HEADER SUGAR BINDING PROTEIN 21-SEP-15 5DUW TITLE CRYSTAL STRUCTURE OF THE HUMAN GALECTIN-4 N-TERMINAL CARBOHYDRATE TITLE 2 RECOGNITION DOMAIN IN COMPLEX WITH LACTOSE-3'-SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALECTIN-4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL CARBOHYDRATE RECOGNITION DOMAIN (UNP RESIDUES 1- COMPND 5 155); COMPND 6 SYNONYM: GAL-4,ANTIGEN NY-CO-27,L-36 LACTOSE-BINDING PROTEIN,L36LBP, COMPND 7 LACTOSE-BINDING LECTIN 4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGALS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALECTIN-4, LECTIN, SULFATE, SUGAR-BINDING PROTEIN, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.BUM-ERDENE,H.BLANCHARD REVDAT 3 27-SEP-23 5DUW 1 HETSYN REVDAT 2 29-JUL-20 5DUW 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 1 17-FEB-16 5DUW 0 JRNL AUTH K.BUM-ERDENE,H.LEFFLER,U.J.NILSSON,H.BLANCHARD JRNL TITL STRUCTURAL CHARACTERISATION OF HUMAN GALECTIN-4 N-TERMINAL JRNL TITL 2 CARBOHYDRATE RECOGNITION DOMAIN IN COMPLEX WITH GLYCEROL, JRNL TITL 3 LACTOSE, 3'-SULFO-LACTOSE, AND 2'-FUCOSYLLACTOSE. JRNL REF SCI REP V. 6 20289 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26828567 JRNL DOI 10.1038/SREP20289 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 53758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 558 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 1.97000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE AUTHORS STATE THAT THE ELECTRON REMARK 3 DENSITY CURRENTLY MODELLED AS WATER MOLECULES A304, B302, C301 REMARK 3 AND D301, WHICH ARE COORDINATED BY RESIDUES ASP72, GLY70 AND REMARK 3 PHE68 SHOWS POTENTIAL FOR OCCUPATION BY NA+ IONS, WHICH IS REMARK 3 PRESENT IN THE CRYSTALLISATION CONDITIONS. REMARK 4 REMARK 4 5DUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 64.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE, 0.1 M TRIS, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.02500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 TYR A 9 REMARK 465 GLN A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 TYR A 13 REMARK 465 ASN A 14 REMARK 465 GLN A 153 REMARK 465 PRO A 154 REMARK 465 LEU A 155 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 TYR B 3 REMARK 465 VAL B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 GLN B 10 REMARK 465 PRO B 11 REMARK 465 THR B 12 REMARK 465 TYR B 13 REMARK 465 ASN B 14 REMARK 465 PRO B 154 REMARK 465 LEU B 155 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 TYR C 3 REMARK 465 VAL C 4 REMARK 465 PRO C 5 REMARK 465 ALA C 6 REMARK 465 PRO C 7 REMARK 465 GLY C 8 REMARK 465 TYR C 9 REMARK 465 GLN C 10 REMARK 465 PRO C 11 REMARK 465 THR C 12 REMARK 465 TYR C 13 REMARK 465 ASN C 14 REMARK 465 GLY C 152 REMARK 465 GLN C 153 REMARK 465 PRO C 154 REMARK 465 LEU C 155 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 TYR D 3 REMARK 465 VAL D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 GLY D 8 REMARK 465 TYR D 9 REMARK 465 GLN D 10 REMARK 465 PRO D 11 REMARK 465 THR D 12 REMARK 465 TYR D 13 REMARK 465 ASN