HEADER OXIDOREDUCTASE 16-SEP-15 5DRU TITLE STRUCTURE OF HIS387ALA MUTANT OF THE PROPIONALDEHYDE DEHYDROGENASE TITLE 2 FROM THE CLOSTRIDIUM PHYTOFERMENTANS FUCOSE UTILISATION BACTERIAL TITLE 3 MICROCOMPARTMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-462; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PHYTOFERMENTANS; SOURCE 3 ORGANISM_TAXID: 66219; SOURCE 4 GENE: CPHY_1178; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ACYLATING ALDEHYDE DEHYDROGENASE, BACTERIAL MICROCOMPARTMENT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.R.TUCK,K.ALTENBACH,A.T.FU,A.D.CRAWSHAW,D.J.CAMPOPIANO,D.J.CLARKE, AUTHOR 2 J.MARLES-WRIGHT REVDAT 2 10-JAN-24 5DRU 1 REMARK REVDAT 1 16-MAR-16 5DRU 0 JRNL AUTH L.R.TUCK,K.ALTENBACH,T.F.ANG,A.D.CRAWSHAW,D.J.CAMPOPIANO, JRNL AUTH 2 D.J.CLARKE,J.MARLES-WRIGHT JRNL TITL INSIGHT INTO COENZYME A COFACTOR BINDING AND THE MECHANISM JRNL TITL 2 OF ACYL-TRANSFER IN AN ACYLATING ALDEHYDE DEHYDROGENASE FROM JRNL TITL 3 CLOSTRIDIUM PHYTOFERMENTANS. JRNL REF SCI REP V. 6 22108 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26899032 JRNL DOI 10.1038/SREP22108 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 24318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5385 - 4.3319 0.95 2644 140 0.1381 0.2065 REMARK 3 2 4.3319 - 3.4389 0.98 2601 135 0.1492 0.2106 REMARK 3 3 3.4389 - 3.0044 0.99 2603 139 0.1947 0.2630 REMARK 3 4 3.0044 - 2.7297 0.99 2586 140 0.2077 0.2972 REMARK 3 5 2.7297 - 2.5341 1.00 2583 142 0.2192 0.3215 REMARK 3 6 2.5341 - 2.3847 1.00 2590 136 0.2237 0.3067 REMARK 3 7 2.3847 - 2.2653 1.00 2576 158 0.2478 0.3408 REMARK 3 8 2.2653 - 2.1667 0.91 2329 119 0.3641 0.4835 REMARK 3 9 2.1667 - 2.0833 0.99 2547 150 0.2604 0.3110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3294 REMARK 3 ANGLE : 1.442 4457 REMARK 3 CHIRALITY : 0.057 530 REMARK 3 PLANARITY : 0.008 578 REMARK 3 DIHEDRAL : 14.527 1227 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8936 16.2737 23.9830 REMARK 3 T TENSOR REMARK 3 T11: 0.6705 T22: 0.4845 REMARK 3 T33: 0.3513 T12: -0.0661 REMARK 3 T13: 0.0854 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 3.6982 L22: 2.4260 REMARK 3 L33: 1.1817 L12: 1.9345 REMARK 3 L13: -0.3555 L23: -0.3990 REMARK 3 S TENSOR REMARK 3 S11: 0.4386 S12: -0.4003 S13: 0.2018 REMARK 3 S21: 0.6155 S22: -0.2844 S23: 0.0973 REMARK 3 S31: -0.4132 S32: 0.1188 S33: -0.1548 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2059 3.0423 19.2824 REMARK 3 T TENSOR REMARK 3 T11: 0.3499 T22: 0.3583 REMARK 3 T33: 0.3008 T12: 0.0104 REMARK 3 T13: -0.0404 T23: 0.0766 REMARK 3 L TENSOR REMARK 3 L11: 4.3963 L22: 6.3644 REMARK 3 L33: 3.4233 L12: 4.9159 REMARK 3 L13: -2.5153 L23: -4.1330 REMARK 3 S TENSOR REMARK 3 S11: 0.2698 S12: -0.3830 S13: -0.7441 REMARK 3 S21: 0.7753 S22: -0.3369 S23: -0.3430 REMARK 3 S31: -0.5430 S32: -0.1354 S33: 0.2323 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3805 13.4904 3.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.3895 T22: 0.3350 REMARK 3 T33: 0.2742 T12: 0.0429 REMARK 3 T13: -0.0248 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.4003 L22: 2.0076 REMARK 3 L33: 4.2352 L12: 1.4659 REMARK 3 L13: -4.6976 L23: -1.