HEADER HYDROLASE 20-SEP-15 5DUQ TITLE ACTIVE HUMAN C1-INHIBITOR IN COMPLEX WITH DEXTRAN SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMA PROTEASE C1 INHIBITOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: C1INH,C1 ESTERASE INHIBITOR,C1-INHIBITING FACTOR,SERPIN G1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPING1, C1IN, C1NH; SOURCE 6 EXPRESSION_SYSTEM: ORYCTOLAGUS CUNICULUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9986 KEYWDS SERINE PROTEIN INHIBITOR, COMPLEX WITH GLYCOSAMINOGLYCAN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DIJK,J.HOLKERS,P.VOSKAMP,B.M.GIANNETTI,W.J.WATERREUS,H.A.VAN VEEN, AUTHOR 2 N.S.PANNU REVDAT 3 29-JUL-20 5DUQ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 25-JAN-17 5DUQ 1 JRNL REVDAT 1 31-AUG-16 5DUQ 0 JRNL AUTH M.DIJK,J.HOLKERS,P.VOSKAMP,B.M.GIANNETTI,W.J.WATERREUS, JRNL AUTH 2 H.A.VAN VEEN,N.S.PANNU JRNL TITL HOW DEXTRAN SULFATE AFFECTS C1-INHIBITOR ACTIVITY: A MODEL JRNL TITL 2 FOR POLYSACCHARIDE POTENTIATION. JRNL REF STRUCTURE V. 24 2182 2016 JRNL REFN ISSN 1878-4186 JRNL PMID 27818099 JRNL DOI 10.1016/J.STR.2016.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 24919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.4460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.70000 REMARK 3 B22 (A**2) : -5.72000 REMARK 3 B33 (A**2) : -2.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.310 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.399 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.442 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5940 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5775 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8056 ; 1.589 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13337 ; 1.175 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 725 ; 7.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;38.067 ;24.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1066 ;15.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.551 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 965 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6511 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1295 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2906 ; 6.502 ; 9.176 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2905 ; 6.501 ; 9.176 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3629 ;10.412 ;13.753 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3630 ;10.411 ;13.753 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3032 ; 6.433 ; 9.788 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3029 ; 6.424 ; 9.782 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4425 ;10.509 ;14.421 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6374 ;15.285 ;71.783 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6375 ;15.284 ;71.796 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 115 475 B 115 475 47194 