HEADER OXIDOREDUCTASE 17-SEP-15 5DT9 TITLE CRYSTAL STRUCTURE OF A PUTATIVE D-ERYTHRONATE-4-PHOSPHATE TITLE 2 DEHYDROGENASE FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.290; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 SOURCE 3 / EL TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: PDXB, VC_2108; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCPD KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CSGID, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 3 INFECTIOUS DISEASES, NAD BINDING, DEHYDROGENASE, ERYTHRONATE-4- KEYWDS 4 PHOSPHATE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 27-SEP-23 5DT9 1 REMARK REVDAT 1 30-SEP-15 5DT9 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE D-ERYTHRONATE-4-PHOSPHATE JRNL TITL 2 DEHYDROGENASE FROM VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 17063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.7494 - 2.6635 0.00 0 0 0.2765 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3084 REMARK 3 ANGLE : 1.385 4201 REMARK 3 CHIRALITY : 0.038 477 REMARK 3 PLANARITY : 0.003 533 REMARK 3 DIHEDRAL : 13.404 1126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:95) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7223 56.9450 6.3211 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.3109 REMARK 3 T33: 0.5309 T12: -0.0156 REMARK 3 T13: 0.0419 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 5.8577 L22: 3.3093 REMARK 3 L33: 5.5285 L12: -0.1396 REMARK 3 L13: -1.3431 L23: -0.1932 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.2479 S13: 0.0245 REMARK 3 S21: 0.0410 S22: -0.1034 S23: 0.2809 REMARK 3 S31: -0.0670 S32: -0.0658 S33: 0.1271 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 96:272) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1408 47.4897 16.7691 REMARK 3 T TENSOR REMARK 3 T11: 0.4265 T22: 0.4694 REMARK 3 T33: 0.4937 T12: 0.1537 REMARK 3 T13: -0.0589 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 2.8140 L22: 2.9459 REMARK 3 L33: 1.7735 L12: 0.0087 REMARK 3 L13: 0.4894 L23: -0.1373 REMARK 3 S TENSOR REMARK 3 S11: -0.1744 S12: -0.5261 S13: 0.2480 REMARK 3 S21: 0.4658 S22: 0.1260 S23: -0.2017 REMARK 3 S31: -0.0052 S32: 0.1068 S33: 0.0391 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 273:350) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9471 39.0995 3.0575 REMARK 3 T TENSOR REMARK 3 T11: 0.3588 T22: 0.3816 REMARK 3 T33: 0.4815 T12: 0.0590 REMARK 3 T13: -0.0370 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.9887 L22: 2.0768 REMARK 3 L33: 0.5577 L12: -1.8052 REMARK 3 L13: -0.5114 L23: 0.4893 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: -0.0030 S13: -0.5643 REMARK 3 S21: 0.0617 S22: 0.0174 S23: 0.2182 REMARK 3 S31: 0.1721 S32: 0.0892 S33: 0.0712 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 351:382) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2221 26.8920 8.7609 REMARK 3 T TENSOR REMARK 3 T11: 0.4771 T22: 0.5413 REMARK 3 T33: 0.6261 T12: 0.1223 REMARK 3 T13: 0.1225 T23: 0.0611 REMARK 3 L TENSOR REMARK 3 L11: 3.1114 L22: 6.4534 REMARK 3 L33: 4.5890 L12: 0.6850 REMARK 3 L13: -0.5645 L23: -1.