HEADER IMMUNE SYSTEM 20-SEP-15 5DUP TITLE INFLUENZA A VIRUS H5 HEMAGGLUTININ GLOBULAR HEAD IN COMPLEX WITH TITLE 2 ANTIBODY AVFLUIGG03 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GLOBULAR HEAD, UNP RESIDUES 61-284; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AVFLUIGG03 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: AVFLUIGG03 LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/ANHUI/1/2005(H5N1)); SOURCE 3 ORGANISM_TAXID: 370810; SOURCE 4 STRAIN: A/ANHUI/1/2005(H5N1); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS INFLUENZA VIRUS, ANTIBODY, COMPLEX, NEUTRALIZE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ZUO,J.SUN,G.WANG,P.ZHOU,X.WANG,L.ZHANG REVDAT 1 16-DEC-15 5DUP 0 JRNL AUTH T.ZUO,J.SUN,G.WANG,L.JIANG,Y.ZUO,D.LI,X.SHI,X.LIU,S.FAN, JRNL AUTH 2 H.REN,H.HU,L.SUN,B.ZHOU,M.LIANG,P.ZHOU,X.WANG,L.ZHANG JRNL TITL COMPREHENSIVE ANALYSIS OF ANTIBODY RECOGNITION IN JRNL TITL 2 CONVALESCENT HUMANS FROM HIGHLY PATHOGENIC AVIAN INFLUENZA JRNL TITL 3 H5N1 INFECTION JRNL REF NAT COMMUN V. 6 8855 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26635249 JRNL DOI 10.1038/NCOMMS9855 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9223 - 5.5426 0.95 2750 129 0.1866 0.2305 REMARK 3 2 5.5426 - 4.4021 0.94 2650 155 0.1563 0.2293 REMARK 3 3 4.4021 - 3.8464 0.95 2677 133 0.1894 0.2656 REMARK 3 4 3.8464 - 3.4951 0.95 2648 137 0.2262 0.2519 REMARK 3 5 3.4951 - 3.2448 0.95 2637 150 0.2565 0.3112 REMARK 3 6 3.2448 - 3.0536 0.94 2644 133 0.3460 0.3924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4822 REMARK 3 ANGLE : 1.352 6547 REMARK 3 CHIRALITY : 0.052 719 REMARK 3 PLANARITY : 0.008 845 REMARK 3 DIHEDRAL : 18.935 1718 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN L REMARK 3 ORIGIN FOR THE GROUP (A): 93.5277 39.1800 12.6077 REMARK 3 T TENSOR REMARK 3 T11: 0.5075 T22: 0.6676 REMARK 3 T33: 0.5922 T12: 0.0394 REMARK 3 T13: 0.0470 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.8968 L22: 1.0509 REMARK 3 L33: 0.5999 L12: -0.2152 REMARK 3 L13: 0.7127 L23: -0.3917 REMARK 3 S TENSOR REMARK 3 S11: 0.1370 S12: 0.1603 S13: -0.1371 REMARK 3 S21: -0.0643 S22: -0.2841 S23: -0.0425 REMARK 3 S31: 0.3643 S32: 0.2208 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): 83.0756 52.9263 22.0091 REMARK 3 T TENSOR REMARK 3 T11: 0.5144 T22: 0.4667 REMARK 3 T33: 0.6262 T12: -0.0579 REMARK 3 T13: 0.0214 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.9311 L22: 0.3925 REMARK 3 L33: 0.9366 L12: -0.1767 REMARK 3 L13: 0.2225 L23: -0.3487 REMARK 3 S TENSOR REMARK 3 S11: -0.1354 S12: -0.0001 S13: -0.0731 REMARK 3 S21: 0.2071 S22: 0.0316 S23: -0.0942 REMARK 3 S31: -0.3500 S32: 0.0817 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 69.3824 71.2305 -18.4556 REMARK 3 T TENSOR REMARK 3 T11: 0.6678 T22: 0.8272 REMARK 3 T33: 0.5742 T12: 0.0942 REMARK 3 T13: -0.0011 T23: 0.1144 REMARK 3 L TENSOR REMARK 3 L11: 2.4583 L22: 2.0217 REMARK 3 L33: 1.9899 L12: -0.5265 REMARK 3 L13: -0.3426 L23: -0.1287 REMARK 3 S TENSOR REMARK 3 S11: 0.3769 S12: 0.5804 S13: 0.0987 REMARK 3 S21: 0.0215 S22: -0.3558 S23: -0.0165 REMARK 3 S31: -0.6148 S32: -0.4033 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16857 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 38.