HEADER SUGAR BINDING PROTEIN 21-SEP-15 5DUV TITLE CRYSTAL STRUCTURE OF THE HUMAN GALECTIN-4 N-TERMINAL CARBOHYDRATE TITLE 2 RECOGNITION DOMAIN IN COMPLEX WITH LACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL CARBOHYDRATE RECOGNITION DOMAIN (UNP RESIDUES 1- COMPND 5 155); COMPND 6 SYNONYM: GAL-4,ANTIGEN NY-CO-27,L-36 LACTOSE-BINDING PROTEIN,L36LBP, COMPND 7 LACTOSE-BINDING LECTIN 4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGALS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN-4, LECTIN, LACTOSE, SUGAR-BINDING PROTEIN, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.BUM-ERDENE,H.BLANCHARD REVDAT 3 27-SEP-23 5DUV 1 HETSYN REVDAT 2 29-JUL-20 5DUV 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 17-FEB-16 5DUV 0 JRNL AUTH K.BUM-ERDENE,H.LEFFLER,U.J.NILSSON,H.BLANCHARD JRNL TITL STRUCTURAL CHARACTERISATION OF HUMAN GALECTIN-4 N-TERMINAL JRNL TITL 2 CARBOHYDRATE RECOGNITION DOMAIN IN COMPLEX WITH GLYCEROL, JRNL TITL 3 LACTOSE, 3'-SULFO-LACTOSE, AND 2'-FUCOSYLLACTOSE. JRNL REF SCI REP V. 6 20289 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26828567 JRNL DOI 10.1038/SREP20289 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 38075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2322 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4732 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4396 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6435 ; 1.063 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10116 ; 0.514 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 7.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;36.216 ;23.950 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;14.587 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.055 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 677 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5390 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1212 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2225 ; 1.740 ; 1.511 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2222 ; 1.731 ; 1.509 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2779 ; 2.520 ; 2.250 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 20 % W/V PEG REMARK 280 3350, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.37500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 TYR A 9 REMARK 465 GLN A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 TYR A 13 REMARK 465 GLY A 152 REMARK 465 GLN A 153 REMARK 465 PRO A 154 REMARK 465 LEU A 155 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 TYR B 3 REMARK 465 VAL B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 GLN B 10 REMARK 465 PRO B 11 REMARK 465 THR B 12 REMARK 465 TYR B 13 REMARK 465 ASN B 14 REMARK 465 GLY B 152 REMARK 465 GLN B 153 REMARK 465 PRO B 154 REMARK 465 LEU B 155 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 TYR C 3 REMARK 465 VAL C 4 REMARK 465 PRO C 5 REMARK 465 ALA C 6 REMARK 465 PRO C 7 REMARK 465 GLY C 8 REMARK 465 TYR C 9 REMARK 465 GLN C 10 REMARK 465 PRO C 11 REMARK 465 THR C 12 REMARK 465 TYR C 13 REMARK 465 ASN C 14 REMARK 465 GLY C 152 REMARK 465 GLN C 153 REMARK 465 PRO C 154 REMARK 465 LEU C 155 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 TYR D 3 REMARK 465 VAL D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 GLY D 8 REMARK 465 TYR D 9 REMARK 465 GLN D 10 REMARK 465 PRO D 11 REMARK 465 THR D 12 REMARK 465 TYR D 13 REMARK 465 ASN D 14 REMARK 465 GLN D 153 REMARK 465 PRO D 154 REMARK 465 LEU D 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 311 O HOH B 304 1.89 REMARK 500 O HOH D 357 O HOH D 381 2.13 REMARK 500 O HOH D 344 O HOH D 388 2.19 REMARK 500 OH TYR C 34 OE2 GLU C 102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 54 47.46 -142.44 REMARK 500 TYR D 20 98.12 -160.