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000213811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11 MG/ML OF C1-INHIBITOR WAS MIXED REMARK 280 WITH 5KDA DEXTRAN SULFATE IN A 1:2 MOLAR RATIO AND INCUBATED ON REMARK 280 ICE FOR AN HOUR. CRYSTALS GREW IN0.1 M SPG (PH 9), 25% W/V PEG REMARK 280 1500 0.1 M MGCL HEXAHYDRATE AFTER 10 DAYS., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.05000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 98.71200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.05000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 98.71200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 96 REMARK 465 THR A 97 REMARK 465 GLY A 98 REMARK 465 SER A 99 REMARK 465 PHE A 100 REMARK 465 CYS A 101 REMARK 465 PRO A 102 REMARK 465 GLY A 103 REMARK 465 PRO A 104 REMARK 465 VAL A 105 REMARK 465 THR A 106 REMARK 465 LEU A 107 REMARK 465 CYS A 108 REMARK 465 SER A 109 REMARK 465 ASP A 110 REMARK 465 LEU A 111 REMARK 465 GLU A 112 REMARK 465 SER A 113 REMARK 465 HIS A 114 REMARK 465 ARG A 477 REMARK 465 ALA A 478 REMARK 465 THR B 96 REMARK 465 THR B 97 REMARK 465 GLY B 98 REMARK 465 SER B 99 REMARK 465 PHE B 100 REMARK 465 CYS B 101 REMARK 465 PRO B 102 REMARK 465 GLY B 103 REMARK 465 PRO B 104 REMARK 465 VAL B 105 REMARK 465 THR B 106 REMARK 465 LEU B 107 REMARK 465 CYS B 108 REMARK 465 SER B 109 REMARK 465 ASP B 110 REMARK 465 LEU B 111 REMARK 465 ARG B 477 REMARK 465 ALA B 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 317 CE LYS A 363 2656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 140 -174.35 -65.26 REMARK 500 GLU A 165 -83.87 50.46 REMARK 500 THR A 192 123.06 -38.87 REMARK 500 SER A 200 89.97 -163.42 REMARK 500 SER A 223 61.75 31.43 REMARK 500 SER A 224 -179.47 -172.40 REMARK 500 SER A 230 -172.53 -50.31 REMARK 500 PRO A 260 177.18 -58.04 REMARK 500 ASP A 262 32.47 -90.22 REMARK 500 ASN A 269 99.02 -161.08 REMARK 500 LYS A 285 55.85 -95.58 REMARK 500 LYS A 294 -126.19 54.88 REMARK 500 LYS A 319 69.32 61.74 REMARK 500 LYS A 380 87.07 -151.56 REMARK 500 ASP A 386 99.91 -68.33 REMARK 500 LEU A 405 60.67 -108.39 REMARK 500 THR A 428 -151.82 -109.20 REMARK 500 SER A 438 0.24 54.12 REMARK 500 SER A 441 -163.33 -115.33 REMARK 500 VAL A 442 79.16 -116.48 REMARK 500 ARG A 444 -70.60 90.47 REMARK 500 LYS A 465 60.49 65.31 REMARK 500 SER B 113 -138.81 -88.16 REMARK 500 HIS B 114 -56.52 64.32 REMARK 500 SER B 115 -48.67 -19.96 REMARK 500 LYS B 140 -174.42 -64.79 REMARK 500 GLU B 165 -86.85 54.95 REMARK 500 THR B 192 122.69 -38.34 REMARK 500 SER B 200 90.36 -162.75 REMARK 500 SER B 223 62.34 29.44 REMARK 500 SER B 230 -173.96 -49.34 REMARK 500 PRO B 260 176.30 -59.00 REMARK 500 ASP B 262 32.17 -88.97 REMARK 500 ASN B 269 98.83 -161.47 REMARK 500 LYS B 285 56.51 -96.13 REMARK 500 LYS B 294 -125.81 54.90 REMARK 500 LYS B 319 69.55 60.99 REMARK 500 LYS B 380 87.43 -151.85 REMARK 500 LEU B 405 61.18 -108.33 REMARK 500 THR B 428 -151.66 -109.06 REMARK 500 SER B 438 -0.01 54.43 REMARK 500 SER B 441 -162.63 -115.18 REMARK 500 ARG B 444 -28.11 87.23 REMARK 500 LYS B 465 60.73 64.