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 20% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 42 REMARK 465 ASP A 43 REMARK 465 PRO A 44 REMARK 465 ASP A 45 REMARK 465 GLY A 46 REMARK 465 VAL A 47 REMARK 465 LYS A 48 REMARK 465 PRO A 49 REMARK 465 LEU A 50 REMARK 465 ILE A 51 REMARK 465 LEU A 52 REMARK 465 GLU A 69 REMARK 465 PHE A 70 REMARK 465 ILE A 71 REMARK 465 ASN A 72 REMARK 465 VAL A 73 REMARK 465 PRO A 74 REMARK 465 GLU A 75 REMARK 465 TRP A 76 REMARK 465 SER A 77 REMARK 465 TYR A 78 REMARK 465 ILE A 79 REMARK 465 VAL A 80 REMARK 465 GLY A 260 REMARK 465 ASP A 261 REMARK 465 SER A 262 REMARK 465 ALA A 263 REMARK 465 ILE A 264 REMARK 465 VAL A 265 REMARK 465 LYS A 266 REMARK 465 SER A 267 REMARK 465 GLU A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 GLY H 53 REMARK 465 ASN H 54 REMARK 465 GLY H 55 REMARK 465 GLY H 56 REMARK 465 SER H 57 REMARK 465 SER H 142 REMARK 465 LYS H 143 REMARK 465 SER H 144 REMARK 465 THR H 145 REMARK 465 SER H 146 REMARK 465 GLY H 147 REMARK 465 GLY H 148 REMARK 465 THR H 149 REMARK 465 ALA H 150 REMARK 465 SER H 202 REMARK 465 LEU H 203 REMARK 465 GLY H 204 REMARK 465 THR H 205 REMARK 465 GLN H 206 REMARK 465 LYS H 228 REMARK 465 SER H 229 REMARK 465 CYS H 230 REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 465 THR H 233 REMARK 465 SER H 234 REMARK 465 GLU L 107 REMARK 465 ILE L 108 REMARK 465 LYS L 109 REMARK 465 GLY L 214 REMARK 465 GLU L 215 REMARK 465 CYS L 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 55 CB CYS A 67 1.23 REMARK 500 O ASN H 113 OH TYR L 93 1.96 REMARK 500 OH TYR H 109 O HIS H 112 2.09 REMARK 500 OG SER H 49 O TYR H 60 2.12 REMARK 500 O HIS A 179 ND2 ASN A 246 2.17 REMARK 500 OD2 ASP L 172 OG1 THR L 174 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 216 C - N - CA ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -93.25 -103.17 REMARK 500 VAL A 57 -71.25 -141.50 REMARK 500 ASN A 64 82.87 37.64 REMARK 500 PRO A 65 -16.30 -46.44 REMARK 500 ALA A 83 -80.90 -61.22 REMARK 500 ASP A 88 -79.51 -101.78 REMARK 500 PRO A 92 -173.62 -65.51 REMARK 500 ILE A 116 -62.47 -128.84 REMARK 500 ALA A 127 -71.29 -76.77 REMARK 500 SER A 129 -69.04 -137.21 REMARK 500 GLN A 192 -20.38 73.10 REMARK 500 THR A 202 -81.08 -122.51 REMARK 500 SER A 203 -64.79 -135.73 REMARK 500 ALA A 214 -69.38 -139.16 REMARK 500 THR A 215 170.15 178.49 REMARK 500 GLU A 251 -63.50 -133.16 REMARK 500 VAL H 48 -62.58 -94.13 REMARK 500 ARG H 88 -90.98 -101.10 REMARK 500 ALA H 89 -60.39 -141.92 REMARK 500 GLU H 90 -9.08 -57.68 