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: -0.0801 S13: -0.2510 REMARK 3 S21: 0.1497 S22: -0.0900 S23: -0.0358 REMARK 3 S31: -0.1595 S32: 0.0213 S33: -0.0261 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5774 19.6251 19.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.5675 T22: 0.2784 REMARK 3 T33: 0.3225 T12: -0.0207 REMARK 3 T13: 0.1085 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.0199 L22: 2.5863 REMARK 3 L33: 2.0244 L12: 1.0329 REMARK 3 L13: -0.4653 L23: -0.2803 REMARK 3 S TENSOR REMARK 3 S11: 0.5205 S12: -0.1974 S13: 0.2671 REMARK 3 S21: 0.3464 S22: -0.3495 S23: 0.3011 REMARK 3 S31: -0.5704 S32: -0.1205 S33: -0.1260 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4665 -5.2776 12.4232 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.4565 REMARK 3 T33: 0.3752 T12: -0.0168 REMARK 3 T13: 0.0692 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.9654 L22: 1.0183 REMARK 3 L33: 1.7820 L12: -0.1168 REMARK 3 L13: -0.6651 L23: 0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: 0.0908 S13: -0.3250 REMARK 3 S21: 0.1985 S22: 0.0063 S23: 0.2361 REMARK 3 S31: 0.1461 S32: -0.5094 S33: 0.1235 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6192 0.3704 24.0042 REMARK 3 T TENSOR REMARK 3 T11: 0.5717 T22: 0.7161 REMARK 3 T33: 0.3973 T12: 0.0871 REMARK 3 T13: 0.1557 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 6.7566 L22: 6.6711 REMARK 3 L33: 6.3025 L12: -3.9893 REMARK 3 L13: -0.5867 L23: 1.5342 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.1637 S13: -0.1367 REMARK 3 S21: 0.6884 S22: -0.2065 S23: 0.5324 REMARK 3 S31: -0.4395 S32: -0.7528 S33: 0.0004 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2482 -1.4194 4.4731 REMARK 3 T TENSOR REMARK 3 T11: 0.3647 T22: 0.4551 REMARK 3 T33: 0.3444 T12: 0.0141 REMARK 3 T13: 0.0130 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.7148 L22: 1.1048 REMARK 3 L33: 1.3648 L12: 0.2981 REMARK 3 L13: -0.8791 L23: -0.2443 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: 0.2389 S13: -0.0881 REMARK 3 S21: 0.0796 S22: 0.1065 S23: 0.1723 REMARK 3 S31: 0.0027 S32: -0.4368 S33: -0.0173 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 - 5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.083 REMARK 200 RESOLUTION RANGE LOW (A) : 40.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 18.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 1.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C3S REMARK 200 REMARK 200 REMARK: BIPYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN 50 MM TRIS.HCL, PH 8.0, 150 REMARK 280 MM NACL. 1:2 HANGING DROPS OVER: 0.1 M SODIUM ACETATE, PH 4.7, REMARK 280 1.7 - 1.8 M AMMONIUM SULPHATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 69.22400 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.37900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.18950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.22400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.56850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.56850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.22400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.18950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 