HEADER IMMUNE SYSTEM 17-SEP-15 5DT1 TITLE CRYSTAL STRUCTURE OF HUMAN FAB CAP256-VRC26.25, A POTENT V1V2-DIRECTED TITLE 2 HIV-1 BROADLY NEUTRALIZING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN OF BROADLY NEUTRALIZING ANTIBODY VRC26.25; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB LIGHT CHAIN OF BROADLY NEUTRALIZING ANTIBODY VRC26.25; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: EXPI 293 CELLS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: EXPI 293 CELLS KEYWDS VRC26, CAP256, V1V2, HIV-1, ENV, ENVELOPE, BROADLY NEUTRALIZING, KEYWDS 2 SUPERINFECTION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.GORMAN,P.D.KWONG REVDAT 6 15-NOV-23 5DT1 1 REMARK REVDAT 5 27-SEP-23 5DT1 1 HETSYN REVDAT 4 29-JUL-20 5DT1 1 COMPND JRNL REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 30-DEC-15 5DT1 1 JRNL REVDAT 2 28-OCT-15 5DT1 1 JRNL REVDAT 1 21-OCT-15 5DT1 0 JRNL AUTH N.A.DORIA-ROSE,J.N.BHIMAN,R.S.ROARK,C.A.SCHRAMM,J.GORMAN, JRNL AUTH 2 G.Y.CHUANG,M.PANCERA,E.M.CALE,M.J.ERNANDES,M.K.LOUDER, JRNL AUTH 3 M.ASOKAN,R.T.BAILER,A.DRUZ,I.R.FRASCHILLA,N.J.GARRETT, JRNL AUTH 4 M.JAROSINSKI,R.M.LYNCH,K.MCKEE,S.O'DELL,A.PEGU,S.D.SCHMIDT, JRNL AUTH 5 R.P.STAUPE,M.S.SUTTON,K.WANG,C.K.WIBMER,B.F.HAYNES, JRNL AUTH 6 S.ABDOOL-KARIM,L.SHAPIRO,P.D.KWONG,P.L.MOORE,L.MORRIS, JRNL AUTH 7 J.R.MASCOLA JRNL TITL NEW MEMBER OF THE V1V2-DIRECTED CAP256-VRC26 LINEAGE THAT JRNL TITL 2 SHOWS INCREASED BREADTH AND EXCEPTIONAL POTENCY. JRNL REF J.VIROL. V. 90 76 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26468542 JRNL DOI 10.1128/JVI.01791-15 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 33622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6236 - 4.4713 1.00 3148 167 0.1690 0.2171 REMARK 3 2 4.4713 - 3.5496 1.00 3021 159 0.1433 0.1843 REMARK 3 3 3.5496 - 3.1010 1.00 2971 159 0.1594 0.1969 REMARK 3 4 3.1010 - 2.8176 1.00 2984 154 0.1740 0.2175 REMARK 3 5 2.8176 - 2.6156 1.00 2960 154 0.1692 0.1986 REMARK 3 6 2.6156 - 2.4614 1.00 2927 155 0.1688 0.2250 REMARK 3 7 2.4614 - 2.3382 1.00 2931 154 0.1758 0.2316 REMARK 3 8 2.3382 - 2.2364 0.99 2910 154 0.1780 0.2366 REMARK 3 9 2.2364 - 2.1503 0.93 2711 147 0.1976 0.2454 REMARK 3 10 2.1503 - 2.0761 0.81 2354 120 0.2073 0.2670 REMARK 3 11 2.0761 - 2.0112 0.64 1873 95 0.2183 0.2845 REMARK 3 12 2.0112 - 1.9537 0.40 1148 66 0.2450 0.2542 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3617 REMARK 3 ANGLE : 0.889 4941 REMARK 3 CHIRALITY : 0.055 561 REMARK 3 PLANARITY : 0.006 626 REMARK 3 DIHEDRAL : 11.607 2152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1988 -21.3353 -32.7523 REMARK 3 T TENSOR REMARK 3 T11: 0.1562 T22: 0.1160 REMARK 3 T33: 0.1077 T12: 0.0208 REMARK 3 T13: -0.0222 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 4.3090 L22: 1.2732 REMARK 3 L33: 1.2930 L12: 1.1641 REMARK 3 L13: -1.4741 L23: -0.4178 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: -0.0607 S13: -0.0411 REMARK 3 S21: -0.0698 S22: 0.0293 S23: -0.1122 REMARK 3 S31: -0.0602 S32: 0.0733 S33: 0.0145 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 115 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8442 -13.8330 -23.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.1738 REMARK 3 T33: 0.1820 T12: 0.0066 REMARK 3 T13: -0.0399 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 4.1550 L22: 3.3294 REMARK 3 L33: 7.1855 L12: -1.0113 REMARK 3 L13: -0.6701 L23: -0.5641 REMARK 3 S TENSOR REMARK 3 S11: -0.1862 S12: -0.3314 S13: -0.0263 REMARK 3 S21: 0.3565 S22: 0.1323 S23: 0.1615 REMARK 3 S31: -0.2752 S32: -0.0003 S33: 0.0364 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9765 -15.4095 -11.6996 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1579 REMARK 3 T33: 0.1166 T12: -0.0299 REMARK 3 T13: -0.0339 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.0583 L22: 3.2198 REMARK 3 L33: 3.4662 L12: -1.6440 REMARK 3 L13: -1.6083 L23: 1.6288 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.1159 S13: 0.0614 REMARK 3 S21: 0.0976 S22: 0.0622 S23: -0.1174 REMARK 3 S31: 0.0453 S32: 0.2426 S33: -0.0666 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 108 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5407 -20.8981 -11.8407 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.1169 REMARK 3 T33: 0.1534 T12: 0.0486 REMARK 3 T13: -0.0182 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.1564 L22: 5.7524 REMARK 3 L33: 2.7593 L12: 3.1751 REMARK 3 L13: 1.2691 L23: 1.