HEADER HYDROLASE INHIBITOR 18-SEP-15 5DU3 TITLE ACTIVE FORM OF HUMAN C1-INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMA PROTEASE C1 INHIBITOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 119-500; COMPND 5 SYNONYM: C1INH,C1 ESTERASE INHIBITOR,C1-INHIBITING FACTOR,SERPIN G1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPING1, C1IN, C1NH; SOURCE 6 EXPRESSION_SYSTEM: ORYCTOLAGUS CUNICULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: RABBIT; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9986 KEYWDS SERINE PROTEASE INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR N.S.PANNU,M.DIJK,J.HOLKERS,P.VOSKAMP,B.M.GIANNETTI,W.J.WATERREUS, AUTHOR 2 H.A.VAN VEEN REVDAT 3 10-JAN-24 5DU3 1 REMARK REVDAT 2 25-JAN-17 5DU3 1 JRNL REVDAT 1 31-AUG-16 5DU3 0 JRNL AUTH M.DIJK,J.HOLKERS,P.VOSKAMP,B.M.GIANNETTI,W.J.WATERREUS, JRNL AUTH 2 H.A.VAN VEEN,N.S.PANNU JRNL TITL HOW DEXTRAN SULFATE AFFECTS C1-INHIBITOR ACTIVITY: A MODEL JRNL TITL 2 FOR POLYSACCHARIDE POTENTIATION. JRNL REF STRUCTURE V. 24 2182 2016 JRNL REFN ISSN 1878-4186 JRNL PMID 27818099 JRNL DOI 10.1016/J.STR.2016.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 1.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6077 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5925 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8244 ; 2.066 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13676 ; 1.628 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 753 ; 7.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;39.451 ;24.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1093 ;14.927 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;20.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 977 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6702 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1336 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3011 ; 2.400 ; 2.385 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3010 ; 2.400 ; 2.384 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3755 ; 3.954 ; 3.549 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3756 ; 3.954 ; 3.550 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3066 ; 2.609 ; 2.691 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3067 ; 2.608 ; 2.692 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4490 ; 4.420 ; 3.902 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6623 ; 6.869 ;18.689 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6591 ; 6.864 ;18.601 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 101 476 B 101 476 43950 0.16 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 475 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1780 67.5780 44.