D 14 REMARK 465 GLY D 152 REMARK 465 GLN D 153 REMARK 465 PRO D 154 REMARK 465 LEU D 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 313 O HOH C 334 1.80 REMARK 500 O HOH B 325 O HOH B 370 1.84 REMARK 500 O HOH B 385 O HOH B 406 1.85 REMARK 500 O HOH D 306 O HOH D 355 1.92 REMARK 500 OH TYR B 34 OE2 GLU B 102 2.01 REMARK 500 O HOH A 422 O HOH A 429 2.04 REMARK 500 O HOH C 412 O HOH C 433 2.05 REMARK 500 O1S SGA F 2 O HOH B 301 2.08 REMARK 500 O GLY D 70 O HOH D 301 2.09 REMARK 500 O HOH B 382 O HOH B 384 2.11 REMARK 500 OD2 ASP A 69 O HOH A 301 2.11 REMARK 500 NE2 GLN D 80 O HOH D 302 2.11 REMARK 500 O HOH C 360 O HOH D 304 2.12 REMARK 500 OD1 ASP C 72 O HOH C 301 2.13 REMARK 500 O PHE D 149 O HOH D 303 2.14 REMARK 500 CD GLN D 80 O HOH D 302 2.14 REMARK 500 OE2 GLU A 110 O HOH A 302 2.14 REMARK 500 OG SER A 58 O HOH A 303 2.14 REMARK 500 O HOH C 422 O HOH C 427 2.15 REMARK 500 O HOH D 429 O HOH D 436 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 371 O HOH B 400 2854 1.85 REMARK 500 O HOH A 374 O HOH A 417 2743 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 91 34.41 -97.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DUU RELATED DB: PDB REMARK 900 RELATED ID: 5DUV RELATED DB: PDB REMARK 900 RELATED ID: 5DUX RELATED DB: PDB DBREF 5DUW A 1 155 UNP P56470 LEG4_HUMAN 1 155 DBREF 5DUW B 1 155 UNP P56470 LEG4_HUMAN 1 155 DBREF 5DUW C 1 155 UNP P56470 LEG4_HUMAN 1 155 DBREF 5DUW D 1 155 UNP P56470 LEG4_HUMAN 1 155 SEQRES 1 A 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 A 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 A 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 A 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 A 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 A 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 A 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 A 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 A 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 A 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 A 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 A 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU SEQRES 1 B 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 B 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 B 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 B 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 B 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 B 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 B 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 B 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 B 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 B 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 B 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 B 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU SEQRES 1 C 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 C 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 C 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 C 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 