REMARK 500 LEU H 111 -65.34 -142.06 REMARK 500 SER H 127 -178.67 177.68 REMARK 500 PRO H 140 -169.71 -77.58 REMARK 500 LEU H 152 176.37 177.71 REMARK 500 PHE H 160 135.49 179.22 REMARK 500 ASN H 169 72.95 44.98 REMARK 500 SER H 170 -6.04 65.23 REMARK 500 VAL H 198 139.37 177.29 REMARK 500 PRO H 216 37.12 -89.79 REMARK 500 LEU L 4 -88.49 -98.79 REMARK 500 ASN L 28 -60.76 -92.61 REMARK 500 PRO L 42 97.46 -64.97 REMARK 500 LEU L 49 -63.68 -102.08 REMARK 500 ASN L 53 -35.46 71.11 REMARK 500 SER L 96 -139.88 56.14 REMARK 500 VAL L 97 -147.74 47.10 REMARK 500 THR L 131 -177.25 -66.30 REMARK 500 ASN L 140 72.55 57.52 REMARK 500 ASN L 154 -9.89 79.71 REMARK 500 SER L 170 -74.74 -57.90 REMARK 500 LYS L 190 -61.80 -137.00 REMARK 500 LEU L 203 -62.19 -136.68 REMARK 500 SER L 204 -131.86 64.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR H 109 GLY H 110 145.85 REMARK 500 GLY H 110 LEU H 111 149.32 REMARK 500 PRO H 216 SER H 217 149.61 REMARK 500 LEU L 4 THR L 5 147.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DUM RELATED DB: PDB REMARK 900 RELATED ID: 5DUR RELATED DB: PDB REMARK 900 RELATED ID: 5DUT RELATED DB: PDB DBREF 5DUP A 45 268 UNP Q1WDM0 Q1WDM0_9INFA 61 284 DBREF 5DUP H 1 234 PDB 5DUP 5DUP 1 234 DBREF 5DUP L 2 216 PDB 5DUP 5DUP 2 216 SEQADV 5DUP ALA A 42 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP ASP A 43 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP PRO A 44 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP HIS A 269 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP HIS A 270 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP HIS A 271 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP HIS A 272 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP HIS A 273 UNP Q1WDM0 EXPRESSION TAG SEQADV 5DUP HIS A 274 UNP Q1WDM0 EXPRESSION TAG SEQRES 1 A 233 ALA ASP PRO ASP GLY VAL LYS PRO LEU ILE LEU ARG ASP SEQRES 2 A 233 CYS SER VAL ALA GLY TRP LEU LEU GLY ASN PRO MET CYS SEQRES 3 A 233 ASP GLU PHE ILE ASN VAL PRO GLU TRP SER TYR ILE VAL SEQRES 4 A 233 GLU LYS ALA ASN PRO ALA ASN ASP LEU CYS TYR PRO GLY SEQRES 5 A 233 ASN PHE ASN ASP TYR GLU GLU LEU LYS HIS LEU LEU SER SEQRES 6 A 233 ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE ILE PRO LYS SEQRES 7 A 233 SER SER TRP SER ASP HIS GLU ALA SER SER GLY VAL SER SEQRES 8 A 233 SER ALA CYS PRO TYR GLN GLY THR PRO SER PHE PHE ARG SEQRES 9 A 233 ASN VAL VAL TRP LEU ILE LYS LYS ASN ASN THR TYR PRO SEQRES 10 A 233 THR ILE LYS ARG SER TYR ASN ASN THR ASN GLN GLU ASP SEQRES 11 A 233 LEU LEU ILE LEU TRP GLY ILE HIS HIS SER ASN ASP ALA SEQRES 12 A 233 ALA GLU GLN THR LYS LEU TYR GLN ASN PRO THR THR TYR SEQRES 13 A 233 ILE SER VAL GLY THR SER THR LEU ASN GLN ARG LEU VAL SEQRES 14 A 233 PRO LYS ILE ALA THR ARG SER LYS VAL ASN GLY GLN SER SEQRES 15 A 233 GLY ARG MET ASP PHE PHE TRP THR ILE LEU LYS PRO ASN SEQRES 16 A 233 ASP ALA ILE ASN PHE