69.22400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.37900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.22400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.37900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.22400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 63.56850 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 21.18950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.22400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 21.18950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 63.56850 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.22400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.22400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 42.37900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 GLY A 19 REMARK 465 GLN A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 GLN A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 77 O HOH A 602 1.36 REMARK 500 HG1 THR A 437 OE1 GLU A 439 1.59 REMARK 500 OE2 GLU A 346 O HOH A 601 2.07 REMARK 500 O HOH A 709 O HOH A 715 2.07 REMARK 500 O HOH A 703 O HOH A 725 2.07 REMARK 500 O SER A 206 NE2 GLN A 208 2.10 REMARK 500 NH1 ARG A 77 O HOH A 602 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS A 394 OD2 ASP A 397 15555 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 188 32.19 75.92 REMARK 500 ASN A 239 66.90 -152.52 REMARK 500 ASP A 245 -169.66 -102.55 REMARK 500 PRO A 361 58.49 -69.56 REMARK 500 ALA A 387 -88.27 -94.80 REMARK 500 PHE A 447 37.44 -95.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 DBREF 5DRU A 20 462 UNP A9KN57 A9KN57_CLOPH 20 462 SEQADV 5DRU MET A 18 UNP A9KN57 INITIATING METHIONINE SEQADV 5DRU GLY A 19 UNP A9KN57 EXPRESSION TAG SEQADV 5DRU ALA A 387 UNP A9KN57 HIS 387 ENGINEERED MUTATION SEQRES 1 A 445 MET GLY GLN LEU THR GLN THR ASN LYS THR GLU LEU GLY SEQRES 2 A 445 VAL PHE ASP ASP MET ASN GLN ALA ILE GLU ALA ALA LYS SEQRES 3 A 445 GLU ALA GLN LEU VAL VAL LYS LYS MET SER MET ASP GLN SEQRES 4 A 445 ARG GLU LYS ILE ILE SER ALA ILE ARG LYS LYS THR ILE SEQRES 5 A 445 GLU HIS ALA GLU THR LEU ALA ARG MET ALA VAL GLU GLU SEQRES 6 A 445 THR GLY MET GLY ASN VAL GLY HIS LYS ILE LEU LYS HIS SEQRES 7 A 445 GLN LEU VAL ALA GLU LYS THR PRO GLY THR GLU ASP ILE SEQRES 8 A 445 THR THR THR ALA TRP SER GLY ASP ARG GLY LEU THR LEU SEQRES 9 A 445 VAL GLU MET GLY PRO PHE GLY VAL ILE GLY ALA ILE THR SEQRES 10 A 445 PRO CYS THR ASN PRO SER GLU THR ILE ILE CYS ASN THR SEQRES 11 A 445 ILE GLY MET LEU ALA GLY GLY ASN THR VAL VAL PHE ASN SEQRES 12 A 445 PRO HIS PRO ALA ALA ILE LYS THR SER ASN PHE ALA VAL SEQRES 13 A 445 GLN LEU ILE ASN GLU ALA SER LEU SER ALA GLY GLY PRO SEQRES 14 A 445 VAL ASN ILE ALA CYS SER VAL ARG LYS PRO THR LEU ASP SEQRES 15 A 445 SER SER LYS ILE MET MET SER HIS GLN ASP ILE PRO LEU SEQRES 16 A 445 ILE ALA ALA THR GLY GLY PRO GLY VAL VAL THR ALA VAL SEQRES 17 A 445 LEU GLN SER GLY LYS ARG GLY ILE GLY ALA GLY ALA GLY SEQRES 18 A 445 ASN PRO PRO VAL LEU VAL ASP GLU THR ALA ASP ILE ARG SEQRES 19 A 445 