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.3042 REMARK 3 T33: 0.0264 T12: -0.0024 REMARK 3 T13: 0.0261 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.1414 L22: 0.4196 REMARK 3 L33: 1.4637 L12: 0.2201 REMARK 3 L13: 0.2171 L23: 0.3085 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.0066 S13: 0.0474 REMARK 3 S21: 0.0610 S22: -0.0565 S23: 0.0624 REMARK 3 S31: 0.0922 S32: 0.0242 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 475 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3290 77.7690 8.0230 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.2949 REMARK 3 T33: 0.0140 T12: 0.0042 REMARK 3 T13: -0.0202 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.6196 L22: 0.3369 REMARK 3 L33: 1.7729 L12: 0.0379 REMARK 3 L13: -0.1945 L23: 0.0260 REMARK 3 S TENSOR REMARK 3 S11: -0.0920 S12: -0.0690 S13: -0.0498 REMARK 3 S21: -0.1130 S22: -0.0258 S23: 0.0331 REMARK 3 S31: -0.1308 S32: 0.0249 S33: 0.1178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 57.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350 W/V AND 200 MM KF WITH A REMARK 280 CRYSTALLIZATION DROP SIZE OF 1 MICROLITRE AND A PROTEIN CONTENT REMARK 280 OF 70% W/V, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.70500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.70500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 97 REMARK 465 GLY A 98 REMARK 465 SER A 99 REMARK 465 ALA A 478 REMARK 465 THR B 97 REMARK 465 GLY B 98 REMARK 465 SER B 99 REMARK 465 PHE B 100 REMARK 465 ALA B 478 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 439 O REMARK 470 ILE A 440 O REMARK 470 SER A 441 O REMARK 470 SER B 438 O REMARK 470 ALA B 439 O REMARK 470 ILE B 440 O REMARK 470 SER B 441 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 165 C GLU A 165 O 0.162 REMARK 500 GLU A 450 CD GLU A 450 OE1 0.069 REMARK 500 GLU B 165 CG GLU B 165 CD 0.123 REMARK 500 GLU B 165 C GLU B 165 O 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 207 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 282 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 LEU A 459 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG B 227 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 227 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 282 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 142 57.98 -140.23 REMARK 500 GLU A 165 -130.64 54.86 REMARK 500 ASN A 249 48.90 38.61 REMARK 500 ASN A 250 14.82 59.89 REMARK 500 ASP A 262 30.93 -95.78 REMARK 500 LYS A 294 -143.25 64.23 REMARK 500 LYS A 307 47.86 -147.41 REMARK 500 LEU A 405 52.81 -108.49 REMARK 500 THR A 428 -156.93 -110.70 REMARK 500 ILE A 440 -110.79 89.30 REMARK 500 VAL A 442 -64.14 50.32 REMARK 500 GLU B 165 -130.97 55.38 REMARK 500 MET B 288 109.71 -59.40 REMARK 500 LYS B 294 -144.59 60.46 REMARK 500 LYS B 307 53.89 -148.65 REMARK 500 LEU B 405 56.72 -105.34 REMARK 500 THR B 428 -155.22 -107.53 REMARK 500 ALA B 437 172.86 64.78 REMARK 500 ALA B 439 77.28 63.96 REMARK 500 SER B 441 145.79 74.90 REMARK 500 VAL B 442 -36.71 -173.