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 68 O REMARK 620 2 GLY A 70 O 89.3 REMARK 620 3 ASP A 72 OD1 91.5 100.6 REMARK 620 4 HOH A 315 O 164.0 93.7 72.4 REMARK 620 5 HOH A 368 O 85.8 165.3 93.3 94.7 REMARK 620 6 HOH A 378 O 86.1 78.8 177.6 109.9 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 68 O REMARK 620 2 GLY B 70 O 73.7 REMARK 620 3 ASP B 72 OD1 82.5 86.2 REMARK 620 4 HOH B 372 O 84.3 92.9 166.4 REMARK 620 5 HOH B 376 O 95.5 160.5 108.8 69.5 REMARK 620 6 HOH B 384 O 162.7 102.0 114.3 79.2 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE C 68 O REMARK 620 2 GLY C 70 O 83.8 REMARK 620 3 ASP C 72 OD1 82.5 96.0 REMARK 620 4 ACT C 203 O 138.2 71.3 67.9 REMARK 620 5 HOH C 314 O 161.8 103.9 112.5 59.8 REMARK 620 6 HOH C 365 O 86.2 163.4 95.7 124.3 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE D 68 O REMARK 620 2 GLY D 70 O 86.6 REMARK 620 3 ASP D 72 OD1 78.6 92.0 REMARK 620 4 HOH D 365 O 164.1 92.9 117.3 REMARK 620 5 HOH D 396 O 83.3 87.5 161.9 80.8 REMARK 620 6 HOH D 400 O 87.3 171.9 92.1 91.4 86.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DUU RELATED DB: PDB REMARK 900 RELATED ID: 5DUW RELATED DB: PDB REMARK 900 RELATED ID: 5DUX RELATED DB: PDB DBREF 5DUV A 1 155 UNP P56470 LEG4_HUMAN 1 155 DBREF 5DUV B 1 155 UNP P56470 LEG4_HUMAN 1 155 DBREF 5DUV C 1 155 UNP P56470 LEG4_HUMAN 1 155 DBREF 5DUV D 1 155 UNP P56470 LEG4_HUMAN 1 155 SEQRES 1 A 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 A 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 A 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 A 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 A 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 A 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 A 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 A 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 A 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 A 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 A 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 A 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU SEQRES 1 B 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 B 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 B 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 B 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 B 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 B 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 B 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 B 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 B 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 B 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 B 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 B 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU SEQRES 1 C 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 C 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 C 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 C 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 C 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 C 