HEADER MEMBRANE PROTEIN 17-SEP-15 5DTB TITLE CRYSTAL STRUCTURE OF THE DROSOPHILA CG3822 KAIR1D LIGAND BINDING TITLE 2 DOMAIN COMPLEX WITH GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG3822; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 411-527; UNP RESIDUES 650-794; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG3822, DMEL_CG3822; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3) KEYWDS MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.DHARKAR,M.L.MAYER REVDAT 3 27-SEP-23 5DTB 1 REMARK REVDAT 2 21-DEC-16 5DTB 1 JRNL REVDAT 1 28-SEP-16 5DTB 0 JRNL AUTH Y.LI,P.DHARKAR,T.H.HAN,M.SERPE,C.H.LEE,M.L.MAYER JRNL TITL NOVEL FUNCTIONAL PROPERTIES OF DROSOPHILA CNS GLUTAMATE JRNL TITL 2 RECEPTORS. JRNL REF NEURON V. 92 1036 2016 JRNL REFN ISSN 1097-4199 JRNL PMID 27889096 JRNL DOI 10.1016/J.NEURON.2016.10.058 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2124) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 61148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8046 - 5.1568 0.99 2936 145 0.1799 0.1765 REMARK 3 2 5.1568 - 4.0965 0.99 2751 174 0.1318 0.1581 REMARK 3 3 4.0965 - 3.5797 0.99 2705 167 0.1549 0.1825 REMARK 3 4 3.5797 - 3.2528 0.99 2692 141 0.1682 0.1930 REMARK 3 5 3.2528 - 3.0199 0.99 2693 129 0.1794 0.2273 REMARK 3 6 3.0199 - 2.8420 0.99 2664 166 0.1724 0.2120 REMARK 3 7 2.8420 - 2.6998 0.99 2652 140 0.1702 0.2421 REMARK 3 8 2.6998 - 2.5823 0.98 2639 137 0.1613 0.1877 REMARK 3 9 2.5823 - 2.4830 0.98 2638 137 0.1563 0.1886 REMARK 3 10 2.4830 - 2.3973 0.98 2656 132 0.1551 0.1824 REMARK 3 11 2.3973 - 2.3224 0.98 2624 144 0.1497 0.2034 REMARK 3 12 2.3224 - 2.2560 0.98 2602 118 0.1454 0.2076 REMARK 3 13 2.2560 - 2.1967 0.98 2642 128 0.1498 0.1827 REMARK 3 14 2.1967 - 2.1431 0.98 2607 128 0.1492 0.2160 REMARK 3 15 2.1431 - 2.0944 0.97 2606 127 0.1573 0.1735 REMARK 3 16 2.0944 - 2.0498 0.97 2611 111 0.1578 0.2016 REMARK 3 17 2.0498 - 2.0088 0.97 2590 146 0.1568 0.2032 REMARK 3 18 2.0088 - 1.9709 0.97 2594 124 0.1630 0.2351 REMARK 3 19 1.9709 - 1.9357 0.97 2572 140 0.1720 0.2351 REMARK 3 20 1.9357 - 1.9029 0.97 2540 144 0.1875 0.2228 REMARK 3 21 1.9029 - 1.8722 0.97 2566 155 0.1971 0.2337 REMARK 3 22 1.8722 - 1.8434 0.94 2490 145 0.2139 0.2633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4289 REMARK 3 ANGLE : 1.007 5773 REMARK 3 CHIRALITY : 0.054 632 REMARK 3 PLANARITY : 0.007 737 REMARK 3 DIHEDRAL : 11.588 2607 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:44) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3555 5.9499 9.2663 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.2337 REMARK 3 T33: 0.2407 T12: -0.0637 REMARK 3 T13: 0.0089 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.3469 L22: 0.3338 REMARK 3 L33: 0.2058 L12: -0.1853 REMARK 3 L13: -0.2497 L23: 0.0895 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.1825 S13: -0.0173 REMARK 3 S21: 0.1772 S22: -0.0901 S23: 0.0066 REMARK 3 S31: 0.2290 S32: -0.0833 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 45:87) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1596 