HEADER PROTEIN BINDING 16-SEP-15 5DRV TITLE CRYSTAL STRUCTURE OF THE G3BP2 NTF2-LIKE DOMAIN IN COMPLEX WITH A TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NTF2-LIKE DOMAIN, UNP RESIDUES 1-139; COMPND 5 SYNONYM: G3BP-2,GAP SH3 DOMAIN-BINDING PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 1785-1792; COMPND 11 SYNONYM: NSP3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: G3BP2, KIAA0660; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SEMLIKI FOREST VIRUS; SOURCE 14 ORGANISM_COMMON: SFV; SOURCE 15 ORGANISM_TAXID: 11033 KEYWDS NTF2-LIKE, G3BP, PEPTIDE COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR O.KRISTENSEN REVDAT 3 10-JAN-24 5DRV 1 REMARK REVDAT 2 28-OCT-15 5DRV 1 JRNL REVDAT 1 14-OCT-15 5DRV 0 JRNL AUTH O.KRISTENSEN JRNL TITL CRYSTAL STRUCTURE OF THE G3BP2 NTF2-LIKE DOMAIN IN COMPLEX JRNL TITL 2 WITH A CANONICAL FGDF MOTIF PEPTIDE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 467 53 2015 JRNL REFN ESSN 1090-2104 JRNL PMID 26410532 JRNL DOI 10.1016/J.BBRC.2015.09.123 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 5273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6450 - 4.3641 1.00 1235 137 0.1922 0.2454 REMARK 3 2 4.3641 - 3.4646 1.00 1186 131 0.2589 0.3270 REMARK 3 3 3.4646 - 3.0268 0.99 1164 125 0.3105 0.3583 REMARK 3 4 3.0268 - 2.7502 0.99 1162 133 0.3676 0.3923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1162 REMARK 3 ANGLE : 0.577 1563 REMARK 3 CHIRALITY : 0.019 162 REMARK 3 PLANARITY : 0.005 205 REMARK 3 DIHEDRAL : 9.402 418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3016 32.8333 11.1276 REMARK 3 T TENSOR REMARK 3 T11: 0.8184 T22: 0.6315 REMARK 3 T33: 0.5417 T12: -0.1014 REMARK 3 T13: -0.1620 T23: -0.1062 REMARK 3 L TENSOR REMARK 3 L11: 8.4190 L22: 4.5628 REMARK 3 L33: 3.1998 L12: 1.9405 REMARK 3 L13: 1.2845 L23: 1.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.4582 S13: 0.6733 REMARK 3 S21: -0.4943 S22: 0.0969 S23: 0.2524 REMARK 3 S31: -0.4938 S32: 0.0404 S33: -0.1232 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9019 33.6439 -3.6077 REMARK 3 T TENSOR REMARK 3 T11: 0.9522 T22: 0.9331 REMARK 3 T33: 0.8137 T12: -0.0364 REMARK 3 T13: -0.3707 T23: 0.2083 REMARK 3 L TENSOR REMARK 3 L11: 3.7510 L22: 3.5719 REMARK 3 L33: 7.2447 L12: -1.3598 REMARK 3 L13: -4.6757 L23: 3.0399 REMARK 3 S TENSOR REMARK 3 S11: 0.7243 S12: 1.4368 S13: 0.0277 REMARK 3 S21: -0.6991 S22: -0.8239 S23: 0.1193 REMARK 3 S31: -1.7873 S32: 0.1022 S33: 0.2356 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3575 25.2419 4.4714 REMARK 3 T TENSOR REMARK 3 T11: 0.7395 T22: 0.6381 REMARK 3 T33: 0.3703 T12: -0.1732 REMARK 3 T13: -0.1692 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 5.0535 L22: 7.6415 REMARK 3 L33: 0.9499 L12: 3.1653 REMARK 3 L13: -0.9556 L23: 1.8554 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.3097 S13: -0.0930 REMARK 3 S21: -0.0775 S22: -0.1731 S23: 0.1225 REMARK 3 S31: -0.4290 S32: -0.0140 S33: 0.1907 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8454 39.2556 14.1652 REMARK 3 T TENSOR REMARK 3 T11: 1.5166 T22: 1.0648 REMARK 3 T33: 0.6631 T12: -0.1135 REMARK 3 T13: -0.1834 T23: -0.3197 REMARK 3 L TENSOR REMARK 3 L11: 2.0381 L22: 1.9949 REMARK 3 L33: 6.7665 L12: -7.6123 REMARK 3 L13: 6.6901 L23: -8.2673 REMARK 3 S TENSOR REMARK 3 S11: -0.8136 S12: -3.3147 S13: 1.5067 REMARK 3 S21: -0.4180 S22: 1.3646 S23: -0.4009 REMARK 3 S31: -1.9079 S32: -2.6017 S33: 0.0408 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 20.60 REMARK 200 R MERGE FOR SHELL (I) : 2.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FCM REMARK 200 REMARK 200 REMARK: LONG TRIGONAL NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M TRI-SODIUM CITRATE, 20 % REMARK 280 GLYCEROL, 0.1 M SODIUM CACODYLATE (PH 6.4), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.42500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.38084 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.01000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.42500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.38084 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.01000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.42500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.38084 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.01000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.42500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.38084 