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 C 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 C 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 C 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 C 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 C 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 C 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU SEQRES 1 D 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 D 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 D 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 D 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 D 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 D 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 D 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 D 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 D 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 D 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 D 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 D 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU HET BGC E 1 12 HET GAL E 2 11 HET BGC F 1 12 HET GAL F 2 11 HET BGC G 1 12 HET GAL G 2 11 HET BGC H 1 12 HET GAL H 2 11 HET CA A 202 1 HET CA B 202 1 HET CA C 202 1 HET ACT C 203 4 HET CA D 202 1 HET ACT D 203 4 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 5 BGC 4(C6 H12 O6) FORMUL 5 GAL 4(C6 H12 O6) FORMUL 9 CA 4(CA 2+) FORMUL 12 ACT 2(C2 H3 O2 1-) FORMUL 15 HOH *380(H2 O) HELIX 1 AA1 PRO A 129 VAL A 133 5 5 HELIX 2 AA2 PRO B 129 VAL B 133 5 5 HELIX 3 AA3 PRO C 129 VAL C 133 5 5 HELIX 4 AA4 PRO D 129 VAL D 133 5 5 SHEET 1 AA1 6 TYR A 19 PRO A 22 0 SHEET 2 AA1 6 HIS A 135 GLY A 140 -1 O VAL A 138 N TYR A 19 SHEET 3 AA1 6 PHE A 46 VAL A 52 -1 N ASN A 49 O GLN A 137 SHEET 4 AA1 6 ASP A 59 ARG A 67 -1 O ASP A 59 N VAL A 52 SHEET 5 AA1 6 LYS A 73 GLN A 80 -1 O LYS A 73 N ARG A 67 SHEET 6 AA1 6 LYS A 83 TRP A 84 -1 O LYS A 83 N GLN A 80 SHEET 1 AA2 6 TYR A 19 PRO A 22 0 SHEET 2 AA2 6 HIS A 135 GLY A 140 -1 O VAL A 138 N TYR A 19 SHEET 3 AA2 6 PHE A 46 VAL A 52 -1 N ASN A 49 O GLN A 137 SHEET 4 AA2 6 ASP A 59 ARG A 67 -1 O ASP A 59 N VAL A 52 SHEET 5 AA2 6 LYS A 73 GLN A 80 -1 O LYS A 73 N ARG A 67 SHEET 6 AA2 6 GLU A 88 LYS A 90 -1 O GLU A 88 N PHE A 76 SHEET 1 AA3 5 ASN A 119 GLY A 125 0 SHEET 2 AA3 5 HIS A 111 VAL A 116 -1 N VAL A 114 O TYR A 122 SHEET 3 AA3 5 ALA A 100 VAL A 107 -1 N ILE A 106 O LYS A 113 SHEET 4 AA3 5 SER A 32 ALA A 39 -1 N ILE A 35 O LEU A 103 SHEET 5 AA3 5 LEU A 142 ILE A 150 -1 O ILE A 150 N SER A 32 SHEET 1 AA4 6 TYR B 19 PRO B 22 0 SHEET 2 AA4 6 HIS B 135 GLY B 140 -1 O VAL B 138 N TYR B 19 SHEET 3 AA4 6 PHE B 46 VAL B 52 -1 N ASN B 49 O GLN B 137 SHEET 4 AA4 6 ASP B 59 ARG B 67 -1 O ASP B 59 N VAL B 52 SHEET 5 AA4 6 LYS B 73 GLN B 80 -1 O LYS B 73 N ARG B 67 SHEET 6 AA4 6 LYS B 83 TRP B 84 -1 O LYS B 83 N GLN B 80 SHEET 1 AA5 6 TYR B 19 PRO B 22 0 SHEET 2 AA5 6 HIS B 135 GLY B 140 -1 O VAL B 138 N TYR B 19 SHEET 3 AA5 6 PHE B 46 VAL B 52 -1 N ASN B 49 O GLN B 137 SHEET 4 AA5 6 ASP B 59 ARG B 67 -1 O ASP B 59 N VAL B 52 SHEET 5 AA5 6 LYS B 73 GLN B 80 -1 O LYS B 73 N ARG B 67 SHEET 6 AA5 6 GLU B 88 LYS B 90 -1 O GLU B 88 N PHE B 76 SHEET 1 AA6 5 ASN B 119 GLY B 125 0 SHEET 2 AA6 5 HIS B 111 VAL B 116 -1 N VAL B 114 O TYR B 122 SHEET 3 AA6 5 ALA B 100 VAL B 107 -1 N ILE B 106 O LYS B 113 SHEET 4 AA6 5 SER B 32 ALA B 39 -1 N ILE B 35 O LEU B 103 SHEET 5 AA6 5 LEU B 142 ILE B 150 -1 O ILE B 150 N SER B 