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 5DU3 A 97 478 UNP P05155 IC1_HUMAN 119 500 DBREF 5DU3 B 97 478 UNP P05155 IC1_HUMAN 119 500 SEQRES 1 A 382 THR GLY SER PHE CYS PRO GLY PRO VAL THR LEU CYS SER SEQRES 2 A 382 ASP LEU GLU SER HIS SER THR GLU ALA VAL LEU GLY ASP SEQRES 3 A 382 ALA LEU VAL ASP PHE SER LEU LYS LEU TYR HIS ALA PHE SEQRES 4 A 382 SER ALA MET LYS LYS VAL GLU THR ASN MET ALA PHE SER SEQRES 5 A 382 PRO PHE SER ILE ALA SER LEU LEU THR GLN VAL LEU LEU SEQRES 6 A 382 GLY ALA GLY GLU ASN THR LYS THR ASN LEU GLU SER ILE SEQRES 7 A 382 LEU SER TYR PRO LYS ASP PHE THR CYS VAL HIS GLN ALA SEQRES 8 A 382 LEU LYS GLY PHE THR THR LYS GLY VAL THR SER VAL SER SEQRES 9 A 382 GLN ILE PHE HIS SER PRO ASP LEU ALA ILE ARG ASP THR SEQRES 10 A 382 PHE VAL ASN ALA SER ARG THR LEU TYR SER SER SER PRO SEQRES 11 A 382 ARG VAL LEU SER ASN ASN SER ASP ALA ASN LEU GLU LEU SEQRES 12 A 382 ILE ASN THR TRP VAL ALA LYS ASN THR ASN ASN LYS ILE SEQRES 13 A 382 SER ARG LEU LEU ASP SER LEU PRO SER ASP THR ARG LEU SEQRES 14 A 382 VAL LEU LEU ASN ALA ILE TYR LEU SER ALA LYS TRP LYS SEQRES 15 A 382 THR THR PHE ASP PRO LYS LYS THR ARG MET GLU PRO PHE SEQRES 16 A 382 HIS PHE LYS ASN SER VAL ILE LYS VAL PRO MET MET ASN SEQRES 17 A 382 SER LYS LYS TYR PRO VAL ALA HIS PHE ILE ASP GLN THR SEQRES 18 A 382 LEU LYS ALA LYS VAL GLY GLN LEU GLN LEU SER HIS ASN SEQRES 19 A 382 LEU SER LEU VAL ILE LEU VAL PRO GLN ASN LEU LYS HIS SEQRES 20 A 382 ARG LEU GLU ASP MET GLU GLN ALA LEU SER PRO SER VAL SEQRES 21 A 382 PHE LYS ALA ILE MET GLU LYS LEU GLU MET SER LYS PHE SEQRES 22 A 382 GLN PRO THR LEU LEU THR LEU PRO ARG ILE LYS VAL THR SEQRES 23 A 382 THR SER GLN ASP MET LEU SER ILE MET GLU LYS LEU GLU SEQRES 24 A 382 PHE PHE ASP PHE SER TYR ASP LEU ASN LEU CYS GLY LEU SEQRES 25 A 382 THR GLU ASP PRO ASP LEU GLN VAL SER ALA MET GLN HIS SEQRES 26 A 382 GLN THR VAL LEU GLU LEU THR GLU THR GLY VAL GLU ALA SEQRES 27 A 382 ALA ALA ALA SER ALA ILE SER VAL ALA ARG THR LEU LEU SEQRES 28 A 382 VAL PHE GLU VAL GLN GLN PRO PHE LEU PHE VAL LEU TRP SEQRES 29 A 382 ASP GLN GLN HIS LYS PHE PRO VAL PHE MET GLY ARG VAL SEQRES 30 A 382 TYR ASP PRO ARG ALA SEQRES 1 B 382 THR GLY SER PHE CYS PRO GLY PRO VAL THR LEU CYS SER SEQRES 2 B 382 ASP LEU GLU SER HIS SER THR GLU ALA VAL LEU GLY ASP SEQRES 3 B 382 ALA LEU VAL ASP PHE SER LEU LYS LEU TYR HIS ALA