C 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 C 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 C 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 C 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 C 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 C 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 C 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 C 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU SEQRES 1 D 155 MET ALA TYR VAL PRO ALA PRO GLY TYR GLN PRO THR TYR SEQRES 2 D 155 ASN PRO THR LEU PRO TYR TYR GLN PRO ILE PRO GLY GLY SEQRES 3 D 155 LEU ASN VAL GLY MET SER VAL TYR ILE GLN GLY VAL ALA SEQRES 4 D 155 SER GLU HIS MET LYS ARG PHE PHE VAL ASN PHE VAL VAL SEQRES 5 D 155 GLY GLN ASP PRO GLY SER ASP VAL ALA PHE HIS PHE ASN SEQRES 6 D 155 PRO ARG PHE ASP GLY TRP ASP LYS VAL VAL PHE ASN THR SEQRES 7 D 155 LEU GLN GLY GLY LYS TRP GLY SER GLU GLU ARG LYS ARG SEQRES 8 D 155 SER MET PRO PHE LYS LYS GLY ALA ALA PHE GLU LEU VAL SEQRES 9 D 155 PHE ILE VAL LEU ALA GLU HIS TYR LYS VAL VAL VAL ASN SEQRES 10 D 155 GLY ASN PRO PHE TYR GLU TYR GLY HIS ARG LEU PRO LEU SEQRES 11 D 155 GLN MET VAL THR HIS LEU GLN VAL ASP GLY ASP LEU GLN SEQRES 12 D 155 LEU GLN SER ILE ASN PHE ILE GLY GLY GLN PRO LEU HET BGC E 1 12 HET SGA E 2 15 HET BGC F 1 12 HET SGA F 2 15 HET BGC G 1 12 HET SGA G 2 15 HET BGC H 1 12 HET SGA H 2 15 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM SGA 3-O-SULFO-BETA-D-GALACTOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN SGA O3-SULFONYLGALACTOSE; 3-O-SULFO-BETA-D-GALACTOSE; 3-O- HETSYN 2 SGA SULFO-D-GALACTOSE; 3-O-SULFO-GALACTOSE FORMUL 5 BGC 4(C6 H12 O6) FORMUL 5 SGA 4(C6 H12 O9 S) FORMUL 9 HOH *558(H2 O) HELIX 1 AA1 PRO A 129 VAL A 133 5 5 HELIX 2 AA2 PRO B 129 VAL B 133 5 5 HELIX 3 AA3 PRO C 129 VAL C 133 5 5 HELIX 4 AA4 PRO D 129 VAL D 133 5 5 SHEET 1 AA1 6 TYR A 19 PRO A 22 0 SHEET 2 AA1 6 HIS A 135 GLY A 140 -1 O LEU A 136 N GLN A 21 SHEET 3 AA1 6 PHE A 46 VAL A 52 -1 N ASN A 49 O GLN A 137 SHEET 4 AA1 6 ASP A 59 ARG A 67 -1 O ASP A 59 N VAL A 52 SHEET 5 AA1 6 LYS A 73 GLN A 80 -1 O LYS A 73 N ARG A 67 SHEET 6 AA1 6 LYS A 83 TRP A 84 -1 O LYS A 83 N GLN A 80 SHEET 1 AA2 6 TYR A 19 PRO A 22 0 SHEET 2 AA2 6 HIS A 135 GLY A 140 -1 O LEU A 136 N GLN A 21 SHEET 3 AA2 6 PHE A 46 VAL A 52 -1 N ASN A 49 O GLN A 137 SHEET 4 AA2 6 ASP A 59 ARG A 67 -1 O ASP A 59 N VAL A 52 SHEET 5 AA2 6 LYS A 73 GLN A 80 -1 O LYS A 73 N ARG A 67 SHEET 6 AA2 6 GLU A 88 LYS A 90 -1 O GLU A 88 N PHE A 76 SHEET 1 AA3 5 ASN A 119 GLY A 125 0 SHEET 2 AA3 5 HIS A 111 VAL A 116 -1 N VAL A 114 O PHE A 121 SHEET 3 AA3 5 ALA A 100 VAL A 107 -1 N ILE A 106 O LYS A 113 SHEET 4 AA3 5 SER A 32 ALA A 39 -1 N ILE A 35 O LEU A 103 SHEET 5 AA3 5 LEU A 142 ILE A 150 -1 O ILE A 150 N SER A 32 SHEET 1 AA4 6 TYR B 19 PRO B 22 0 SHEET 2 AA4 6 HIS B 135 GLY B 140 -1 O LEU B 136 N GLN B 21 SHEET 3 AA4 6 PHE B 46 VAL B 52 -1 N ASN B 49 O GLN B 137 SHEET 4 AA4 6 ASP B 59 ARG B 67 -1 O ASP B 59 N VAL B 52 SHEET 5 AA4 6 LYS B 73 GLN B 80 -1 O LYS B 73 