HEADER TRANSFERASE 21-SEP-15 5DVP TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS L,D-TRANSPEPTIDASE 2 TITLE 2 WITH DORIPENEM ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: L,D-TRANSPEPTIDASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 58-407; COMPND 5 SYNONYM: LDT 2,LDT(MT2); COMPND 6 EC: 2.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: LDTB, LPPS, RV2518C, RVBD_2518C, P425_02624; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PEPTIDOGLYCAN SYNTHESIS ENZYME, CELL WALL ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,G.LAMICHHANE REVDAT 6 27-SEP-23 5DVP 1 REMARK REVDAT 5 20-SEP-17 5DVP 1 REMARK REVDAT 4 28-DEC-16 5DVP 1 JRNL REVDAT 3 23-NOV-16 5DVP 1 JRNL REVDAT 2 09-NOV-16 5DVP 1 JRNL REVDAT 1 28-SEP-16 5DVP 0 JRNL AUTH P.KUMAR,A.KAUSHIK,E.P.LLOYD,S.G.LI,R.MATTOO,N.C.AMMERMAN, JRNL AUTH 2 D.T.BELL,A.L.PERRYMAN,T.A.ZANDI,S.EKINS,S.L.GINELL, JRNL AUTH 3 C.A.TOWNSEND,J.S.FREUNDLICH,G.LAMICHHANE JRNL TITL NON-CLASSICAL TRANSPEPTIDASES YIELD INSIGHT INTO NEW JRNL TITL 2 ANTIBACTERIALS. JRNL REF NAT. CHEM. BIOL. V. 13 54 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 27820797 JRNL DOI 10.1038/NCHEMBIO.2237 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3314 - 5.2401 1.00 3060 148 0.1639 0.1973 REMARK 3 2 5.2401 - 4.1605 1.00 3033 148 0.1345 0.1726 REMARK 3 3 4.1605 - 3.6349 1.00 3010 143 0.1545 0.1830 REMARK 3 4 3.6349 - 3.3027 1.00 2997 142 0.1721 0.1856 REMARK 3 5 3.3027 - 3.0661 1.00 3004 143 0.1840 0.2243 REMARK 3 6 3.0661 - 2.8854 1.00 2980 141 0.1958 0.2547 REMARK 3 7 2.8854 - 2.7409 1.00 3010 148 0.2034 0.2669 REMARK 3 8 2.7409 - 2.6216 1.00 2990 141 0.2029 0.2826 REMARK 3 9 2.6216 - 2.5207 1.00 2981 148 0.1958 0.2712 REMARK 3 10 2.5207 - 2.4337 1.00 2988 142 0.1913 0.2566 REMARK 3 11 2.4337 - 2.3576 1.00 2974 134 0.1896 0.2558 REMARK 3 12 2.3576 - 2.2902 1.00 3008 153 0.1858 0.2251 REMARK 3 13 2.2902 - 2.2300 1.00 2981 131 0.1846 0.2459 REMARK 3 14 2.2300 - 2.1756 0.97 2862 150 0.1910 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5444 REMARK 3 ANGLE : 1.220 7448 REMARK 3 CHIRALITY : 0.047 834 REMARK 3 PLANARITY : 0.005 974 REMARK 3 DIHEDRAL : 12.002 1896 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43922 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 15.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.21800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3VYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% 5000MME, 200MM AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.53100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 -166.04 -162.38 REMARK 500 MET A 280 -165.06 -104.29 REMARK 500 HIS A 347 -63.41 -128.68 REMARK 500 ASN A 405 38.59 -153.79 REMARK 500 ASN B 204 -170.98 -171.93 REMARK 500 ASN B 227 64.24 -101.07 REMARK 500 HIS B 347 -60.66 -131.57 REMARK 500 ASN B 405 38.84 -148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DRW A 501 