PHE SEQRES 4 B 382 SER ALA MET LYS LYS VAL GLU THR ASN MET ALA PHE SER SEQRES 5 B 382 PRO PHE SER ILE ALA SER LEU LEU THR GLN VAL LEU LEU SEQRES 6 B 382 GLY ALA GLY GLU ASN THR LYS THR ASN LEU GLU SER ILE SEQRES 7 B 382 LEU SER TYR PRO LYS ASP PHE THR CYS VAL HIS GLN ALA SEQRES 8 B 382 LEU LYS GLY PHE THR THR LYS GLY VAL THR SER VAL SER SEQRES 9 B 382 GLN ILE PHE HIS SER PRO ASP LEU ALA ILE ARG ASP THR SEQRES 10 B 382 PHE VAL ASN ALA SER ARG THR LEU TYR SER SER SER PRO SEQRES 11 B 382 ARG VAL LEU SER ASN ASN SER ASP ALA ASN LEU GLU LEU SEQRES 12 B 382 ILE ASN THR TRP VAL ALA LYS ASN THR ASN ASN LYS ILE SEQRES 13 B 382 SER ARG LEU LEU ASP SER LEU PRO SER ASP THR ARG LEU SEQRES 14 B 382 VAL LEU LEU ASN ALA ILE TYR LEU SER ALA LYS TRP LYS SEQRES 15 B 382 THR THR PHE ASP PRO LYS LYS THR ARG MET GLU PRO PHE SEQRES 16 B 382 HIS PHE LYS ASN SER VAL ILE LYS VAL PRO MET MET ASN SEQRES 17 B 382 SER LYS LYS TYR PRO VAL ALA HIS PHE ILE ASP GLN THR SEQRES 18 B 382 LEU LYS ALA LYS VAL GLY GLN LEU GLN LEU SER HIS ASN SEQRES 19 B 382 LEU SER LEU VAL ILE LEU VAL PRO GLN ASN LEU LYS HIS SEQRES 20 B 382 ARG LEU GLU ASP MET GLU GLN ALA LEU SER PRO SER VAL SEQRES 21 B 382 PHE LYS ALA ILE MET GLU LYS LEU GLU MET SER LYS PHE SEQRES 22 B 382 GLN PRO THR LEU LEU THR LEU PRO ARG ILE LYS VAL THR SEQRES 23 B 382 THR SER GLN ASP MET LEU SER ILE MET GLU LYS LEU GLU SEQRES 24 B 382 PHE PHE ASP PHE SER TYR ASP LEU ASN LEU CYS GLY LEU SEQRES 25 B 382 THR GLU ASP PRO ASP LEU GLN VAL SER ALA MET GLN HIS SEQRES 26 B 382 GLN THR VAL LEU GLU LEU THR GLU THR GLY VAL GLU ALA SEQRES 27 B 382 ALA ALA ALA SER ALA ILE SER VAL ALA ARG THR LEU LEU SEQRES 28 B 382 VAL PHE GLU VAL GLN GLN PRO PHE LEU PHE VAL LEU TRP SEQRES 29 B 382 ASP GLN GLN HIS LYS PHE PRO VAL PHE MET GLY ARG VAL SEQRES 30 B 382 TYR ASP PRO ARG ALA FORMUL 3 HOH *151(H2 O) HELIX 1 AA1 SER A 109 THR A 116 1 8 HELIX 2 AA2 THR A 116 LYS A 139 1 24 HELIX 3 AA3 SER A 148 LEU A 161 1 14 HELIX 4 AA4 GLY A 164 SER A 176 1 13 HELIX 5 AA5 CYS A 183 PHE A 191 1 9 HELIX 6 AA6 ARG A 211 SER A 223 1 13 HELIX 7 AA7 ASN A 232 THR A 248 1 17 HELIX 8 AA8 ASP A 282 THR A 286 5 5 HELIX 9 AA9 ARG A 344 LEU A 352 1 9 HELIX 10 AB1 SER A 353 MET A 366 1 14 HELIX 11 AB2 MET A 387 LEU A 394 1 8 HELIX 12 AB3 SER B 109 SER B 115 1 7 HELIX 13 AB4 THR B 116 LYS B 139 1 24 HELIX 14 AB5 SER B 148 LEU B 161 1 14 HELIX 15 AB6 GLY B 164 SER B 176 1 13 HELIX 16 AB7 CYS B 183 PHE B 191 1 9 HELIX 17 AB8 ARG B 211 TYR B 222 1 12 HELIX 18 AB9 ASN B 232 THR B 248 1 17 HELIX 19 AC1 ASP B 282 THR B 286 5 5 HELIX 20 AC2 ARG B 344 LEU B 352 1 9 HELIX 21 AC3 SER B 353 SER B 367 1 15 HELIX 22 AC4 MET B 387 LEU B 394 1 8 SHEET 1 AA1 7 MET A 145 PHE A 147 0 SHEET 2 AA1 7 PHE