18.9396 12.0204 REMARK 3 T TENSOR REMARK 3 T11: 0.3097 T22: 0.2953 REMARK 3 T33: 0.2404 T12: -0.0608 REMARK 3 T13: 0.0305 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.3261 L22: 0.4997 REMARK 3 L33: 0.8598 L12: 0.4626 REMARK 3 L13: -0.0476 L23: -0.2486 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: -0.2788 S13: -0.0224 REMARK 3 S21: 0.4615 S22: -0.2487 S23: 0.0952 REMARK 3 S31: -0.0685 S32: -0.1384 S33: -0.0090 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 88:151) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2666 21.2289 -7.6105 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.2181 REMARK 3 T33: 0.2471 T12: 0.0228 REMARK 3 T13: 0.0033 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.3334 L22: 0.8352 REMARK 3 L33: 0.3635 L12: 0.3486 REMARK 3 L13: -0.0199 L23: 0.1346 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: -0.0333 S13: 0.0663 REMARK 3 S21: -0.0369 S22: -0.1001 S23: 0.1038 REMARK 3 S31: -0.0488 S32: -0.1112 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 152:170) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9438 28.8550 -11.9501 REMARK 3 T TENSOR REMARK 3 T11: 0.3394 T22: 0.3387 REMARK 3 T33: 0.4025 T12: 0.1182 REMARK 3 T13: -0.0713 T23: -0.0658 REMARK 3 L TENSOR REMARK 3 L11: 0.2188 L22: 0.1077 REMARK 3 L33: 0.1102 L12: 0.0244 REMARK 3 L13: 0.0375 L23: -0.1343 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.0881 S13: 0.0821 REMARK 3 S21: -0.0217 S22: -0.1061 S23: 0.1696 REMARK 3 S31: -0.6130 S32: -0.3780 S33: -0.0076 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 171:232) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8897 14.4830 -7.5065 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2076 REMARK 3 T33: 0.2164 T12: -0.0284 REMARK 3 T13: 0.0121 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.4707 L22: 0.3731 REMARK 3 L33: 1.0725 L12: 0.1032 REMARK 3 L13: 0.4564 L23: 0.1655 REMARK 3 S TENSOR REMARK 3 S11: 0.0965 S12: -0.0601 S13: -0.0302 REMARK 3 S21: 0.0312 S22: -0.0956 S23: -0.0163 REMARK 3 S31: 0.1016 S32: -0.1109 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 233:268) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9229 10.3634 -1.5184 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.2451 REMARK 3 T33: 0.2569 T12: 0.0412 REMARK 3 T13: 0.0251 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.8393 L22: 0.4343 REMARK 3 L33: 0.1853 L12: 0.2335 REMARK 3 L13: -0.1662 L23: -0.3270 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: 0.0067 S13: -0.0142 REMARK 3 S21: 0.0271 S22: -0.1514 S23: -0.0473 REMARK 3 S31: 0.2602 S32: 0.1881 S33: -0.0046 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 6:68) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6481 43.4277 -8.8373 REMARK 3 T TENSOR REMARK 3 T11: 0.2701 T22: 0.2006 REMARK 3 T33: 0.2378 T12: -0.0441 REMARK 3 T13: 0.0303 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.4933 L22: 0.5775 REMARK 3 L33: 0.7200 L12: -0.0599 REMARK 3 L13: -0.1199 L23: -0.6484 REMARK 3 S TENSOR