R.RAINA,A.AROCKIASAMY,N.SUNDARABAALAJI JRNL TITL CRYSTAL STRUCTURE OF SALMONELLA TYPHI - OMPLA WITH INHERENT JRNL TITL 2 BOUND COFACTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 13109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.81000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.474 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.342 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.867 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4192 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3706 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5696 ; 1.451 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8474 ; 0.983 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 7.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;38.201 ;23.873 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;18.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.743 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4822 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1058 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2018 ; 1.618 ; 2.890 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2017 ; 1.617 ; 2.890 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2514 ; 2.588 ; 4.330 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2515 ; 2.588 ; 4.330 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2174 ; 1.421 ; 2.962 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2174 ; 1.420 ; 2.962 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3183 ; 2.350 ; 4.410 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4702 ; 4.075 ;23.476 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4701 ; 4.075 ;23.473 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 38 289 B 38 289 13743 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-9.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 62.803 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1QD6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 300, SODIUM PHOSPHATE, SODIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.67000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.73150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.69450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.73150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.67000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.69450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 THR A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 TYR A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 ILE A 25 REMARK 465 LYS A 26 REMARK 465 GLU A 27 REMARK 465 VAL A 28 REMARK 465 HIS A 29 REMARK 465 ASP A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 VAL A 34 REMARK 465 ARG A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ALA B 3 REMARK 465 ILE B 4 REMARK 465 LEU B 5 REMARK 465 ARG B 6 REMARK 465 GLY B 7 REMARK 465 LEU B 8 REMARK 465 LEU B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 THR B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 PRO B 15 REMARK 465 LEU B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 TYR B 19 REMARK 465 ALA B 20 REMARK 465 GLN B 21 REMARK 465 GLU B 22 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 ILE B 25 REMARK 465 LYS B 26 REMARK 465 GLU B 27 REMARK 465 VAL B 28 REMARK 465 HIS B 29 REMARK 465 ASP B 30 REMARK 465 ALA B 31 REMARK 465 PRO B 32 REMARK 465 ALA B 33 REMARK 465 VAL B 34 REMARK 465 ARG B 35 REMARK 465 GLY B 36 REMARK 465 SER B 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 MET A 42 CG SD CE REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 HIS A 46 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 PHE A 50 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 SER A 79 OG REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 ILE A 199 CD1 REMARK 470 TRP A 236 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 236 CZ3 