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: ALPHA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 GLC A 502 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DU3 RELATED DB: PDB REMARK 900 5DU3 IS UNCOMPLEXED ACTIVE HUMAN C1-INHIBITOR DBREF 5DUQ A 96 478 UNP P05155 IC1_HUMAN 118 500 DBREF 5DUQ B 96 478 UNP P05155 IC1_HUMAN 118 500 SEQADV 5DUQ MET A 458 UNP P05155 VAL 480 CONFLICT SEQADV 5DUQ MET B 458 UNP P05155 VAL 480 CONFLICT SEQRES 1 A 383 THR THR GLY SER PHE CYS PRO GLY PRO VAL THR LEU CYS SEQRES 2 A 383 SER ASP LEU GLU SER HIS SER THR GLU ALA VAL LEU GLY SEQRES 3 A 383 ASP ALA LEU VAL ASP PHE SER LEU LYS LEU TYR HIS ALA SEQRES 4 A 383 PHE SER ALA MET LYS LYS VAL GLU THR ASN MET ALA PHE SEQRES 5 A 383 SER PRO PHE SER ILE ALA SER LEU LEU THR GLN VAL LEU SEQRES 6 A 383 LEU GLY ALA GLY GLU ASN THR LYS THR ASN LEU GLU SER SEQRES 7 A 383 ILE LEU SER TYR PRO LYS ASP PHE THR CYS VAL HIS GLN SEQRES 8 A 383 ALA LEU LYS GLY PHE THR THR LYS GLY VAL THR SER VAL SEQRES 9 A 383 SER GLN ILE PHE HIS SER PRO ASP LEU ALA ILE ARG ASP SEQRES 10 A 383 THR PHE VAL ASN ALA SER ARG THR LEU TYR SER SER SER SEQRES 11 A 383 PRO ARG VAL LEU SER ASN ASN SER ASP ALA ASN LEU GLU SEQRES 12 A 383 LEU ILE ASN THR TRP VAL ALA LYS ASN THR ASN ASN LYS SEQRES 13 A 383 ILE SER ARG LEU LEU ASP SER LEU PRO SER ASP THR ARG SEQRES 14 A 383 LEU VAL LEU LEU ASN ALA ILE TYR LEU SER ALA LYS TRP SEQRES 15 A 383 LYS THR THR PHE ASP PRO LYS LYS THR ARG MET GLU PRO SEQRES 16 A 383 PHE HIS PHE LYS ASN SER VAL ILE LYS VAL PRO MET MET SEQRES 17 A 383 ASN SER LYS LYS TYR PRO VAL ALA HIS PHE ILE ASP GLN SEQRES 18 A 383 THR LEU LYS ALA LYS VAL GLY GLN LEU GLN LEU SER HIS SEQRES 19 A 383 ASN LEU SER LEU VAL ILE LEU VAL PRO GLN ASN LEU LYS SEQRES 20 A 383 HIS ARG LEU GLU ASP MET GLU GLN ALA LEU SER PRO SER SEQRES 21 A 383 VAL PHE LYS ALA ILE MET GLU LYS LEU GLU MET SER LYS SEQRES 22 A 383 PHE GLN PRO THR LEU LEU THR LEU PRO ARG ILE LYS VAL SEQRES 23 A 383 THR THR SER GLN ASP MET LEU SER ILE MET GLU LYS LEU SEQRES 24 A 383 GLU PHE PHE ASP PHE SER TYR ASP LEU ASN LEU CYS GLY SEQRES 25 A 383 LEU THR GLU ASP PRO ASP LEU GLN VAL SER ALA MET GLN SEQRES 26 A 383 HIS GLN THR VAL LEU GLU LEU THR GLU THR GLY VAL GLU SEQRES 27 A 383 ALA ALA ALA ALA SER ALA ILE SER VAL ALA ARG THR LEU SEQRES 28 A 383 LEU VAL PHE GLU VAL GLN GLN PRO PHE LEU PHE MET LEU SEQRES 29 A 383 TRP ASP GLN GLN HIS LYS PHE PRO VAL PHE MET GLY ARG SEQRES 30 A 383 VAL TYR ASP PRO ARG ALA SEQRES 1 B 383 THR THR GLY SER PHE CYS PRO GLY PRO VAL THR LEU CYS SEQRES 2 B 383 SER ASP LEU GLU SER HIS SER THR GLU ALA VAL LEU GLY SEQRES 3 B 383 ASP ALA LEU VAL ASP PHE SER LEU LYS LEU TYR HIS ALA SEQRES 4 B 383 PHE SER ALA MET LYS LYS VAL GLU THR ASN MET ALA PHE SEQRES 5 B 383 SER PRO PHE SER ILE ALA SER LEU LEU THR GLN VAL LEU SEQRES 6 B 383 LEU GLY ALA GLY GLU ASN THR LYS THR ASN LEU GLU SER SEQRES 7 B 383 ILE LEU SER TYR PRO LYS ASP PHE THR CYS VAL HIS GLN SEQRES 8 B 383 ALA LEU