REMARK 3 S11: 0.0829 S12: -0.0416 S13: 0.0999 REMARK 3 S21: 0.1299 S22: -0.0853 S23: 0.0629 REMARK 3 S31: -0.2727 S32: 0.2101 S33: 0.0010 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 69:80) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0052 29.6163 2.3870 REMARK 3 T TENSOR REMARK 3 T11: 0.3055 T22: 0.4358 REMARK 3 T33: 0.3834 T12: -0.0405 REMARK 3 T13: -0.1085 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 0.0565 L22: 0.0276 REMARK 3 L33: 0.4610 L12: -0.0351 REMARK 3 L13: -0.1547 L23: 0.0933 REMARK 3 S TENSOR REMARK 3 S11: 0.2711 S12: -0.2180 S13: 0.0069 REMARK 3 S21: 0.2623 S22: -0.1194 S23: -0.2898 REMARK 3 S31: -0.2103 S32: 0.1864 S33: 0.0247 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 81:140) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2093 23.6931 -10.4414 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.2232 REMARK 3 T33: 0.2172 T12: 0.0332 REMARK 3 T13: 0.0181 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.5119 L22: 0.9852 REMARK 3 L33: 0.7018 L12: 0.2385 REMARK 3 L13: -0.4069 L23: -0.4401 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.1332 S13: -0.0994 REMARK 3 S21: -0.0596 S22: -0.1447 S23: -0.0319 REMARK 3 S31: 0.1352 S32: 0.1394 S33: -0.1126 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 141:170) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1011 14.7487 -10.5173 REMARK 3 T TENSOR REMARK 3 T11: 0.3305 T22: 0.3560 REMARK 3 T33: 0.3252 T12: 0.1632 REMARK 3 T13: 0.0835 T23: 0.1271 REMARK 3 L TENSOR REMARK 3 L11: 0.2821 L22: 0.1204 REMARK 3 L33: 0.2817 L12: -0.0339 REMARK 3 L13: -0.0444 L23: -0.1249 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: -0.2504 S13: 0.0178 REMARK 3 S21: 0.0966 S22: -0.0744 S23: -0.1620 REMARK 3 S31: 0.5336 S32: 0.4517 S33: -0.0667 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 171:229) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7539 25.2573 -18.6197 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.1987 REMARK 3 T33: 0.2004 T12: 0.0279 REMARK 3 T13: 0.0328 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.7528 L22: 0.4550 REMARK 3 L33: 0.5593 L12: -0.1968 REMARK 3 L13: -0.4899 L23: -0.1180 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0195 S13: -0.0223 REMARK 3 S21: -0.1070 S22: -0.1068 S23: -0.0438 REMARK 3 S31: 0.1571 S32: 0.1223 S33: -0.0190 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 230:268) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3848 35.1561 -11.3613 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.2287 REMARK 3 T33: 0.2703 T12: 0.0050 REMARK 3 T13: 0.0034 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.7409 L22: 0.4676 REMARK 3 L33: 0.2037 L12: 0.1441 REMARK 3 L13: -0.1581 L23: -0.2328 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.0225 S13: 0.0430 REMARK 3 S21: -0.0236 S22: -0.0636 S23: 0.1374 REMARK 3 S31: -0.1063 S32: -0.0402 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8-9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUFFER 150 NACL 10 TRIS, 2 GLU, 1 EDTA REMARK 