REMARK 610 POA A 503 REMARK 610 DRW B 501 REMARK 610 POA B 502 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DRW A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue POA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue POA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DUJ RELATED DB: PDB REMARK 900 RELATED ID: 5DU7 RELATED DB: PDB REMARK 900 RELATED ID: 5DVQ RELATED DB: PDB DBREF 5DVP A 58 407 UNP I6Y9J2 LDT2_MYCTU 58 407 DBREF 5DVP B 58 407 UNP I6Y9J2 LDT2_MYCTU 58 407 SEQRES 1 A 350 LEU VAL PRO LYS LEU THR ALA SER VAL THR ASP GLY ALA SEQRES 2 A 350 VAL GLY VAL THR VAL ASP ALA PRO VAL SER VAL THR ALA SEQRES 3 A 350 ALA ASP GLY VAL LEU ALA ALA VAL THR MET VAL ASN ASP SEQRES 4 A 350 ASN GLY ARG PRO VAL ALA GLY ARG LEU SER PRO ASP GLY SEQRES 5 A 350 LEU ARG TRP SER THR THR GLU GLN LEU GLY TYR ASN ARG SEQRES 6 A 350 ARG TYR THR LEU ASN ALA THR ALA LEU GLY LEU GLY GLY SEQRES 7 A 350 ALA ALA THR ARG GLN LEU THR PHE GLN THR SER SER PRO SEQRES 8 A 350 ALA HIS LEU THR MET PRO TYR VAL MET PRO GLY ASP GLY SEQRES 9 A 350 GLU VAL VAL GLY VAL GLY GLU PRO VAL ALA ILE ARG PHE SEQRES 10 A 350 ASP GLU ASN ILE ALA ASP ARG GLY ALA ALA GLU LYS ALA SEQRES 11 A 350 ILE LYS ILE THR THR ASN PRO PRO VAL GLU GLY ALA PHE SEQRES 12 A 350 TYR TRP LEU ASN ASN ARG GLU VAL ARG TRP ARG PRO GLU SEQRES 13 A 350 HIS PHE TRP LYS PRO GLY THR ALA VAL ASP VAL ALA VAL SEQRES 14 A 350 ASN THR TYR GLY VAL ASP LEU GLY GLU GLY MET PHE GLY SEQRES 15 A 350 GLU ASP ASN VAL GLN THR HIS PHE THR ILE GLY ASP GLU SEQRES 16 A 350 VAL ILE ALA THR ALA ASP ASP ASN THR LYS ILE LEU THR SEQRES 17 A 350 VAL ARG VAL ASN GLY GLU VAL VAL LYS SER MET PRO THR SEQRES 18 A 350 SER MET GLY LYS ASP SER THR PRO THR ALA ASN GLY ILE SEQRES 19 A 350 TYR ILE VAL GLY SER ARG TYR LYS HIS ILE ILE MET ASP SEQRES 20 A 350 SER SER THR TYR GLY VAL PRO VAL ASN SER PRO ASN GLY SEQRES 21 A 350 TYR ARG THR ASP VAL ASP TRP ALA THR GLN ILE SER TYR SEQRES 22 A 350 SER GLY VAL PHE VAL HIS SER ALA PRO TRP SER VAL GLY SEQRES 23 A 350 ALA GLN GLY HIS THR ASN THR SER HIS GLY CYS LEU ASN SEQRES 24 A 350 VAL SER PRO SER ASN ALA GLN TRP PHE TYR ASP HIS VAL SEQRES 25 A 350 LYS ARG GLY ASP ILE VAL GLU VAL VAL ASN THR VAL GLY SEQRES 26 A 350 GLY THR LEU PRO GLY ILE ASP GLY LEU GLY ASP TRP ASN SEQRES 27 A 350 ILE PRO TRP ASP GLN TRP ARG ALA GLY ASN ALA LYS SEQRES 1 B 350 LEU VAL PRO LYS LEU THR ALA SER VAL THR ASP GLY ALA SEQRES 2 B 350 VAL GLY VAL THR VAL ASP ALA PRO VAL SER VAL THR ALA SEQRES 3 B 350 ALA ASP GLY VAL LEU ALA ALA VAL THR MET VAL ASN ASP SEQRES 4 B 350 ASN GLY ARG PRO VAL ALA GLY ARG LEU SER PRO ASP GLY SEQRES 5 B 350 LEU ARG TRP SER THR THR GLU GLN LEU GLY TYR ASN ARG SEQRES 6 B 350 ARG TYR THR LEU ASN ALA THR ALA LEU GLY LEU GLY GLY SEQRES 7 B 350 ALA ALA THR ARG GLN LEU THR PHE GLN THR SER SER PRO SEQRES 8 B 350 ALA HIS LEU THR MET PRO TYR VAL MET PRO GLY ASP GLY SEQRES 9 B 350 GLU VAL VAL GLY VAL GLY