A 466 VAL A 473 -1 O ARG A 472 N MET A 145 SHEET 3 AA1 7 PHE A 455 ASP A 461 -1 N ASP A 461 O PHE A 466 SHEET 4 AA1 7 LEU A 331 PRO A 338 -1 N VAL A 334 O VAL A 458 SHEET 5 AA1 7 ALA A 320 GLN A 326 -1 N GLY A 323 O ILE A 335 SHEET 6 AA1 7 SER A 296 ASP A 315 -1 N ALA A 311 O GLN A 324 SHEET 7 AA1 7 ARG A 287 PHE A 293 -1 N PHE A 291 O ILE A 298 SHEET 1 AA2 8 MET A 145 PHE A 147 0 SHEET 2 AA2 8 PHE A 466 VAL A 473 -1 O ARG A 472 N MET A 145 SHEET 3 AA2 8 PHE A 455 ASP A 461 -1 N ASP A 461 O PHE A 466 SHEET 4 AA2 8 LEU A 331 PRO A 338 -1 N VAL A 334 O VAL A 458 SHEET 5 AA2 8 ALA A 320 GLN A 326 -1 N GLY A 323 O ILE A 335 SHEET 6 AA2 8 SER A 296 ASP A 315 -1 N ALA A 311 O GLN A 324 SHEET 7 AA2 8 GLN A 370 PRO A 377 -1 O LEU A 376 N MET A 303 SHEET 8 AA2 8 LEU A 447 GLU A 450 1 O LEU A 447 N LEU A 373 SHEET 1 AA3 5 ARG A 227 VAL A 228 0 SHEET 2 AA3 5 VAL A 196 HIS A 204 1 N ILE A 202 O ARG A 227 SHEET 3 AA3 5 LEU A 265 LEU A 273 -1 O ALA A 270 N VAL A 199 SHEET 4 AA3 5 ALA A 418 LEU A 427 1 O GLN A 422 N ILE A 271 SHEET 5 AA3 5 ILE A 379 ASP A 386 -1 N ILE A 379 O LEU A 427 SHEET 1 AA4 2 TRP A 277 THR A 279 0 SHEET 2 AA4 2 GLY A 431 GLU A 433 1 O GLU A 433 N LYS A 278 SHEET 1 AA5 7 MET B 145 PHE B 147 0 SHEET 2 AA5 7 PHE B 466 VAL B 473 -1 O ARG B 472 N MET B 145 SHEET 3 AA5 7 PHE B 455 ASP B 461 -1 N ASP B 461 O PHE B 466 SHEET 4 AA5 7 LEU B 331 PRO B 338 -1 N VAL B 334 O VAL B 458 SHEET 5 AA5 7 ALA B 320 GLN B 326 -1 N GLY B 323 O ILE B 335 SHEET 6 AA5 7 SER B 296 ASP B 315 -1 N ALA B 311 O GLN B 324 SHEET 7 AA5 7 ARG B 287 PHE B 293 -1 N PHE B 291 O ILE B 298 SHEET 1 AA6 8 MET B 145 PHE B 147 0 SHEET 2 AA6 8 PHE B 466 VAL B 473 -1 O ARG B 472 N MET B 145 SHEET 3 AA6 8 PHE B 455 ASP B 461 -1 N ASP B 461 O PHE B 466 SHEET 4 AA6 8 LEU B 331 PRO B 338 -1 N VAL B 334 O VAL B 458 SHEET 5 AA6 8 ALA B 320 GLN B 326 -1 N GLY B 323 O ILE B 335 SHEET 6 AA6 8 SER B 296 ASP B 315 -1 N ALA B 311 O GLN B 324 SHEET 7 AA6 8 GLN B 370 PRO B 377 -1 O LEU B 376 N MET B 303 SHEET 8 AA6 8 LEU B 447 GLU B 450 1 O LEU B 447 N LEU B 373 SHEET 1 AA7 5 ARG B 227 VAL B 228 0 SHEET 2 AA7 5 VAL B 196 HIS B 204 1 N ILE B 202 O ARG B 227 SHEET 3 AA7 5 LEU B 265 LEU B 273 -1 O ALA B 270 N VAL B 199 SHEET 4 AA7 5 ALA B 418 LEU B 427 1 O ALA B 418 N LEU B 267 SHEET 5 AA7 5 ILE B 379 ASP B 386 -1 N ILE B 379 O LEU B 427 SHEET 1 AA8 2 TRP B 277 THR B 279 0 SHEET 2 AA8 2 GLY B 431 GLU B 433 1 O GLU B 433 N LYS B 278 SSBOND 1 CYS A 101 CYS A 406 1555 1555 2.08 SSBOND 2 CYS A 108 CYS A 183 1555 1555 2.10 SSBOND 3 CYS B 101 CYS B 406 1555 1555 2.15 SSBOND 4 CYS B 108 CYS B 183 1555 1555 2.07 CRYST1 57.410 75.380 203.960 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004903 0.00000