GLU SER ASN GLY ASN PHE ILE ALA SEQRES 17 A 233 PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS GLY ASP SER SEQRES 18 A 233 ALA ILE VAL LYS SER GLU HIS HIS HIS HIS HIS HIS SEQRES 1 H 234 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 234 PRO GLY GLY SER LEU ARG VAL SER CYS THR ASN SER GLY SEQRES 3 H 234 PHE THR PHE SER ASN TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 H 234 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA ILE SER SEQRES 5 H 234 GLY ASN GLY GLY SER GLY THR TYR TYR ALA ASP SER VAL SEQRES 6 H 234 LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN SEQRES 7 H 234 THR MET TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP SEQRES 8 H 234 THR ALA VAL TYR TYR CYS VAL ARG ASP ASP SER TYR ASP SEQRES 9 H 234 GLY GLY GLY HIS TYR GLY LEU HIS ASN TRP PHE ASP SER SEQRES 10 H 234 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SER THR SEQRES 11 H 234 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 234 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 234 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 234 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 234 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 234 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 234 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 234 ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS THR SER SEQRES 1 L 215 SER VAL LEU THR GLN PRO PRO SER VAL SER GLY ALA PRO SEQRES 2 L 215 GLY GLN ARG VAL THR ILE SER CYS THR GLY SER SER SER SEQRES 3 L 215 ASN ILE GLY ALA GLY TYR ASP VAL HIS TRP TYR GLN GLN SEQRES 4 L 215 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLY ASN SEQRES 5 L 215 SER ASN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER LYS SER GLY THR SER ALA SER LEU ALA ILE THR GLY SEQRES 7 L 215 LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SER SEQRES 8 L 215 TYR ASP SER SER VAL VAL VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 215 LEU GLU ILE LYS GLY THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS HELIX 1 AA1 VAL A 57 GLY A 63 1 7 HELIX 2 AA2 ASP A 97 SER A 106 1 10 HELIX 3 AA3 PRO A 118 TRP A 122 5 5 HELIX 4 AA4 ASP A 183 TYR A 191 1 9 HELIX 5 AA5 THR H 28 TYR H 32 5 5 HELIX 6 AA6 SER H 170 ALA H 172 5 3 HELIX 7 AA7 LYS H 215 ASN H 218 5 4 HELIX 8 AA8 ASP L 124 GLY L 130 1 7 HELIX 9 AA9 SER L 184 GLU L 189 1 6 SHEET 1 AA1 5 HIS A 110 GLN A 115 0 SHEET 2 AA1 5 TYR A 252 VAL A 257 -1 O ALA A 253 N ILE A 114 SHEET 3 AA1 5 ASP A 171 HIS A 180 -1 N LEU A 173 O TYR A 254 SHEET 4 AA1 5 PHE A 247 PRO A 250 -1 O ILE A 248 N GLY A 177 SHEET 5 AA1 5 VAL A 147 TRP A 149 -1 N VAL A 148 O ALA A 249 SHEET 1 AA2 4 HIS A 110 GLN A 115 0 SHEET 2 AA2 4 TYR A 252 VAL A 257 -1 O ALA A 253 N ILE A 114 SHEET 3 AA2 4 ASP A 171 HIS A 180 -1 N LEU A 173 O TYR A 254 SHEET 4 AA2 4 ARG A 225 LEU A 233 -1 O ARG A 225 N HIS A 180 SHEET 1 AA3 2 SER A 132 TYR A 137 