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.2359 S12: -0.2665 S13: -0.4758 REMARK 3 S21: 0.1718 S22: 0.1735 S23: 0.6499 REMARK 3 S31: 0.6881 S32: -0.4596 S33: 0.0915 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX PHENIX.PHASER REMARK 200 STARTING MODEL: 3OET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1M HEPES PH REMARK 280 7.5, 2% PEG400, 1 MM GLUTAMIC ACID, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.01550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 72.88750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.88750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.52325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.88750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 72.88750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.50775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 72.88750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.88750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.52325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 72.88750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.88750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.50775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.01550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -269.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 645 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 383 REMARK 465 GLU A 384 REMARK 465 PRO A 385 REMARK 465 THR A 386 REMARK 465 ILE A 387 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 153 O3B NAD A 401 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 50 -153.64 -110.53 REMARK 500 MET A 76 28.51 -150.65 REMARK 500 ALA A 93 -160.14 -110.09 REMARK 500 ALA A 131 50.62 -109.29 REMARK 500 ASP A 153 80.38 -165.68 REMARK 500 HIS A 181 51.03 -146.17 REMARK 500 ASP A 197 -166.72 -102.16 REMARK 500 ALA A 214 -87.76 -87.87 REMARK 500 ARG A 354 -149.32 -109.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 413 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP90773 RELATED DB: TARGETTRACK DBREF 5DT9 A 7 387 UNP Q9KQ92 PDXB_VIBCH 1 381 SEQADV 5DT9 MET A 1 UNP Q9KQ92 EXPRESSION TAG SEQADV 5DT9 PRO A 2 UNP Q9KQ92 EXPRESSION TAG SEQADV 5DT9 GLN A 3 UNP Q9KQ92 EXPRESSION TAG SEQADV 5DT9 ILE A 4 UNP Q9KQ92 EXPRESSION TAG SEQADV 5DT9 PRO A 5 UNP Q9KQ92 EXPRESSION TAG SEQADV 5DT9 THR A 6 UNP Q9KQ92 EXPRESSION TAG SEQRES 1 A 387 MET PRO GLN ILE PRO THR MET LYS ILE LEU ILE ASP GLU SEQRES 2 A 387 ASN MET PRO TYR ALA GLN ALA LEU PHE SER GLN LEU GLY SEQRES 3 A 387 GLU VAL ILE LEU LYS PRO GLY ARG THR LEU THR ALA ASP SEQRES 4 A 387 ASP LEU ILE ASP VAL ASP ALA LEU MET ILE ARG SER VAL SEQRES 5 A 387 THR LYS VAL ASN ASP ALA LEU LEU ALA LYS ALA ASN ARG SEQRES 6 A 387 LEU LYS PHE VAL GLY THR ALA THR ALA GLY MET ASP HIS SEQRES 7 A 387 VAL ASP GLN ALA LEU LEU ARG GLU ARG GLY ILE PHE PHE SEQRES 8 A 387 THR ALA ALA PRO GLY CYS ASN LYS VAL GLY VAL ALA GLU SEQRES 9 A 387 TYR VAL PHE SER VAL LEU MET VAL LEU ALA GLN GLN GLN SEQRES 10 A 387 GLY PHE SER VAL PHE ASP LYS THR VAL GLY ILE ILE GLY SEQRES 11 A 387 ALA GLY GLN VAL GLY SER TYR LEU ALA LYS CYS LEU SER SEQRES 12 A 387 GLY ILE GLY MET LYS VAL LEU LEU ASN ASP PRO PRO LYS SEQRES 13 A 387 GLN ALA GLN GLY ASP GLU ARG GLU PHE THR GLU LEU GLU SEQRES 14 A 387 THR LEU LEU LYS GLN ALA ASP VAL ILE THR LEU HIS THR SEQRES 15 A 387 PRO ILE THR ARG GLY GLY GLU TRP PRO THR HIS HIS LEU SEQRES 16 A 387 ILE ASP ALA ALA ILE LEU GLU GLN LEU ARG SER ASP GLN SEQRES 17 A 387 ILE LEU ILE ASN ALA ALA ARG GLY PRO VAL VAL ASP ASN SEQRES 18 A 387 ALA ALA LEU LYS ALA ARG LEU GLN GLN GLY ASP GLY PHE SEQRES 19 A 387 THR ALA VAL LEU ASP VAL PHE GLU PHE GLU PRO GLN VAL SEQRES 20 A 387 