LYS ALA ALA GLU ASP ILE ILE ASN GLY CYS THR PHE ASP SEQRES 20 A 445 ASN ASN LEU PRO CYS ILE ALA GLU LYS GLU VAL VAL ALA SEQRES 21 A 445 ILE ASP ALA ILE ALA ASN GLU LEU MET ASN TYR MET VAL SEQRES 22 A 445 LYS GLU GLN GLY CYS TYR ALA ILE THR LYS GLU GLN GLN SEQRES 23 A 445 GLU LYS LEU THR ASN LEU VAL ILE THR PRO LYS GLY LEU SEQRES 24 A 445 ASN ARG ASN CYS VAL GLY LYS ASP ALA ARG THR LEU LEU SEQRES 25 A 445 GLY MET ILE GLY ILE ASP VAL PRO SER ASN ILE ARG CYS SEQRES 26 A 445 ILE ILE PHE GLU GLY GLU LYS GLU HIS PRO LEU ILE SER SEQRES 27 A 445 GLU GLU LEU MET MET PRO ILE LEU GLY ILE VAL ARG ALA SEQRES 28 A 445 LYS SER PHE ASP ASP ALA VAL GLU LYS ALA VAL TRP LEU SEQRES 29 A 445 GLU HIS GLY ASN ARG ALA SER ALA HIS ILE HIS SER LYS SEQRES 30 A 445 ASN VAL ASP ARG ILE THR THR TYR ALA LYS ALA ILE ASP SEQRES 31 A 445 THR ALA ILE LEU VAL LYS ASN ALA PRO SER TYR ALA ALA SEQRES 32 A 445 ILE GLY PHE GLY GLY GLU GLY PHE CYS THR PHE THR ILE SEQRES 33 A 445 ALA SER ARG THR GLY GLU GLY LEU THR SER ALA SER THR SEQRES 34 A 445 PHE THR LYS ARG ARG ARG CYS VAL MET SER ASP SER LEU SEQRES 35 A 445 CYS ILE ARG HET SO4 A 501 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *126(H2 O) HELIX 1 AA1 ASP A 34 LYS A 50 1 17 HELIX 2 AA2 SER A 53 GLY A 84 1 32 HELIX 3 AA3 ASN A 87 THR A 102 1 16 HELIX 4 AA4 GLY A 104 ILE A 108 5 5 HELIX 5 AA5 ASN A 138 GLY A 153 1 16 HELIX 6 AA6 HIS A 162 ALA A 164 5 3 HELIX 7 AA7 ALA A 165 ALA A 183 1 19 HELIX 8 AA8 LEU A 198 SER A 206 1 9 HELIX 9 AA9 GLY A 218 LEU A 226 1 9 HELIX 10 AB1 ASP A 249 PHE A 263 1 15 HELIX 11 AB2 ASP A 264 LEU A 267 5 4 HELIX 12 AB3 ASP A 279 GLN A 293 1 15 HELIX 13 AB4 THR A 299 VAL A 310 1 12 HELIX 14 AB5 ASP A 324 ILE A 332 1 9 HELIX 15 AB6 HIS A 351 GLU A 356 1 6 HELIX 16 AB7 SER A 370 HIS A 383 1 14 HELIX 17 AB8 ASN A 395 ASP A 407 1 13 HELIX 18 AB9 PRO A 416 GLY A 422 5 7 HELIX 19 AC1 SER A 443 THR A 446 5 4 SHEET 1 AA1 6 VAL A 31 PHE A 32 0 SHEET 2 AA1 6 ALA A 190 VAL A 193 1 O SER A 192 N PHE A 32 SHEET 3 AA1 6 THR A 156 ASN A 160 1 N PHE A 159 O CYS A 191 SHEET 4 AA1 6 VAL A 129 ILE A 133 1 N ILE A 130 O VAL A 158 SHEET 5 AA1 6 LEU A 212 THR A 216 1 O THR A 216 N ILE A 133 SHEET 6 AA1 6 ARG A 231 ALA A 235 1 O ILE A 233 N ALA A 215 SHEET 1 AA2 3 THR A 111 GLY A 115 0 SHEET 2 AA2 3 GLY A 118 PRO A 126 -1 O THR A 120 N TRP A 113 SHEET 3 AA2 3 THR A 448 SER A 456 -1 O MET A 455 N LEU A 119 SHEET 1 AA3 7 CYS A 295 ALA A 297 0 SHEET 2 AA3 7 CYS A 342 GLU A 346 1 O CYS A 342 N TYR A 296 SHEET 3 AA3 7 ILE A 362 ALA A 368 1 O LEU A 363 N ILE A 343 SHEET 4 AA3 7 GLU A 274 ILE A 278 1 N VAL A 275 O GLY A 364 SHEET 5 AA3 7 PRO A 241 VAL A 244 1 N VAL A 242 O VAL A 276 SHEET 6 AA3 7 SER A 388 HIS A 392 1 O HIS A 392 N LEU A 243 SHEET 7 AA3 7 ILE A 410 LYS A 413 1 O VAL A 412 N ILE A 391 SHEET 1 AA4 2 ILE A 311 THR A 312 0 SHEET 2 AA4 2 GLY A 315 LEU A 316 -1 O GLY A 315 N THR A 312 SHEET 1 AA5 2 ILE A 433 ALA A 434 0 SHEET 2 AA5 2 GLY A 440 LEU A 441 -1 O GLY A 440 N ALA A 434 CISPEP 1 GLY A 185 PRO A 186 0 3.23 SITE 1 AC1 2 ARG A 398 HOH A 614 CRYST1 138.448 138.448 84.758 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011798 0.00000