CH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 HIS A 254 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 288 CG2 REMARK 470 ILE B 39 CG1 CG2 CD1 REMARK 470 MET B 42 CG SD CE REMARK 470 GLN B 44 CG CD OE1 NE2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 HIS B 46 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 PHE B 50 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 64 ND2 REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 ILE B 199 CD1 REMARK 470 GLU B 225 OE1 OE2 REMARK 470 TRP B 236 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 236 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 201 OD1 ASP B 203 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 -158.47 -30.90 REMARK 500 ASN A 41 -60.15 58.62 REMARK 500 ASN A 48 91.72 109.03 REMARK 500 PHE A 50 49.81 -97.41 REMARK 500 TYR A 55 -88.89 -93.34 REMARK 500 ASP A 56 -157.83 -76.72 REMARK 500 ASN A 105 41.47 -104.71 REMARK 500 ASP A 145 47.58 -143.78 REMARK 500 ASN A 205 65.84 -167.75 REMARK 500 THR A 252 -169.18 -167.03 REMARK 500 ALA B 40 -159.75 -29.59 REMARK 500 ASN B 41 -58.92 58.88 REMARK 500 GLN B 44 -163.75 -110.74 REMARK 500 ASN B 48 92.16 110.08 REMARK 500 PHE B 50 50.14 -96.17 REMARK 500 TYR B 55 -89.46 -94.46 REMARK 500 ASP B 56 -157.86 -76.19 REMARK 500 ASN B 105 42.75 -107.24 REMARK 500 ASP B 145 51.51 -144.51 REMARK 500 ASN B 205 64.20 -168.44 REMARK 500 THR B 252 -156.79 -169.04 REMARK 500 HIS B 254 -165.62 -78.27 REMARK 500 VAL B 255 121.06 92.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BOG B 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 126 O REMARK 620 2 ARG B 167 O 79.2 REMARK 620 3 SER B 172 OG 96.1 68.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 167 O REMARK 620 2 SER A 172 OG 69.0 REMARK 620 3 SER B 126 O 86.8 112.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QD6 RELATED DB: PDB REMARK 900 THE HOMOLOGUE PROTEIN FROM E.COLI DBREF 5DQX A 1 289 UNP P0A232 PA1_SALTI 1 289 DBREF 5DQX B 1 289 UNP P0A232 PA1_SALTI 1 289 SEQRES 1 A 289 MET ARG ALA ILE LEU ARG GLY LEU LEU PRO ALA THR LEU SEQRES 2 A 289 LEU PRO LEU ALA ALA TYR ALA GLN GLU ALA THR ILE LYS SEQRES 3 A 289 GLU VAL HIS ASP ALA PRO ALA VAL ARG GLY SER ILE ILE SEQRES 4 A 289 ALA ASN MET LEU GLN GLU HIS ASP ASN PRO PHE THR LEU SEQRES 5 A 289 TYR PRO TYR ASP THR ASN TYR LEU ILE TYR THR ASN THR SEQRES 6 A 289 SER ASP LEU ASN LYS GLU ALA ILE SER THR TYR ASN TRP SEQRES 7 A 289 SER GLU ASN ALA ARG LYS ASP GLU VAL LYS PHE GLN LEU SEQRES 8 A 289 SER LEU ALA PHE PRO LEU TRP ARG GLY ILE LEU GLY PRO SEQRES 9 A 289 ASN SER VAL LEU GLY ALA SER TYR THR GLN LYS SER TRP SEQRES 10 A 289 TRP GLN LEU SER ASN SER LYS GLU SER SER PRO PHE ARG SEQRES 11 A 289 GLU THR ASN TYR GLU PRO GLN LEU PHE LEU GLY PHE ALA SEQRES 12 A 289 THR ASP TYR ARG PHE ALA GLY TRP THR LEU ARG ASP VAL SEQRES 13 A 289 GLU MET GLY TYR ASN HIS ASP SER ASN GLY ARG SER ASP SEQRES 14 A 289 PRO THR SER ARG SER TRP ASN ARG LEU TYR THR ARG LEU SEQRES 15 A 289 MET ALA GLU ASN GLY ASN TRP LEU VAL GLU VAL LYS PRO SEQRES 16 A 289 TRP TYR VAL ILE GLY SER THR ASP ASP ASN PRO ASP ILE SEQRES 17 A 289 THR LYS TYR MET GLY TYR TYR GLN LEU LYS ILE GLY TYR SEQRES 18 A 289 HIS LEU GLY GLU ALA VAL LEU SER ALA LYS GLY GLN TYR SEQRES 19 A 289 ASN TRP ASN THR GLY TYR GLY GLY ALA GLU VAL GLY LEU SEQRES 20 A 289 SER TYR PRO VAL THR LYS HIS VAL ARG LEU TYR THR GLN SEQRES 21 A 289 VAL TYR SER GLY TYR GLY GLU SER LEU ILE ASP TYR ASN SEQRES 22 A 289 PHE ASN GLN THR ARG VAL GLY VAL GLY VAL MET LEU ASN SEQRES 23 A 289 ASP ILE PHE SEQRES 1 B 289 MET ARG ALA ILE LEU ARG GLY LEU LEU PRO ALA THR LEU SEQRES 2 B 289 LEU PRO LEU ALA ALA TYR ALA GLN GLU ALA THR ILE LYS SEQRES 3 B 289 GLU VAL HIS ASP ALA PRO ALA VAL ARG GLY SER ILE ILE SEQRES 4 B 289 ALA ASN MET LEU GLN GLU HIS ASP ASN PRO PHE THR LEU SEQRES 5 B 289 TYR PRO TYR ASP THR ASN TYR LEU ILE TYR THR ASN THR SEQRES 6 B 289 SER ASP LEU ASN LYS GLU ALA ILE SER THR TYR ASN TRP SEQRES 7 B 289 