ASP MET GLU LEU LEU PRO LEU LEU ALA PHE ALA THR PRO SEQRES 21 A 387 HIS ILE ALA GLY TYR GLY LEU GLU GLY LYS ALA ARG GLY SEQRES 22 A 387 THR THR MET ILE PHE ASN SER TYR CYS GLU PHE LEU GLY SEQRES 23 A 387 SER ALA HIS CYS ALA ASN PRO ALA SER LEU LEU PRO LYS SEQRES 24 A 387 ALA PRO VAL PRO LYS VAL TYR LEU GLU ARG ALA TRP ASP SEQRES 25 A 387 GLU GLU THR LEU ARG THR LEU THR GLN ILE ILE TYR ASP SEQRES 26 A 387 VAL ARG LYS ASP ASP ALA GLN PHE ARG ARG GLU ILE HIS SEQRES 27 A 387 GLN PRO GLY ALA PHE ASP LEU MET ARG LYS HIS TYR TRP SEQRES 28 A 387 ASP ARG ARG GLU TYR SER ALA VAL THR LEU ALA GLY GLY SEQRES 29 A 387 ALA ASP CYS HIS LEU ALA PRO LEU ALA LYS LEU GLY PHE SEQRES 30 A 387 GLN VAL GLU VAL CYS ASP GLU PRO THR ILE HET NAD A 401 44 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET CL A 412 1 HET CL A 413 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 SO4 10(O4 S 2-) FORMUL 13 CL 2(CL 1-) FORMUL 15 HOH *154(H2 O) HELIX 1 AA1 TYR A 17 SER A 23 1 7 HELIX 2 AA2 PRO A 32 LEU A 36 5 5 HELIX 3 AA3 THR A 37 ILE A 42 5 6 HELIX 4 AA4 ASP A 80 ARG A 87 1 8 HELIX 5 AA5 ASN A 98 GLY A 118 1 21 HELIX 6 AA6 SER A 120 LYS A 124 5 5 HELIX 7 AA7 GLY A 132 ILE A 145 1 14 HELIX 8 AA8 ASP A 153 GLY A 160 1 8 HELIX 9 AA9 GLU A 167 ALA A 175 1 9 HELIX 10 AB1 ASP A 197 GLU A 202 1 6 HELIX 11 AB2 ARG A 215 VAL A 219 5 5 HELIX 12 AB3 ASP A 220 GLN A 229 1 10 HELIX 13 AB4 LEU A 251 LEU A 255 5 5 HELIX 14 AB5 GLY A 266 GLY A 286 1 21 HELIX 15 AB6 ASN A 292 LEU A 297 1 6 HELIX 16 AB7 ASP A 312 TYR A 324 1 13 HELIX 17 AB8 ASP A 325 ILE A 337 1 13 HELIX 18 AB9 GLY A 341 HIS A 349 1 9 HELIX 19 AC1 GLU A 355 ALA A 358 5 4 HELIX 20 AC2 LEU A 369 GLY A 376 1 8 SHEET 1 AA1 5 GLY A 26 LYS A 31 0 SHEET 2 AA1 5 MET A 7 ASP A 12 1 N ILE A 9 O GLU A 27 SHEET 3 AA1 5 ALA A 46 ILE A 49 1 O MET A 48 N LEU A 10 SHEET 4 AA1 5 PHE A 68 THR A 71 1 O GLY A 70 N LEU A 47 SHEET 5 AA1 5 PHE A 90 THR A 92 1 O PHE A 90 N VAL A 69 SHEET 1 AA2 6 VAL A 149 ASN A 152 0 SHEET 2 AA2 6 VAL A 126 ILE A 129 1 N ILE A 128 O LEU A 150 SHEET 3 AA2 6 VAL A 177 LEU A 180 1 O VAL A 177 N GLY A 127 SHEET 4 AA2 6 ILE A 209 ASN A 212 1 O ILE A 211 N ILE A 178 SHEET 5 AA2 6 THR A 235 LEU A 238 1 O THR A 235 N LEU A 210 SHEET 6 AA2 6 PHE A 257 ALA A 258 1 O PHE A 257 N LEU A 238 SHEET 1 AA3 3 LYS A 304 TYR A 306 0 SHEET 2 AA3 3 THR A 360 GLY A 363 1 O ALA A 362 N VAL A 305 SHEET 3 AA3 3 GLN A 378 VAL A 381 1 O GLN A 378 N LEU A 361 CISPEP 1 GLU A 244 PRO A 245 0 6.14 SITE 1 AC1 21 ASN A 98 GLY A 130 ALA A 131 GLY A 132 SITE 2 AC1 21 GLN A 133 VAL A 134 ASP A 153 PRO A 154 SITE 3 AC1 21 LYS A 156 HIS A 181 THR A 182 PRO A 183 SITE 4 AC1 21 TRP A 190 THR A 192 ALA A 213 ALA A 214 SITE 5 AC1 21 ARG A 215 ASP A 239 HIS A 261 ALA A 263 SITE 6 AC1 21 GLY A 264 SITE 1 AC2 3 ARG A 65 HIS A 349 HOH A 518 SITE 1 AC3 3 ARG A 34 ARG A 50 LYS A 67 SITE 1 AC4 5 ARG A 50 SER A 51 THR A 73 LYS A 270 SITE 2 AC4 5 HOH A 568 SITE 1 AC5 5 VAL A 79 ASP A 80 GLN A 81 ALA A 82 SITE 2 AC5 5 HOH A 548 SITE 1 AC6 4 ASN A 152 PRO A 154 GLU A 167 LEU A 168 SITE 1 AC7 4 ILE A 184 THR A 185 ARG A 186 GLY A 187 SITE 1 AC8 2 ARG A 272 PRO A 293 SITE 1 AC9 3 ASN A 14 ASN A 64 ARG A 65 SITE 1 AD1 3 ARG A 215 GLY A 216 GLU A 244 SITE 1 AD2 4 ALA A 365 HIS A 368 LEU A 369 ALA A 370 SITE 1 AD3 2 TYR A 17 ALA A 20 SITE 1 AD4 1 ASP A 77 CRYST1 145.775 145.775 62.031 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016121 0.00000