LYS GLY PHE THR THR LYS GLY VAL THR SER VAL SEQRES 9 B 383 SER GLN ILE PHE HIS SER PRO ASP LEU ALA ILE ARG ASP SEQRES 10 B 383 THR PHE VAL ASN ALA SER ARG THR LEU TYR SER SER SER SEQRES 11 B 383 PRO ARG VAL LEU SER ASN ASN SER ASP ALA ASN LEU GLU SEQRES 12 B 383 LEU ILE ASN THR TRP VAL ALA LYS ASN THR ASN ASN LYS SEQRES 13 B 383 ILE SER ARG LEU LEU ASP SER LEU PRO SER ASP THR ARG SEQRES 14 B 383 LEU VAL LEU LEU ASN ALA ILE TYR LEU SER ALA LYS TRP SEQRES 15 B 383 LYS THR THR PHE ASP PRO LYS LYS THR ARG MET GLU PRO SEQRES 16 B 383 PHE HIS PHE LYS ASN SER VAL ILE LYS VAL PRO MET MET SEQRES 17 B 383 ASN SER LYS LYS TYR PRO VAL ALA HIS PHE ILE ASP GLN SEQRES 18 B 383 THR LEU LYS ALA LYS VAL GLY GLN LEU GLN LEU SER HIS SEQRES 19 B 383 ASN LEU SER LEU VAL ILE LEU VAL PRO GLN ASN LEU LYS SEQRES 20 B 383 HIS ARG LEU GLU ASP MET GLU GLN ALA LEU SER PRO SER SEQRES 21 B 383 VAL PHE LYS ALA ILE MET GLU LYS LEU GLU MET SER LYS SEQRES 22 B 383 PHE GLN PRO THR LEU LEU THR LEU PRO ARG ILE LYS VAL SEQRES 23 B 383 THR THR SER GLN ASP MET LEU SER ILE MET GLU LYS LEU SEQRES 24 B 383 GLU PHE PHE ASP PHE SER TYR ASP LEU ASN LEU CYS GLY SEQRES 25 B 383 LEU THR GLU ASP PRO ASP LEU GLN VAL SER ALA MET GLN SEQRES 26 B 383 HIS GLN THR VAL LEU GLU LEU THR GLU THR GLY VAL GLU SEQRES 27 B 383 ALA ALA ALA ALA SER ALA ILE SER VAL ALA ARG THR LEU SEQRES 28 B 383 LEU VAL PHE GLU VAL GLN GLN PRO PHE LEU PHE MET LEU SEQRES 29 B 383 TRP ASP GLN GLN HIS LYS PHE PRO VAL PHE MET GLY ARG SEQRES 30 B 383 VAL TYR ASP PRO ARG ALA HET GLC C 1 12 HET BGC C 2 11 HET NAG A 501 14 HET GLC A 502 12 HET NAG B 501 14 HET SO3 B 504 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO3 SULFITE ION FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 BGC C6 H12 O6 FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 7 SO3 O3 S 2- FORMUL 8 HOH *24(H2 O) HELIX 1 AA1 SER A 115 LYS A 139 1 25 HELIX 2 AA2 SER A 148 GLY A 162 1 15 HELIX 3 AA3 GLY A 164 LEU A 175 1 12 HELIX 4 AA4 CYS A 183 THR A 192 1 10 HELIX 5 AA5 ARG A 211 TYR A 222 1 12 HELIX 6 AA6 ASN A 232 ASN A 247 1 16 HELIX 7 AA7 ASP A 282 THR A 286 5 5 HELIX 8 AA8 ARG A 344 GLN A 350 1 7 HELIX 9 AA9 SER A 353 SER A 367 1 15 HELIX 10 AB1 MET A 387 LEU A 394 1 8 HELIX 11 AB2 ALA A 435 ILE A 440 5 6 HELIX 12 AB3 HIS B 114 LYS B 139 1 26 HELIX 13 AB4 SER B 148 GLY B 162 1 15 HELIX 14 AB5 GLY B 164 LEU B 175 1 12 HELIX 15 AB6 CYS B 183 THR B 192 1 10 HELIX 16 AB7 ARG B 211 TYR B 222 1 12 HELIX 17 AB8 ASN B 232 THR B 248 1 17 HELIX 18 AB9 ASP B 282 THR B 286 5 5 HELIX 19 AC1 ARG B 344 GLN B 350 1 7 HELIX 20 AC2 SER B 353 SER B 367 1 15 HELIX 21 AC3 MET B 387 LEU B 394 1 8 HELIX 22 AC4 ALA B 435 ILE B 440 5 6 SHEET 1 AA1 7 MET A 145 PHE A 147 0 SHEET 2 AA1 7 PHE A 466 VAL A 473 -1 O MET A 470 N PHE A 147 SHEET 3 AA1 7 PHE A 455 ASP A 461 -1 N PHE A 455 O VAL A 473 SHEET 4 AA1 7 LEU A 331 PRO A 338 -1 N LEU A 336 O LEU A 456 SHEET 5 AA1 7 ALA A 320 GLN A 326 -1 N LYS A 321 O VAL A 337 SHEET 6 AA1 7 ILE A 298 ASP A 315 -1 N ALA A 311 