SER GLU ASN ALA ARG LYS ASP GLU VAL LYS PHE GLN LEU SEQRES 8 B 289 SER LEU ALA PHE PRO LEU TRP ARG GLY ILE LEU GLY PRO SEQRES 9 B 289 ASN SER VAL LEU GLY ALA SER TYR THR GLN LYS SER TRP SEQRES 10 B 289 TRP GLN LEU SER ASN SER LYS GLU SER SER PRO PHE ARG SEQRES 11 B 289 GLU THR ASN TYR GLU PRO GLN LEU PHE LEU GLY PHE ALA SEQRES 12 B 289 THR ASP TYR ARG PHE ALA GLY TRP THR LEU ARG ASP VAL SEQRES 13 B 289 GLU MET GLY TYR ASN HIS ASP SER ASN GLY ARG SER ASP SEQRES 14 B 289 PRO THR SER ARG SER TRP ASN ARG LEU TYR THR ARG LEU SEQRES 15 B 289 MET ALA GLU ASN GLY ASN TRP LEU VAL GLU VAL LYS PRO SEQRES 16 B 289 TRP TYR VAL ILE GLY SER THR ASP ASP ASN PRO ASP ILE SEQRES 17 B 289 THR LYS TYR MET GLY TYR TYR GLN LEU LYS ILE GLY TYR SEQRES 18 B 289 HIS LEU GLY GLU ALA VAL LEU SER ALA LYS GLY GLN TYR SEQRES 19 B 289 ASN TRP ASN THR GLY TYR GLY GLY ALA GLU VAL GLY LEU SEQRES 20 B 289 SER TYR PRO VAL THR LYS HIS VAL ARG LEU TYR THR GLN SEQRES 21 B 289 VAL TYR SER GLY TYR GLY GLU SER LEU ILE ASP TYR ASN SEQRES 22 B 289 PHE ASN GLN THR ARG VAL GLY VAL GLY VAL MET LEU ASN SEQRES 23 B 289 ASP ILE PHE HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET CA A 305 1 HET CA A 306 1 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET BOG B 305 13 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 GOL 8(C3 H8 O3) FORMUL 7 CA 2(CA 2+) FORMUL 13 BOG C14 H28 O6 FORMUL 14 HOH *18(H2 O) HELIX 1 AA1 LYS A 70 SER A 74 5 5 HELIX 2 AA2 TRP A 78 ALA A 82 5 5 HELIX 3 AA3 ASN A 122 SER A 126 5 5 HELIX 4 AA4 ASP A 207 GLY A 213 1 7 HELIX 5 AA5 LYS B 70 SER B 74 5 5 HELIX 6 AA6 TRP B 78 ALA B 82 5 5 HELIX 7 AA7 ASN B 122 SER B 126 5 5 HELIX 8 AA8 ASP B 207 GLY B 213 1 7 SHEET 1 AA114 TYR A 53 PRO A 54 0 SHEET 2 AA114 ASP A 85 ARG A 99 -1 O ALA A 94 N TYR A 53 SHEET 3 AA114 SER A 106 TRP A 118 -1 O GLN A 114 N LEU A 91 SHEET 4 AA114 PHE A 129 PHE A 148 -1 O ARG A 130 N TRP A 117 SHEET 5 AA114 TRP A 151 SER A 164 -1 O MET A 158 N LEU A 140 SHEET 6 AA114 SER A 174 ASN A 186 -1 O ARG A 177 N ASN A 161 SHEET 7 AA114 TRP A 189 VAL A 198 -1 O VAL A 191 N ALA A 184 SHEET 8 AA114 TYR A 215 LEU A 223 -1 O GLY A 220 N LEU A 190 SHEET 9 AA114 ALA A 226 TYR A 234 -1 O LEU A 228 N TYR A 221 SHEET 10 AA114 GLY A 241 THR A 252 -1 O GLY A 242 N GLN A 233 SHEET 11 AA114 VAL A 255 TYR A 265 -1 O VAL A 261 N VAL A 245 SHEET 12 AA114 ASN A 275 ASN A 286 -1 O GLY A 280 N GLN A 260 SHEET 13 AA114 ASN A 58 THR A 65 -1 N TYR A 62 O VAL A 281 SHEET 14 AA114 ASP A 85 ARG A 99 -1 O LYS A 88 N ILE A 61 SHEET 1 AA214 TYR B 53 PRO B 54 0 SHEET 2 AA214 ASP B 85 ARG B 99 -1 O ALA B 94 N TYR B 53 SHEET 3 AA214 SER B 106 TRP B 118 -1 O GLN B 114 N LEU B 91 SHEET 4 AA214 PHE B 129 PHE B 148 -1 O ARG B 130 N TRP B 117 SHEET 5 AA214 TRP B 151 SER B 164 -1 O MET B 158 N LEU B 140 SHEET 6 AA214 SER B 174 ASN B 186 -1 O ARG B 177 N ASN B 161 SHEET 7 AA214 TRP B 189 VAL B 198 -1 O VAL B 191 N ALA B 184 SHEET 8 AA214 TYR B 215 LEU B 223 -1 O GLY B 220 N LEU B 190 SHEET 9 AA214 ALA B 226 TYR B 234 -1 O LEU B 228 N TYR B 221 SHEET 10 AA214 GLY B 241 PRO B 250 -1 O GLY B 242 N GLN B 233 SHEET 11 AA214 ARG B 256 TYR B 265 -1 O VAL B 261 N VAL B 245 SHEET 12 AA214 ASN B 275 ASN B 286 -1 O GLY B 280 N GLN B 260 SHEET 13 AA214 ASN B 58 THR B 65 -1 N TYR B 62 O VAL B 281 SHEET 14 AA214 ASP B 85 ARG B 99 -1 O LYS B 88 N ILE B 61 LINK O SER A 126 CA CA A 305 1555 1555 2.36 LINK O ARG A 167 CA CA A 306 1555 1555 2.34 LINK OG SER A 172 CA CA A 306 1555 1555 2.35 LINK CA CA A 305 O ARG B 167 1555 1555 2.34 LINK CA CA A 305 OG SER B 172 1555 1555 2.34 LINK CA CA A 306 O SER B 126 1555 1555 2.34 CISPEP 1 ASP A 47 ASN A 48 0 -14.54 CISPEP 2 ASP A 169 PRO A 170 0 -1.77 CISPEP 3 ASP B 47 ASN B 48 0 -13.23 CISPEP 4 ASP B 169 PRO B 170 0 -5.21 CISPEP 5 LYS B 253 HIS B 254 0 16.25 CRYST1 79.340 83.389 95.463 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012604 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010475 0.00000