0 SHEET 2 AA3 2 THR A 140 SER A 142 -1 O SER A 142 N CYS A 135 SHEET 1 AA4 4 ARG A 162 ASN A 165 0 SHEET 2 AA4 4 ALA A 238 GLU A 242 -1 O ILE A 239 N TYR A 164 SHEET 3 AA4 4 ILE A 198 GLY A 201 -1 N GLY A 201 O ASN A 240 SHEET 4 AA4 4 ASN A 206 LEU A 209 -1 O LEU A 209 N ILE A 198 SHEET 1 AA5 4 GLN H 3 GLU H 6 0 SHEET 2 AA5 4 GLY H 16 SER H 25 -1 O THR H 23 N LEU H 5 SHEET 3 AA5 4 THR H 79 LEU H 87 -1 O MET H 84 N LEU H 18 SHEET 4 AA5 4 PHE H 69 ASP H 74 -1 N ASP H 74 O THR H 79 SHEET 1 AA6 6 LEU H 11 VAL H 12 0 SHEET 2 AA6 6 THR H 122 VAL H 126 1 O THR H 125 N VAL H 12 SHEET 3 AA6 6 ALA H 93 ASP H 101 -1 N ALA H 93 O VAL H 124 SHEET 4 AA6 6 ALA H 33 GLN H 39 -1 N SER H 35 O VAL H 98 SHEET 5 AA6 6 LEU H 45 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA6 6 TYR H 60 TYR H 61 -1 O TYR H 60 N ALA H 50 SHEET 1 AA7 4 LEU H 11 VAL H 12 0 SHEET 2 AA7 4 THR H 122 VAL H 126 1 O THR H 125 N VAL H 12 SHEET 3 AA7 4 ALA H 93 ASP H 101 -1 N ALA H 93 O VAL H 124 SHEET 4 AA7 4 TRP H 114 TRP H 118 -1 O TRP H 114 N ASP H 101 SHEET 1 AA8 4 SER H 134 LEU H 138 0 SHEET 2 AA8 4 LEU H 152 TYR H 159 -1 O GLY H 153 N LEU H 138 SHEET 3 AA8 4 TYR H 190 VAL H 196 -1 O VAL H 196 N LEU H 152 SHEET 4 AA8 4 HIS H 178 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AA9 3 THR H 165 TRP H 168 0 SHEET 2 AA9 3 TYR H 208 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AA9 3 THR H 219 VAL H 225 -1 O VAL H 221 N VAL H 212 SHEET 1 AB1 3 VAL L 18 CYS L 22 0 SHEET 2 AB1 3 SER L 72 ILE L 77 -1 O LEU L 75 N ILE L 20 SHEET 3 AB1 3 PHE L 64 SER L 69 -1 N SER L 67 O SER L 74 SHEET 1 AB2 4 PRO L 46 ILE L 50 0 SHEET 2 AB2 4 HIS L 36 GLN L 40 -1 N TRP L 37 O LEU L 49 SHEET 3 AB2 4 ASP L 87 SER L 92 -1 O GLN L 91 N HIS L 36 SHEET 4 AB2 4 VAL L 99 PHE L 100 -1 O VAL L 99 N SER L 92 SHEET 1 AB3 4 SER L 116 PHE L 120 0 SHEET 2 AB3 4 ALA L 132 PHE L 141 -1 O ASN L 139 N SER L 116 SHEET 3 AB3 4 TYR L 175 LEU L 183 -1 O LEU L 181 N VAL L 134 SHEET 4 AB3 4 SER L 161 THR L 166 -1 N THR L 166 O SER L 176 SHEET 1 AB4 3 LYS L 147 GLN L 149 0 SHEET 2 AB4 3 VAL L 193 THR L 199 -1 O GLU L 197 N GLN L 149 SHEET 3 AB4 3 VAL L 207 ASN L 212 -1 O VAL L 207 N VAL L 198 SHEET 1 AB5 2 LYS L 151 VAL L 152 0 SHEET 2 AB5 2 ALA L 155 LEU L 156 -1 O ALA L 155 N VAL L 152 SSBOND 1 CYS A 55 CYS A 67 1555 1555 2.03 SSBOND 2 CYS A 90 CYS A 135 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 97 1555 1555 2.02 SSBOND 4 CYS H 154 CYS H 210 1555 1555 2.03 SSBOND 5 CYS L 22 CYS L 90 1555 1555 2.03 SSBOND 6 CYS L 136 CYS L 196 1555 1555 2.04 CISPEP 1 SER H 128 SER H 129 0 6.58 CISPEP 2 PHE H 160 PRO H 161 0 -6.87 CISPEP 3 GLU H 162 PRO H 163 0 -6.96 CISPEP 4 TYR L 142 PRO L 143 0 6.33 CRYST1 132.664 132.664 87.957 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007538 0.004352 0.000000 0.00000 SCALE2 0.000000 0.008704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011369 0.00000