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.0505 S13: -0.0442 REMARK 3 S21: 0.0369 S22: 0.0274 S23: 0.0534 REMARK 3 S31: 0.0787 S32: -0.0063 S33: -0.0023 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33667 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.954 REMARK 200 RESOLUTION RANGE LOW (A) : 42.614 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4OD1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GROWN IN A RESERVOIR SOLUTION REMARK 280 OF 23% PEG 8000 AND 0.1M HEPES PH 7.5 AND FLASH FROZEN IN LIQUID REMARK 280 NITROGEN WITH 20% PEG 400 AS A CRYOPROTECTANT, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.50800 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.61350 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.50800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.61350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 356 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 564 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLY H 219 REMARK 465 LEU H 220 REMARK 465 GLU H 221 REMARK 465 VAL H 222 REMARK 465 LEU H 223 REMARK 465 PHE H 224 REMARK 465 GLN H 225 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 539 O HOH L 555 1.99 REMARK 500 O HOH L 530 O HOH L 533 1.99 REMARK 500 O HOH H 448 O HOH H 455 2.07 REMARK 500 O HOH H 389 O HOH H 411 2.08 REMARK 500 O HOH L 413 O HOH L 475 2.08 REMARK 500 O HOH H 416 O HOH H 454 2.14 REMARK 500 O HOH H 419 O HOH H 447 2.16 REMARK 500 O HOH H 463 O HOH H 465 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 43 -169.49 -114.37 REMARK 500 ALA H 88 161.42 177.37 REMARK 500 ASP H 100J 66.49 -102.97 REMARK 500 ASN L 27B -88.04 -100.07 REMARK 500 THR L 51 -45.60 78.80 REMARK 500 ASP L 138 37.60 70.07 REMARK 500 ASP L 151 -111.82 51.33 REMARK 500 THR L 209 30.57 -82.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OCR RELATED DB: PDB REMARK 900 SAME ANTIBODY LINEAGE REMARK 900 RELATED ID: 4OCS RELATED DB: PDB REMARK 900 SAME ANTIBODY LINEAGE REMARK 900 RELATED ID: 4OCW RELATED DB: PDB REMARK 900 SAME ANTIBODY LINEAGE REMARK 900 RELATED ID: 4OD1 RELATED DB: PDB REMARK 900 SAME ANTIBODY LINEAGE REMARK 900 RELATED ID: 4ODH RELATED DB: PDB REMARK 900 SAME ANTIBODY LINEAGE REMARK 900 RELATED ID: 4OD3 RELATED DB: PDB REMARK 900 SAME ANTIBODY LINEAGE REMARK 900 RELATED ID: 4ORG RELATED DB: PDB REMARK 900 SAME ANTIBODY LINEAGE DBREF 5DT1 H 1 225 PDB 5DT1 5DT1 1 225 DBREF 5DT1 L 1 212 PDB 5DT1 5DT1 1 212 SEQRES 1 H 257 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 257 PRO GLY THR SER LEU ARG LEU SER CYS ALA ALA SER GLN SEQRES 3 H 257 PHE ARG PHE ASP GLY TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 257 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 257 HIS ASP GLY ILE LYS LYS TYR HIS ALA GLU LYS VAL TRP SEQRES 6 H 257 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 257 LEU TYR LEU GLN MET ASN SER LEU ARG PRO GLU ASP THR SEQRES 8 H 257 ALA LEU TYR TYR CYS ALA LYS ASP LEU ARG GLU ASP GLU SEQRES 9 H 257 CYS GLU GLU TRP TRP SER ASP TYS TYS ASP PHE GLY LYS SEQRES 10 H 257 GLN LEU PRO CYS ALA LYS SER ARG GLY GLY LEU VAL GLY SEQRES 11 H 257 ILE ALA ASP ASN TRP GLY GLN GLY THR MET VAL THR VAL SEQRES 12 H 257 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 13 H 257 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 14 H 257 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 15 H 257 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 16 H 257 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 17 H 257 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 18 H 257 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 19 H 257 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 20 H 257 CYS ASP LYS GLY LEU GLU VAL LEU PHE GLN SEQRES 1 L 217 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 217 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY ASN THR SEQRES 3 L 217 SER ASN ILE GLY ASN ASN PHE VAL SER TRP TYR GLN GLN SEQRES 4 L 217 ARG PRO GLY ARG ALA PRO GLN LEU LEU ILE TYR GLU THR SEQRES 5 L 217 ASP LYS ARG PRO SER GLY ILE PRO ASP ARG PHE SER ALA SEQRES 6 L 217 SER LYS SER GLY THR SER GLY THR LEU ALA ILE THR GLY SEQRES 7 L 217 LEU GLN THR GLY ASP GLU ALA ASP TYR TYR CYS ALA THR SEQRES 8 L 217 TRP ALA ALA SER LEU SER SER ALA ARG VAL PHE GLY THR SEQRES 9 L 217 GLY THR LYS VAL ILE VAL LEU VAL GLN PRO LYS ALA ASN SEQRES 10 L 217 PRO THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER HET TYS H 100H 25 HET TYS H 100I 25 HET NAG A 1 26 HET NAG A 2 26 HET BMA A 3 20 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 TYS 2(C9 H11 N O6 S) FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 4 HOH *333(H2 O) HELIX 1 AA1 ARG H 28 ASP H 30 5 3 HELIX 2 AA2 GLU H 61 TRP H 64 5 4 HELIX 3 AA3 ARG H 83 THR H 87 5 5 HELIX 4 AA4 SER H 156 ALA H 158 5 3 HELIX 5 AA5 SER H 187 THR H 191 5 5 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 ASN L 27B ASN L 31 5 5 HELIX 8 AA8 GLN L 79 GLU L 83 5 5 HELIX 9 AA9 LEU L 95 ARG L 96 5 5 HELIX 10 AB1 SER L 121 ALA L 127 1 7 HELIX 11 AB2 THR L 181 SER L 187 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 GLU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 TYR H 32 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O ALA H 49 N TRP H 36 SHEET 6 AA2 6 LYS H 57 HIS H 59 -1 O TYR H 58 N SER H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 GLU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 ALA H 101A TRP H 103 -1 O ASN H 102 N LYS H 94 SHEET 1 AA4 2 GLU H 100 GLU H 100C 0 SHEET 2 AA4 2 LYS H 100S ARG H 100U-1 O LYS H 100S N GLU H 100B SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA6 4 THR H 131 SER H 132 0 SHEET 2 AA6 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA6 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA6 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA7 3 THR H 151 TRP H 154 0 SHEET 2 AA7 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA7 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA8 5 SER L 9 ALA L 13 0 SHEET 2 AA8 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA8 5 ALA L 84 THR L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 5 SER L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA8 5 GLN L 45 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AA9 4 SER L 9 ALA L 13 0 SHEET 2 AA9 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA9 4 ALA L 84 THR L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 VAL L 97 PHE L 98 -1 O VAL L 97 N THR L 90 SHEET 1 AB1 3 VAL L 19 SER L 24 0 SHEET 2 AB1 3 SER L 70 ILE L 75 -1 O GLY L 71 N CYS L 23 SHEET 3 AB1 3 PHE L 62 SER L 67 -1 N SER L 63 O ALA L 74 SHEET 1 AB2 4 THR L 114 PHE L 118 0 SHEET 2 AB2 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB2 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB2 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB3 4 THR L 114 PHE L 118 0 SHEET 2 AB3 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB3 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB3 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB4 4 SER L 153 VAL L 155 0 SHEET 2 AB4 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB4 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB4 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.10 SSBOND 2 CYS H 100A CYS H 100Q 1555 1555 2.08 SSBOND 3 CYS H 140 CYS H 196 1555 1555 2.09 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 5 CYS L 134 CYS L 193 1555 1555 2.06 LINK C ASP H 100G N TYS H 100H 1555 1555 1.33 LINK C TYS H 100H N TYS H 100I 1555 1555 1.33 LINK C TYS H 100I N ASP H 100J 1555 1555 1.32 LINK ND2 ASN L 26 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.43 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.43 CISPEP 1 GLY H 133 GLY H 134 0 0.59 CISPEP 2 PHE H 146 PRO H 147 0 -8.57 CISPEP 3 GLU H 148 PRO H 149 0 -3.56 CISPEP 4 PRO H 213 LYS H 214 0 12.51 CISPEP 5 TYR L 140 PRO L 141 0 0.19 CRYST1 77.016 77.027 85.227 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012984 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011733 0.00000