O GLN A 324 SHEET 7 AA1 7 MET A 288 PHE A 291 -1 N PHE A 291 O ILE A 298 SHEET 1 AA2 8 MET A 145 PHE A 147 0 SHEET 2 AA2 8 PHE A 466 VAL A 473 -1 O MET A 470 N PHE A 147 SHEET 3 AA2 8 PHE A 455 ASP A 461 -1 N PHE A 455 O VAL A 473 SHEET 4 AA2 8 LEU A 331 PRO A 338 -1 N LEU A 336 O LEU A 456 SHEET 5 AA2 8 ALA A 320 GLN A 326 -1 N LYS A 321 O VAL A 337 SHEET 6 AA2 8 ILE A 298 ASP A 315 -1 N ALA A 311 O GLN A 324 SHEET 7 AA2 8 GLN A 370 PRO A 377 -1 O THR A 372 N TYR A 308 SHEET 8 AA2 8 VAL A 448 GLU A 450 1 O PHE A 449 N LEU A 373 SHEET 1 AA3 5 VAL A 196 VAL A 199 0 SHEET 2 AA3 5 ALA A 270 LEU A 273 -1 O TYR A 272 N THR A 197 SHEET 3 AA3 5 ALA A 418 LEU A 427 1 O VAL A 424 N ILE A 271 SHEET 4 AA3 5 LEU A 265 LEU A 267 1 N LEU A 267 O ALA A 418 SHEET 5 AA3 5 ILE A 202 HIS A 204 -1 N PHE A 203 O VAL A 266 SHEET 1 AA4 4 VAL A 196 VAL A 199 0 SHEET 2 AA4 4 ALA A 270 LEU A 273 -1 O TYR A 272 N THR A 197 SHEET 3 AA4 4 ALA A 418 LEU A 427 1 O VAL A 424 N ILE A 271 SHEET 4 AA4 4 ILE A 379 ASP A 386 -1 N ILE A 379 O LEU A 427 SHEET 1 AA5 2 TRP A 277 THR A 279 0 SHEET 2 AA5 2 GLY A 431 GLU A 433 1 O GLU A 433 N LYS A 278 SHEET 1 AA6 7 MET B 145 PHE B 147 0 SHEET 2 AA6 7 PHE B 466 VAL B 473 -1 O MET B 470 N PHE B 147 SHEET 3 AA6 7 PHE B 455 ASP B 461 -1 N PHE B 455 O VAL B 473 SHEET 4 AA6 7 LEU B 331 PRO B 338 -1 N LEU B 336 O LEU B 456 SHEET 5 AA6 7 ALA B 320 GLN B 326 -1 N LYS B 321 O VAL B 337 SHEET 6 AA6 7 ILE B 298 ASP B 315 -1 N ALA B 311 O GLN B 324 SHEET 7 AA6 7 MET B 288 PHE B 291 -1 N PHE B 291 O ILE B 298 SHEET 1 AA7 8 MET B 145 PHE B 147 0 SHEET 2 AA7 8 PHE B 466 VAL B 473 -1 O MET B 470 N PHE B 147 SHEET 3 AA7 8 PHE B 455 ASP B 461 -1 N PHE B 455 O VAL B 473 SHEET 4 AA7 8 LEU B 331 PRO B 338 -1 N LEU B 336 O LEU B 456 SHEET 5 AA7 8 ALA B 320 GLN B 326 -1 N LYS B 321 O VAL B 337 SHEET 6 AA7 8 ILE B 298 ASP B 315 -1 N ALA B 311 O GLN B 324 SHEET 7 AA7 8 GLN B 370 PRO B 377 -1 O THR B 372 N TYR B 308 SHEET 8 AA7 8 VAL B 448 GLU B 450 1 O PHE B 449 N LEU B 373 SHEET 1 AA8 5 VAL B 196 VAL B 199 0 SHEET 2 AA8 5 ALA B 270 LEU B 273 -1 O TYR B 272 N THR B 197 SHEET 3 AA8 5 ALA B 418 LEU B 427 1 O VAL B 424 N ILE B 271 SHEET 4 AA8 5 LEU B 265 LEU B 267 1 N LEU B 267 O ALA B 418 SHEET 5 AA8 5 ILE B 202 HIS B 204 -1 N PHE B 203 O VAL B 266 SHEET 1 AA9 4 VAL B 196 VAL B 199 0 SHEET 2 AA9 4 ALA B 270 LEU B 273 -1 O TYR B 272 N THR B 197 SHEET 3 AA9 4 ALA B 418 LEU B 427 1 O VAL B 424 N ILE B 271 SHEET 4 AA9 4 ILE B 379 ASP B 386 -1 N ILE B 379 O LEU B 427 SHEET 1 AB1 2 TRP B 277 THR B 279 0 SHEET 2 AB1 2 GLY B 431 GLU B 433 1 O GLU B 433 N LYS B 278 LINK ND2 ASN A 216 C1 NAG A 501 1555 1555 1.43 LINK ND2 ASN B 216 C1 NAG B 501 1555 1555 1.49 LINK S SO3 B 504 O2 GLC C 1 1555 1555 1.69 LINK O4 GLC C 1 C1 BGC C 2 1555 1555 1.46 CRYST1 112.100 197.424 56.779 90.00 103.31 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008921 0.000000 0.002110 0.00000 SCALE2 0.000000 0.005065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018098 0.00000