280 RESERVOIR 10% PEG 8K 0.1 BICINE PH 9, 2% DIOXANE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.67050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.85200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.85200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.50575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.85200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.85200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.83525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.85200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.85200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 137.50575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.85200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.85200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.83525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.67050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 LEU B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 55 O HOH B 401 1.53 REMARK 500 HZ3 LYS A 6 O HOH A 402 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH B 412 7455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -168.90 57.08 REMARK 500 ASN A 7 -168.90 58.74 REMARK 500 LYS A 8 148.44 73.05 REMARK 500 ASN A 76 -166.67 -126.35 REMARK 500 ARG A 170 -99.00 -70.54 REMARK 500 ASN B 76 -166.93 -126.49 REMARK 500 ALA B 92 -177.84 -171.10 REMARK 500 GLU B 260 -62.52 -106.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 673 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 674 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 101 O REMARK 620 2 GLU B 101 OE2 95.6 REMARK 620 3 VAL B 104 O 82.3 92.0 REMARK 620 4 ASP B 105 OD1 168.0 94.6 91.1 REMARK 620 5 HOH B 589 O 87.0 172.1 95.7 83.7 REMARK 620 6 HOH B 593 O 89.1 96.0 168.7 96.1 76.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DT6 RELATED DB: PDB REMARK 900 DROSOPHILA GLUR1A LBD GLUTAMATE COMPLEX REMARK 900 RELATED ID: 4WXJ RELATED DB: PDB REMARK 900 DROSOPHILA GLURIIB GLUTAMATE COMPLEX DBREF 5DTB A 3 119 UNP Q9VDH5 Q9VDH5_DROME 411 527 DBREF 5DTB A 124 268 UNP Q9VDH5 Q9VDH5_DROME 650 794 DBREF 5DTB B 3 119 UNP Q9VDH5 Q9VDH5_DROME 411 527 DBREF 5DTB B 124 268 UNP Q9VDH5 Q9VDH5_DROME 650 794 SEQADV 5DTB SER A 2 UNP Q9VDH5 EXPRESSION TAG SEQADV 5DTB ARG A 120 UNP Q9VDH5 LINKER SEQADV 5DTB LYS A 121 UNP Q9VDH5 LINKER SEQADV 5DTB GLY A 122 UNP Q9VDH5 LINKER SEQADV 5DTB THR A 123 UNP Q9VDH5 LINKER SEQADV 5DTB SER B 2 UNP Q9VDH5 EXPRESSION TAG SEQADV 5DTB ARG B 120 UNP Q9VDH5 LINKER SEQADV 5DTB LYS B 121 UNP Q9VDH5 LINKER SEQADV 5DTB GLY B 122 UNP Q9VDH5 LINKER SEQADV 5DTB THR B 123 UNP Q9VDH5 LINKER SEQRES 1 A 267 SER ALA ASN LEU LYS ASN LYS THR LEU VAL VAL THR THR SEQRES 2 A 267 ILE LEU SER ASN PRO TYR CYS MET ARG LYS GLU SER ALA SEQRES 3 A 267 ILE PRO LEU SER GLY ASN ASP GLN PHE GLU GLY TYR ALA SEQRES 4 A 267 VAL ASP LEU ILE HIS GLU ILE SER LYS SER LEU GLY PHE SEQRES 5 A 267 ASN TYR LYS ILE GLN LEU VAL PRO ASP GLY SER TYR GLY SEQRES 6 A 267 SER LEU ASN LYS LEU THR GLY GLU TRP