GLU PRO VAL ALA ILE ARG PHE SEQRES 10 B 350 ASP GLU ASN ILE ALA ASP ARG GLY ALA ALA GLU LYS ALA SEQRES 11 B 350 ILE LYS ILE THR THR ASN PRO PRO VAL GLU GLY ALA PHE SEQRES 12 B 350 TYR TRP LEU ASN ASN ARG GLU VAL ARG TRP ARG PRO GLU SEQRES 13 B 350 HIS PHE TRP LYS PRO GLY THR ALA VAL ASP VAL ALA VAL SEQRES 14 B 350 ASN THR TYR GLY VAL ASP LEU GLY GLU GLY MET PHE GLY SEQRES 15 B 350 GLU ASP ASN VAL GLN THR HIS PHE THR ILE GLY ASP GLU SEQRES 16 B 350 VAL ILE ALA THR ALA ASP ASP ASN THR LYS ILE LEU THR SEQRES 17 B 350 VAL ARG VAL ASN GLY GLU VAL VAL LYS SER MET PRO THR SEQRES 18 B 350 SER MET GLY LYS ASP SER THR PRO THR ALA ASN GLY ILE SEQRES 19 B 350 TYR ILE VAL GLY SER ARG TYR LYS HIS ILE ILE MET ASP SEQRES 20 B 350 SER SER THR TYR GLY VAL PRO VAL ASN SER PRO ASN GLY SEQRES 21 B 350 TYR ARG THR ASP VAL ASP TRP ALA THR GLN ILE SER TYR SEQRES 22 B 350 SER GLY VAL PHE VAL HIS SER ALA PRO TRP SER VAL GLY SEQRES 23 B 350 ALA GLN GLY HIS THR ASN THR SER HIS GLY CYS LEU ASN SEQRES 24 B 350 VAL SER PRO SER ASN ALA GLN TRP PHE TYR ASP HIS VAL SEQRES 25 B 350 LYS ARG GLY ASP ILE VAL GLU VAL VAL ASN THR VAL GLY SEQRES 26 B 350 GLY THR LEU PRO GLY ILE ASP GLY LEU GLY ASP TRP ASN SEQRES 27 B 350 ILE PRO TRP ASP GLN TRP ARG ALA GLY ASN ALA LYS HET DRW A 501 9 HET SO4 A 502 5 HET POA A 503 3 HET DRW B 501 9 HET POA B 502 3 HETNAM DRW (2S,3R,4S)-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3- HETNAM 2 DRW METHYL-4-({(3S,5S)-5-[(SULFAMOYLAMINO) HETNAM 3 DRW METHYL]PYRROLIDIN-3-YL}SULFANYL)-3,4-DIHYDRO-2H- HETNAM 4 DRW PYRROLE-5-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM POA PHOSPHONOACETALDEHYDE HETSYN DRW DORIPENEM(OPEN FORM, PYRROLINE TAUTOMER FORM 2, SP3 HETSYN 2 DRW CONNECTION TO THIO AS S ISOMER) FORMUL 3 DRW 2(C15 H26 N4 O6 S2) FORMUL 4 SO4 O4 S 2- FORMUL 5 POA 2(C2 H5 O4 P) FORMUL 8 HOH *232(H2 O) HELIX 1 AA1 ASP A 180 ALA A 187 1 8 HELIX 2 AA2 SER A 306 GLY A 309 5 4 HELIX 3 AA3 PRO A 339 VAL A 342 5 4 HELIX 4 AA4 SER A 358 VAL A 369 1 12 HELIX 5 AA5 GLY A 392 ILE A 396 5 5 HELIX 6 AA6 PRO A 397 GLY A 404 1 8 HELIX 7 AA7 ASP B 180 ALA B 187 1 8 HELIX 8 AA8 SER B 306 GLY B 309 5 4 HELIX 9 AA9 PRO B 339 VAL B 342 5 4 HELIX 10 AB1 SER B 358 VAL B 369 1 12 HELIX 11 AB2 GLY B 392 ILE B 396 5 5 HELIX 12 AB3 PRO B 397 GLY B 404 1 8 SHEET 1 AA1 4 LYS A 61 ALA A 64 0 SHEET 2 AA1 4 SER A 80 ALA A 84 -1 O THR A 82 N THR A 63 SHEET 3 AA1 4 ARG A 111 THR A 114 -1 O TRP A 112 N VAL A 81 SHEET 4 AA1 4 GLY A 103 LEU A 105 -1 N ARG A 104 O SER A 113 SHEET 1 AA2 3 VAL A 87 VAL A 94 0 SHEET 2 AA2 3 ARG A 123 GLY A 132 -1 O ASN A 127 N THR A 92 SHEET 3 AA2 3 GLY A 135 GLN A 144 -1 O LEU A 141 N LEU A 126 SHEET 1 AA3 2 HIS A 150 THR A 152 0 SHEET 2 AA3 2 MET A 237 GLY A 239 1 O PHE A 238 N HIS A 150 SHEET 1 AA4 4 PRO A 154 MET A 157 0 SHEET 2 AA4 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 AA4 4 GLU A 207 PRO A 212 -1 O VAL A 208 N ILE A 172 SHEET 