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.01000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.42500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.38084 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.01000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.42500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.38084 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.01000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.76167 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 76.02000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.76167 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 76.02000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.76167 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 76.02000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.76167 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.02000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.76167 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 76.02000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.76167 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 76.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SD MET A 109 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 VAL A 45 REMARK 465 ASP A 46 REMARK 465 ALA A 47 REMARK 465 SER A 48 REMARK 465 GLY A 49 REMARK 465 LYS A 50 REMARK 465 PRO A 51 REMARK 465 GLN A 52 REMARK 465 GLU A 53 REMARK 465 ALA A 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 109 CE MET A 109 4555 1.62 REMARK 500 SD MET A 109 CE MET A 109 4555 1.79 REMARK 500 CG MET A 109 SD MET A 109 4555 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 109 CB - CG - SD ANGL. DEV. = 19.0 DEGREES REMARK 500 MET A 109 CG - SD - CE ANGL. DEV. = 31.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 25 -76.44 -79.01 REMARK 500 ASN A 69 84.68 55.06 REMARK 500 THR A 85 -153.07 -128.64 REMARK 500 PRO A 121 -78.57 -118.15 REMARK 500 ASP B 5 39.44 -95.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FCJ RELATED DB: PDB REMARK 900 4FCJ CONTAINS THE SAME DOMAIN, BUT OF THE HUMAN G3BP1 ISOFORM REMARK 900 RELATED ID: 4FCM RELATED DB: PDB REMARK 900 4FCM CONTAINS THE SAME DOMAIN, BUT OF THE HUMAN G3BP1 ISOFORM REMARK 900 RELATED ID: 3Q90 RELATED DB: PDB REMARK 900 3Q90 CONTAINS THE SAME DOMAIN, BUT OF THE HUMAN G3BP1 ISOFORM REMARK 900 RELATED ID: 4IIA RELATED DB: PDB REMARK 900 4IIA CONTAINS THE SAME DOMAIN, BUT OF THE HUMAN G3BP1 ISOFORM DBREF 5DRV A 1 139 UNP Q9UN86 G3BP2_HUMAN 1 139 DBREF 5DRV B 1 8 UNP P08411 POLN_SFV 1785 1792 SEQADV 5DRV GLY A -2 UNP Q9UN86 EXPRESSION TAG SEQADV 5DRV SER A -1 UNP Q9UN86 EXPRESSION TAG SEQADV 5DRV HIS A 0 UNP Q9UN86 EXPRESSION TAG SEQRES 1 A 142 GLY SER HIS MET VAL MET GLU LYS PRO SER PRO LEU LEU SEQRES 2 A 142 VAL GLY ARG GLU PHE VAL ARG GLN TYR TYR THR LEU LEU SEQRES 3 A 142 ASN LYS ALA PRO GLU TYR LEU HIS ARG PHE TYR GLY ARG SEQRES 4 A 142 ASN SER SER TYR VAL HIS GLY GLY VAL ASP ALA SER GLY SEQRES 5 A 142 LYS PRO GLN GLU ALA VAL TYR GLY GLN ASN ASP ILE HIS SEQRES 6 A 142 HIS LYS VAL LEU SER LEU ASN PHE SER GLU CYS HIS THR SEQRES 7 A 142 LYS ILE ARG HIS VAL ASP ALA HIS ALA THR LEU SER ASP SEQRES 8 A 142 GLY VAL VAL VAL GLN VAL MET GLY LEU LEU SER ASN SER SEQRES 9 A 142 GLY GLN PRO GLU ARG LYS PHE MET GLN THR PHE VAL LEU SEQRES 10 A 142 ALA PRO GLU GLY SER VAL PRO ASN LYS PHE TYR VAL HIS SEQRES 11 A 142 ASN ASP MET PHE ARG TYR GLU ASP GLU VAL PHE GLY SEQRES 1 B 8 LEU THR PHE GLY ASP PHE ASP GLU HELIX 1 AA1 SER A 7 ALA A 26 1 20 HELIX 2 AA2 PRO A 27 ARG A 32 5 6 HELIX 3 AA3 GLY A 57 SER A 67 1 11 HELIX 4 AA4 LEU A 86 ASP A 88 5 3 HELIX 5 AA5 GLU A 134 PHE A 138 1 5 SHEET 1 AA1 5 TYR A 34 GLY A 43 0 SHEET 2 AA1 5 LYS A 123 TYR A 133 1 O PHE A 131 N VAL A 41 SHEET 3 AA1 5 ARG A 106 PRO A 116 -1 N ALA A 115 O TYR A 125 SHEET 4 AA1 5 VAL A 90 SER A 99 -1 N VAL A 90 O LEU A 114 SHEET 5 AA1 5 HIS A 74 ALA A 84 -1 N HIS A 74 O SER A 99 SHEET 1 AA2 3 TYR A 34 GLY A 43 0 SHEET 2 AA2 3 LYS A 123 TYR A 133 1 O PHE A 131 N VAL A 41 SHEET 3 AA2 3 THR B 2 PHE B 3 1 O THR B 2 N PHE A 124 CISPEP 1 GLY A 43 GLY A 44 0 0.31 CISPEP 2 SER A 119 VAL A 120 0 -3.90 CISPEP 3 VAL A 120 PRO A 121 0 -10.10 CRYST1 94.850 94.850 114.030 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010543 0.006087 0.000000 0.00000 SCALE2 0.000000 0.012174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008770 0.00000