ASN GLY MET ILE SEQRES 7 A 267 ARG GLU LEU LEU GLU GLN ARG ALA ASP LEU ALA ILE ALA SEQRES 8 A 267 ASP LEU THR ILE THR PHE GLU ARG GLU GLN ALA VAL ASP SEQRES 9 A 267 PHE THR THR PRO PHE MET ASN LEU GLY VAL SER ILE LEU SEQRES 10 A 267 TYR ARG LYS GLY THR PRO ILE GLU SER ALA GLU ASP LEU SEQRES 11 A 267 ALA LYS GLN THR ARG ILE LYS TYR GLY ALA LEU LYS GLY SEQRES 12 A 267 GLY SER THR ALA ALA PHE PHE ARG ASP SER LYS ILE SER SEQRES 13 A 267 THR TYR GLN ARG MET TRP SER PHE MET GLU SER ALA ARG SEQRES 14 A 267 PRO SER VAL PHE THR ALA SER ASN GLY GLU GLY VAL GLU SEQRES 15 A 267 ARG VAL ALA LYS GLY LYS GLY SER TYR ALA PHE LEU MET SEQRES 16 A 267 GLU SER THR SER ILE GLU TYR VAL THR GLU ARG ASN CYS SEQRES 17 A 267 GLU LEU THR GLN VAL GLY GLY MET LEU ASP THR LYS SER SEQRES 18 A 267 TYR GLY ILE ALA THR PRO PRO ASN SER PRO TYR ARG THR SEQRES 19 A 267 ALA ILE ASN SER VAL ILE LEU LYS LEU GLN GLU GLU GLY SEQRES 20 A 267 LYS LEU HIS ILE LEU LYS THR LYS TRP TRP LYS GLU LYS SEQRES 21 A 267 ARG GLY GLY GLY LYS CYS ARG SEQRES 1 B 267 SER ALA ASN LEU LYS ASN LYS THR LEU VAL VAL THR THR SEQRES 2 B 267 ILE LEU SER ASN PRO TYR CYS MET ARG LYS GLU SER ALA SEQRES 3 B 267 ILE PRO LEU SER GLY ASN ASP GLN PHE GLU GLY TYR ALA SEQRES 4 B 267 VAL ASP LEU ILE HIS GLU ILE SER LYS SER LEU GLY PHE SEQRES 5 B 267 ASN TYR LYS ILE GLN LEU VAL PRO ASP GLY SER TYR GLY SEQRES 6 B 267 SER LEU ASN LYS LEU THR GLY GLU TRP ASN GLY MET ILE SEQRES 7 B 267 ARG GLU LEU LEU GLU GLN ARG ALA ASP LEU ALA ILE ALA SEQRES 8 B 267 ASP LEU THR ILE THR PHE GLU ARG GLU GLN ALA VAL ASP SEQRES 9 B 267 PHE THR THR PRO PHE MET ASN LEU GLY VAL SER ILE LEU SEQRES 10 B 267 TYR ARG LYS GLY THR PRO ILE GLU SER ALA GLU ASP LEU SEQRES 11 B 267 ALA LYS GLN THR ARG ILE LYS TYR GLY ALA LEU LYS GLY SEQRES 12 B 267 GLY SER THR ALA ALA PHE PHE ARG ASP SER LYS ILE SER SEQRES 13 B 267 THR TYR GLN ARG MET TRP SER PHE MET GLU SER ALA ARG SEQRES 14 B 267 PRO SER VAL PHE THR ALA SER ASN GLY GLU GLY VAL GLU SEQRES 15 B 267 ARG VAL ALA LYS GLY LYS GLY SER TYR ALA PHE LEU MET SEQRES 16 B 267 GLU SER THR SER ILE GLU TYR VAL THR GLU ARG ASN CYS SEQRES 17 B 267 GLU LEU THR GLN VAL GLY GLY MET LEU ASP THR LYS SER SEQRES 18 B 267 TYR GLY ILE ALA THR PRO PRO ASN SER PRO TYR ARG THR SEQRES 19 B 267 ALA ILE ASN SER VAL ILE LEU LYS LEU GLN GLU GLU GLY SEQRES 20 B 267 LYS LEU HIS ILE LEU LYS THR LYS TRP TRP LYS GLU LYS SEQRES 21 B 267 ARG GLY GLY GLY LYS CYS ARG HET GLU A 301 18 HET GOL A 302 14 HET GLU B 301 15 HET NA B 302 1 HET GOL B 303 14 HETNAM GLU GLUTAMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 NA NA 1+ FORMUL 8 HOH *526(H2 O) HELIX 1 AA1 SER A 31 ASP A 34 5 4 HELIX 2 AA2 GLY A 38 GLY A 52 1 15 HELIX 3 AA3 ASN A 76 GLU A 84 1 9 HELIX 4 AA4 THR A 97 GLN A 102 1 6 HELIX 5 AA5 SER A 127 LYS A 133 1 7 HELIX 6 AA6 GLY A 145 SER A 154 1 10 HELIX 7 AA7 ILE A 156 SER A 168 1 13 HELIX 8 AA8 SER A 177 LYS A 189 1 13 HELIX 9 AA9 SER A 198 GLU A 206 1 9 HELIX 10 AB1 TYR A 233 GLU A 247 1 15 HELIX 11 AB2 GLY A 248 GLU A 260 1 13 HELIX 12 AB3 SER B 31 ASP B 34 5 4 