4 AA4 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209 SHEET 1 AA5 4 VAL A 163 VAL A 164 0 SHEET 2 AA5 4 VAL A 243 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 AA5 4 ALA A 221 VAL A 226 -1 N VAL A 224 O THR A 245 SHEET 4 AA5 4 ILE A 188 ASN A 193 -1 N ASN A 193 O ALA A 221 SHEET 1 AA6 5 GLU A 271 PRO A 277 0 SHEET 2 AA6 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 AA6 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 AA6 5 ILE A 374 VAL A 378 1 O GLU A 376 N ALA A 257 SHEET 5 AA6 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 AA7 4 ARG A 297 ASP A 304 0 SHEET 2 AA7 4 ARG A 319 GLN A 327 -1 O THR A 320 N MET A 303 SHEET 3 AA7 4 PHE A 334 SER A 337 -1 O VAL A 335 N THR A 326 SHEET 4 AA7 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 AA8 4 LYS B 61 ALA B 64 0 SHEET 2 AA8 4 SER B 80 ALA B 84 -1 O ALA B 84 N LYS B 61 SHEET 3 AA8 4 ARG B 111 THR B 114 -1 O TRP B 112 N VAL B 81 SHEET 4 AA8 4 GLY B 103 LEU B 105 -1 N ARG B 104 O SER B 113 SHEET 1 AA9 3 VAL B 87 VAL B 94 0 SHEET 2 AA9 3 ARG B 123 GLY B 132 -1 O THR B 125 N VAL B 94 SHEET 3 AA9 3 GLY B 135 GLN B 144 -1 O LEU B 141 N LEU B 126 SHEET 1 AB1 2 HIS B 150 THR B 152 0 SHEET 2 AB1 2 MET B 237 GLY B 239 1 O PHE B 238 N HIS B 150 SHEET 1 AB2 4 PRO B 154 MET B 157 0 SHEET 2 AB2 4 VAL B 170 PHE B 174 -1 O ARG B 173 N TYR B 155 SHEET 3 AB2 4 GLU B 207 PRO B 212 -1 O VAL B 208 N ILE B 172 SHEET 4 AB2 4 GLY B 198 TRP B 202 -1 N TYR B 201 O ARG B 209 SHEET 1 AB3 4 VAL B 163 VAL B 164 0 SHEET 2 AB3 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 AB3 4 ALA B 221 VAL B 226 -1 N VAL B 226 O VAL B 243 SHEET 4 AB3 4 ILE B 188 ASN B 193 -1 N ASN B 193 O ALA B 221 SHEET 1 AB4 5 GLU B 271 PRO B 277 0 SHEET 2 AB4 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276 SHEET 3 AB4 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 AB4 5 ILE B 374 VAL B 378 1 O ILE B 374 N ALA B 255 SHEET 5 AB4 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 AB5 4 ARG B 297 ASP B 304 0 SHEET 2 AB5 4 ARG B 319 GLN B 327 -1 O THR B 320 N MET B 303 SHEET 3 AB5 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 AB5 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK SG CYS A 354 CAJ DRW A 501 1555 1555 1.99 LINK SG CYS B 354 CAJ DRW B 501 1555 1555 1.96 CISPEP 1 MET A 157 PRO A 158 0 -2.31 CISPEP 2 ASN A 193 PRO A 194 0 1.87 CISPEP 3 MET B 157 PRO B 158 0 -0.70 CISPEP 4 ASN B 193 PRO B 194 0 -0.02 SITE 1 AC1 9 MET A 303 TYR A 318 HIS A 336 TRP A 340 SITE 2 AC1 9 SER A 351 HIS A 352 CYS A 354 ASN A 356 SITE 3 AC1 9 POA A 503 SITE 1 AC2 2 ARG A 371 HOH A 603 SITE 1 AC3 4 TYR A 318 SER A 331 HIS A 352 DRW A 501 SITE 1 AC4 4 TYR B 318 SER B 331 HIS B 352 DRW B 501 CRYST1 60.866 93.062 75.213 90.00 92.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016430 0.000000 0.000836 0.00000 SCALE2 0.000000 0.010746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013313 0.00000