32 SHEET 1 AA7 6 TYR C 19 PRO C 22 0 SHEET 2 AA7 6 HIS C 135 GLY C 140 -1 O LEU C 136 N GLN C 21 SHEET 3 AA7 6 PHE C 46 VAL C 51 -1 N ASN C 49 O GLN C 137 SHEET 4 AA7 6 VAL C 60 ARG C 67 -1 O PHE C 62 N PHE C 50 SHEET 5 AA7 6 LYS C 73 GLN C 80 -1 O ASN C 77 N HIS C 63 SHEET 6 AA7 6 LYS C 83 TRP C 84 -1 O LYS C 83 N GLN C 80 SHEET 1 AA8 6 TYR C 19 PRO C 22 0 SHEET 2 AA8 6 HIS C 135 GLY C 140 -1 O LEU C 136 N GLN C 21 SHEET 3 AA8 6 PHE C 46 VAL C 51 -1 N ASN C 49 O GLN C 137 SHEET 4 AA8 6 VAL C 60 ARG C 67 -1 O PHE C 62 N PHE C 50 SHEET 5 AA8 6 LYS C 73 GLN C 80 -1 O ASN C 77 N HIS C 63 SHEET 6 AA8 6 GLU C 88 LYS C 90 -1 O GLU C 88 N PHE C 76 SHEET 1 AA9 5 ASN C 119 GLY C 125 0 SHEET 2 AA9 5 HIS C 111 VAL C 116 -1 N VAL C 114 O TYR C 122 SHEET 3 AA9 5 ALA C 100 VAL C 107 -1 N ILE C 106 O LYS C 113 SHEET 4 AA9 5 SER C 32 ALA C 39 -1 N ILE C 35 O LEU C 103 SHEET 5 AA9 5 LEU C 142 ILE C 150 -1 O ILE C 150 N SER C 32 SHEET 1 AB1 6 TYR D 19 PRO D 22 0 SHEET 2 AB1 6 HIS D 135 GLY D 140 -1 O LEU D 136 N GLN D 21 SHEET 3 AB1 6 PHE D 46 VAL D 52 -1 N ASN D 49 O GLN D 137 SHEET 4 AB1 6 ASP D 59 ARG D 67 -1 O ASP D 59 N VAL D 52 SHEET 5 AB1 6 LYS D 73 GLN D 80 -1 O LYS D 73 N ARG D 67 SHEET 6 AB1 6 LYS D 83 TRP D 84 -1 O LYS D 83 N GLN D 80 SHEET 1 AB2 6 TYR D 19 PRO D 22 0 SHEET 2 AB2 6 HIS D 135 GLY D 140 -1 O LEU D 136 N GLN D 21 SHEET 3 AB2 6 PHE D 46 VAL D 52 -1 N ASN D 49 O GLN D 137 SHEET 4 AB2 6 ASP D 59 ARG D 67 -1 O ASP D 59 N VAL D 52 SHEET 5 AB2 6 LYS D 73 GLN D 80 -1 O LYS D 73 N ARG D 67 SHEET 6 AB2 6 GLU D 88 LYS D 90 -1 O GLU D 88 N PHE D 76 SHEET 1 AB3 5 ASN D 119 GLY D 125 0 SHEET 2 AB3 5 HIS D 111 VAL D 116 -1 N VAL D 114 O TYR D 122 SHEET 3 AB3 5 ALA D 100 VAL D 107 -1 N ILE D 106 O LYS D 113 SHEET 4 AB3 5 SER D 32 ALA D 39 -1 N ILE D 35 O LEU D 103 SHEET 5 AB3 5 LEU D 142 ILE D 150 -1 O ILE D 150 N SER D 32 LINK O4 BGC E 1 C1 GAL E 2 1555 1555 1.44 LINK O4 BGC F 1 C1 GAL F 2 1555 1555 1.42 LINK O4 BGC G 1 C1 GAL G 2 1555 1555 1.44 LINK O4 BGC H 1 C1 GAL H 2 1555 1555 1.41 LINK O PHE A 68 CA CA A 202 1555 1555 2.29 LINK O GLY A 70 CA CA A 202 1555 1555 2.12 LINK OD1 ASP A 72 CA CA A 202 1555 1555 2.21 LINK CA CA A 202 O HOH A 315 1555 1555 2.31 LINK CA CA A 202 O HOH A 368 1555 1555 2.01 LINK CA CA A 202 O HOH A 378 1555 1555 2.64 LINK O PHE B 68 CA CA B 202 1555 1555 2.25 LINK O GLY B 70 CA CA B 202 1555 1555 2.22 LINK OD1 ASP B 72 CA CA B 202 1555 1555 2.42 LINK CA CA B 202 O HOH B 372 1555 1555 2.40 LINK CA CA B 202 O HOH B 376 1555 1555 2.05 LINK CA CA B 202 O HOH B 384 1555 1555 2.46 LINK O PHE C 68 CA CA C 202 1555 1555 2.29 LINK O GLY C 70 CA CA C 202 1555 1555 2.25 LINK OD1 ASP C 72 CA CA C 202 1555 1555 2.31 LINK CA CA C 202 O ACT C 203 1555 1555 2.89 LINK CA CA C 202 O HOH C 314 1555 1555 2.26 LINK CA CA C 202 O HOH C 365 1555 1555 2.07 LINK O PHE D 68 CA CA D 202 1555 1555 2.33 LINK O GLY D 70 CA CA D 202 1555 1555 2.30 LINK OD1 ASP D 72 CA CA D 202 1555 1555 2.44 LINK CA CA D 202 O HOH D 365 1555 1555 2.37 LINK CA CA D 202 O HOH D 396 1555 1555 2.35 LINK CA CA D 202 O HOH D 400 1555 1555 2.43 CISPEP 1 LEU A 17 PRO A 18 0 -4.74 CISPEP 2 LEU B 17 PRO B 18 0 -3.15 CISPEP 3 LEU C 17 PRO C 18 0 -7.73 CISPEP 4 LEU D 17 PRO D 18 0 1.76 CRYST1 62.920 64.750 64.470 90.00 91.26 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015893 0.000000 0.000350 0.00000 SCALE2 0.000000 0.015444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015515 0.00000