HELIX 13 AB4 GLY B 38 GLY B 52 1 15 HELIX 14 AB5 ASN B 76 GLU B 84 1 9 HELIX 15 AB6 THR B 97 GLN B 102 1 6 HELIX 16 AB7 SER B 127 LYS B 133 1 7 HELIX 17 AB8 GLY B 145 SER B 154 1 10 HELIX 18 AB9 ILE B 156 ALA B 169 1 14 HELIX 19 AC1 SER B 177 LYS B 187 1 11 HELIX 20 AC2 SER B 198 GLU B 206 1 9 HELIX 21 AC3 TYR B 233 GLU B 247 1 15 HELIX 22 AC4 GLY B 248 GLU B 260 1 13 HELIX 23 AC5 LYS B 261 GLY B 264 5 4 SHEET 1 AA1 3 ASN A 54 LEU A 59 0 SHEET 2 AA1 3 THR A 9 THR A 14 1 N VAL A 12 O GLN A 58 SHEET 3 AA1 3 LEU A 89 ALA A 90 1 O LEU A 89 N THR A 13 SHEET 1 AA2 2 MET A 22 ARG A 23 0 SHEET 2 AA2 2 PHE A 36 GLU A 37 -1 O GLU A 37 N MET A 22 SHEET 1 AA3 2 ASP A 105 LEU A 113 0 SHEET 2 AA3 2 LYS A 221 THR A 227 -1 O LYS A 221 N LEU A 113 SHEET 1 AA4 4 LYS A 138 GLY A 140 0 SHEET 2 AA4 4 TYR A 192 GLU A 197 1 O LEU A 195 N GLY A 140 SHEET 3 AA4 4 VAL A 115 ARG A 120 -1 N SER A 116 O MET A 196 SHEET 4 AA4 4 LEU A 211 VAL A 214 -1 O THR A 212 N TYR A 119 SHEET 1 AA5 3 ASN B 54 LEU B 59 0 SHEET 2 AA5 3 THR B 9 THR B 14 1 N VAL B 12 O GLN B 58 SHEET 3 AA5 3 LEU B 89 ALA B 90 1 O LEU B 89 N THR B 13 SHEET 1 AA6 2 MET B 22 ARG B 23 0 SHEET 2 AA6 2 PHE B 36 GLU B 37 -1 O GLU B 37 N MET B 22 SHEET 1 AA7 2 LEU B 68 ASN B 69 0 SHEET 2 AA7 2 GLU B 74 TRP B 75 -1 O GLU B 74 N ASN B 69 SHEET 1 AA8 2 ASP B 105 PHE B 106 0 SHEET 2 AA8 2 ALA B 226 THR B 227 -1 O THR B 227 N ASP B 105 SHEET 1 AA9 2 MET B 111 LEU B 113 0 SHEET 2 AA9 2 LYS B 221 TYR B 223 -1 O LYS B 221 N LEU B 113 SHEET 1 AB1 4 LYS B 138 GLY B 140 0 SHEET 2 AB1 4 TYR B 192 GLU B 197 1 O LEU B 195 N GLY B 140 SHEET 3 AB1 4 VAL B 115 ARG B 120 -1 N LEU B 118 O PHE B 194 SHEET 4 AB1 4 LEU B 211 VAL B 214 -1 O THR B 212 N TYR B 119 SSBOND 1 CYS A 209 CYS A 267 1555 1555 2.05 SSBOND 2 CYS B 209 CYS B 267 1555 1555 2.06 LINK O GLU B 101 NA NA B 302 1555 1555 2.21 LINK OE2 GLU B 101 NA NA B 302 1555 1555 2.54 LINK O VAL B 104 NA NA B 302 1555 1555 2.23 LINK OD1 ASP B 105 NA NA B 302 1555 1555 2.39 LINK NA NA B 302 O HOH B 589 1555 1555 2.55 LINK NA NA B 302 O HOH B 593 1555 1555 2.42 CISPEP 1 LYS A 6 ASN A 7 0 -5.70 CISPEP 2 LYS A 6 ASN A 7 0 -6.25 CISPEP 3 ASN A 18 PRO A 19 0 -0.29 CISPEP 4 ASN B 18 PRO B 19 0 -2.22 CISPEP 5 ARG B 170 PRO B 171 0 -1.06 SITE 1 AC1 12 TYR A 65 ASP A 93 LEU A 94 THR A 95 SITE 2 AC1 12 ARG A 100 GLY A 145 SER A 146 THR A 147 SITE 3 AC1 12 GLU A 197 HOH A 438 HOH A 440 HOH A 465 SITE 1 AC2 10 GLY A 66 SER A 67 THR A 97 GLU A 99 SITE 2 AC2 10 ARG A 100 GLY A 144 GLY A 145 SER A 146 SITE 3 AC2 10 ALA A 149 HOH A 450 SITE 1 AC3 13 TYR B 65 ASP B 93 LEU B 94 THR B 95 SITE 2 AC3 13 ARG B 100 LEU B 142 GLY B 145 SER B 146 SITE 3 AC3 13 THR B 147 GLU B 197 HOH B 426 HOH B 470 SITE 4 AC3 13 HOH B 522 SITE 1 AC4 5 GLU B 101 VAL B 104 ASP B 105 HOH B 589 SITE 2 AC4 5 HOH B 593 SITE 1 AC5 11 GLY B 66 SER B 67 THR B 97 GLU B 99 SITE 2 AC5 11 ARG B 100 GLY B 144 GLY B 145 SER B 146 SITE 3 AC5 11 ALA B 149 HOH B 424 HOH B 502 CRYST1 87.704 87.704 183.341 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005454 0.00000