N ARG B 67 SHEET 6 AA4 6 LYS B 83 TRP B 84 -1 O LYS B 83 N GLN B 80 SHEET 1 AA5 6 TYR B 19 PRO B 22 0 SHEET 2 AA5 6 HIS B 135 GLY B 140 -1 O LEU B 136 N GLN B 21 SHEET 3 AA5 6 PHE B 46 VAL B 52 -1 N ASN B 49 O GLN B 137 SHEET 4 AA5 6 ASP B 59 ARG B 67 -1 O ASP B 59 N VAL B 52 SHEET 5 AA5 6 LYS B 73 GLN B 80 -1 O LYS B 73 N ARG B 67 SHEET 6 AA5 6 GLU B 88 LYS B 90 -1 O GLU B 88 N PHE B 76 SHEET 1 AA6 5 ASN B 119 GLY B 125 0 SHEET 2 AA6 5 HIS B 111 VAL B 116 -1 N VAL B 114 O PHE B 121 SHEET 3 AA6 5 ALA B 100 VAL B 107 -1 N ILE B 106 O LYS B 113 SHEET 4 AA6 5 SER B 32 ALA B 39 -1 N ILE B 35 O LEU B 103 SHEET 5 AA6 5 LEU B 142 ILE B 150 -1 O ILE B 150 N SER B 32 SHEET 1 AA7 6 TYR C 19 PRO C 22 0 SHEET 2 AA7 6 HIS C 135 GLY C 140 -1 O VAL C 138 N TYR C 19 SHEET 3 AA7 6 PHE C 46 VAL C 51 -1 N ASN C 49 O GLN C 137 SHEET 4 AA7 6 VAL C 60 ARG C 67 -1 O PHE C 62 N PHE C 50 SHEET 5 AA7 6 LYS C 73 GLN C 80 -1 O LYS C 73 N ARG C 67 SHEET 6 AA7 6 LYS C 83 TRP C 84 -1 O LYS C 83 N GLN C 80 SHEET 1 AA8 6 TYR C 19 PRO C 22 0 SHEET 2 AA8 6 HIS C 135 GLY C 140 -1 O VAL C 138 N TYR C 19 SHEET 3 AA8 6 PHE C 46 VAL C 51 -1 N ASN C 49 O GLN C 137 SHEET 4 AA8 6 VAL C 60 ARG C 67 -1 O PHE C 62 N PHE C 50 SHEET 5 AA8 6 LYS C 73 GLN C 80 -1 O LYS C 73 N ARG C 67 SHEET 6 AA8 6 GLU C 88 LYS C 90 -1 O GLU C 88 N PHE C 76 SHEET 1 AA9 5 ASN C 119 GLY C 125 0 SHEET 2 AA9 5 HIS C 111 VAL C 116 -1 N VAL C 114 O TYR C 122 SHEET 3 AA9 5 ALA C 100 VAL C 107 -1 N ILE C 106 O LYS C 113 SHEET 4 AA9 5 SER C 32 ALA C 39 -1 N ILE C 35 O LEU C 103 SHEET 5 AA9 5 LEU C 142 ILE C 150 -1 O ILE C 150 N SER C 32 SHEET 1 AB1 6 TYR D 19 PRO D 22 0 SHEET 2 AB1 6 HIS D 135 GLY D 140 -1 O LEU D 136 N GLN D 21 SHEET 3 AB1 6 PHE D 46 VAL D 51 -1 N ASN D 49 O GLN D 137 SHEET 4 AB1 6 VAL D 60 ARG D 67 -1 O PHE D 62 N PHE D 50 SHEET 5 AB1 6 LYS D 73 GLN D 80 -1 O LYS D 73 N ARG D 67 SHEET 6 AB1 6 LYS D 83 TRP D 84 -1 O LYS D 83 N GLN D 80 SHEET 1 AB2 6 TYR D 19 PRO D 22 0 SHEET 2 AB2 6 HIS D 135 GLY D 140 -1 O LEU D 136 N GLN D 21 SHEET 3 AB2 6 PHE D 46 VAL D 51 -1 N ASN D 49 O GLN D 137 SHEET 4 AB2 6 VAL D 60 ARG D 67 -1 O PHE D 62 N PHE D 50 SHEET 5 AB2 6 LYS D 73 GLN D 80 -1 O LYS D 73 N ARG D 67 SHEET 6 AB2 6 GLU D 88 LYS D 90 -1 O GLU D 88 N PHE D 76 SHEET 1 AB3 5 ASN D 119 GLY D 125 0 SHEET 2 AB3 5 HIS D 111 VAL D 116 -1 N VAL D 114 O PHE D 121 SHEET 3 AB3 5 ALA D 100 VAL D 107 -1 N ILE D 106 O LYS D 113 SHEET 4 AB3 5 SER D 32 ALA D 39 -1 N ILE D 35 O LEU D 103 SHEET 5 AB3 5 LEU D 142 ILE D 150 -1 O ILE D 150 N SER D 32 LINK O4 BGC E 1 C1 SGA E 2 1555 1555 1.43 LINK O4 BGC F 1 C1 SGA F 2 1555 1555 1.41 LINK O4 BGC G 1 C1 SGA G 2 1555 1555 1.43 LINK O4 BGC H 1 C1 SGA H 2 1555 1555 1.40 CISPEP 1 LEU A 17 PRO A 18 0 -4.25 CISPEP 2 LEU B 17 PRO B 18 0 -4.48 CISPEP 3 LEU C 17 PRO C 18 0 -1.98 CISPEP 4 LEU D 17 PRO D 18 0 -5.72 CRYST1 63.180 64.050 64.650 90.00 91.03 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015828 0.000000 0.000285 0.00000 SCALE2 0.000000 0.015613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015470 0.00000