HEADER HYDROLASE 22-SEP-15 5DW8 TITLE CRYSTAL STRUCTURE OF 2'AMP BOUND SAIMPASE-II COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL MONOPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYO-INOSITOL-1(OR 4)-MONOPHOSPHATASE; COMPND 5 EC: 3.1.3.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MSSA476; SOURCE 5 GENE: SAS1042; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI M15; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1007065; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS INOSITOL MONOPHOSPHATASE, SUHB, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DUTTA,S.BHATTACHARYYA,A.K.DAS REVDAT 2 20-MAR-24 5DW8 1 REMARK LINK REVDAT 1 09-DEC-15 5DW8 0 JRNL AUTH A.DUTTA,S.BHATTACHARYYA,A.K.DAS JRNL TITL CRYSTAL STRUCTURE OF 2'AMP BOUND SAIMPASE-II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.602 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.300 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.852 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4177 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3876 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5694 ; 1.728 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8902 ; 0.945 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 6.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;42.292 ;25.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;19.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4827 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 962 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.399 REMARK 200 RESOLUTION RANGE LOW (A) : 52.843 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13900 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : 0.42800 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0.05, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1 M BIS-TRIS PH 6.0, REMARK 280 20% (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.84350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 LEU A 26 REMARK 465 THR A 27 REMARK 465 ILE A 28 REMARK 465 GLU A 29 REMARK 465 THR A 30 REMARK 465 LYS A 31 REMARK 465 SER A 32 REMARK 465 ASN A 33 REMARK 465 PRO A 34 REMARK 465 PHE A 270 REMARK 465 LYS A 271 REMARK 465 ARG A 272 REMARK 465 LYS A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 LEU B 26 REMARK 465 THR B 27 REMARK 465 ILE B 28 REMARK 465 GLU B 29 REMARK 465 THR B 30 REMARK 465 LYS B 31 REMARK 465 SER B 32 REMARK 465 ASN B 33 REMARK 465 PRO B 34 REMARK 465 ASN B 35 REMARK 465 ASP B 36 REMARK 465 LEU B 37 REMARK 465 LYS B 271 REMARK 465 ARG B 272 REMARK 465 LYS B 273 REMARK 465 SER B 274 REMARK 465 LYS B 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 17 CD NE CZ NH1 NH2 REMARK 470 LYS A 76 CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ASN A 252 CB CG OD1 ND2 REMARK 470 GLU B 23 OE1 OE2 REMARK 470 LYS B 109 CD CE NZ REMARK 470 ASN B 252 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 410 O HOH B 448 1.33 REMARK 500 O HOH A 405 O HOH A 446 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 81 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 41 -64.76 84.45 REMARK 500 GLU A 96 -175.01 -171.71 REMARK 500 ILE A 163 -69.61 73.77 REMARK 500 GLN A 268 -72.83 -71.81 REMARK 500 GLN B 24 29.25 -59.16 REMARK 500 GLU B 96 -173.78 -179.43 REMARK 500 TYR B 111 -61.31 -131.03 REMARK 500 THR B 201 144.52 -174.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD1 REMARK 620 2 ASP A 83 OD2 45.7 REMARK 620 3 ILE A 85 O 91.8 84.1 REMARK 620 4 2AM A 302 O3P 124.4 78.8 76.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 ASP A 86 OD1 80.1 REMARK 620 3 ASP A 208 OD2 80.4 63.4 REMARK 620 4 2AM A 302 O3P 101.2 93.4 156.3 REMARK 620 5 2AM A 302 O2' 143.0 66.9 98.3 66.1 REMARK 620 6 HOH A 443 O 133.5 139.6 96.4 99.2 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 65 OE2 REMARK 620 2 ASP B 83 OD1 85.9 REMARK 620 3 ILE B 85 O 152.5 73.5 REMARK 620 4 2AM B 303 O2P 110.5 116.7 95.2 REMARK 620 5 HOH B 403 O 88.0 75.0 69.4 158.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 83 OD2 REMARK 620 2 ASP B 86 OD1 87.5 REMARK 620 3 ASP B 208 OD2 101.6 88.6 REMARK 620 4 2AM B 303 O2P 96.8 103.2 158.5 REMARK 620 5 2AM B 303 O2' 153.7 83.5 102.8 61.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2AM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2AM B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T0J RELATED DB: PDB REMARK 900 3T0J IS THE NATIVE STRUCTURE DBREF1 5DW8 A 1 275 UNP A0A0C5I0W4_STAAU DBREF2 5DW8 A A0A0C5I0W4 1 275 DBREF1 5DW8 B 1 275 UNP A0A0C5I0W4_STAAU DBREF2 5DW8 B A0A0C5I0W4 1 275 SEQADV 5DW8 HIS A -7 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS A -6 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS A -5 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS A -4 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS A -3 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS A -2 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 GLY A -1 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 SER A 0 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS B -7 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS B -6 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS B -5 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS B -4 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS B -3 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 HIS B -2 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 GLY B -1 UNP A0A0C5I0W EXPRESSION TAG SEQADV 5DW8 SER B 0 UNP A0A0C5I0W EXPRESSION TAG SEQRES 1 A 283 HIS HIS HIS HIS HIS HIS GLY SER MET ALA LEU TYR GLY SEQRES 2 A 283 PHE ALA GLN GLY LEU ILE GLN GLU ALA GLY ILE ARG ILE SEQRES 3 A 283 LYS GLN LEU MET GLU GLN ASN LEU THR ILE GLU THR LYS SEQRES 4 A 283 SER ASN PRO ASN ASP LEU VAL THR ASN VAL ASP LYS ALA SEQRES 5 A 283 THR GLU ASP PHE ILE PHE ASP THR ILE LEU GLU THR TYR SEQRES 6 A 283 PRO ASN HIS GLN VAL LEU GLY GLU GLU GLY HIS GLY HIS SEQRES 7 A 283 ASP ILE ASP THR SER LYS GLY THR VAL TRP VAL VAL ASP SEQRES 8 A 283 PRO ILE ASP GLY THR LEU ASN PHE VAL HIS GLN GLN GLU SEQRES 9 A 283 ASN PHE ALA ILE SER ILE GLY ILE TYR ILE ASP GLY LYS SEQRES 10 A 283 PRO TYR ALA GLY PHE VAL TYR ASP VAL MET ALA ASP VAL SEQRES 11 A 283 LEU TYR HIS ALA LYS VAL GLY GLU GLY ALA TYR ARG GLY SEQRES 12 A 283 SER GLN PRO LEU LYS PRO LEU ASN ASP SER ASN LEU ARG SEQRES 13 A 283 GLN SER ILE ILE GLY ILE ASN PRO ASN TRP LEU THR LYS SEQRES 14 A 283 PRO ILE LEU GLY GLU ILE PHE LYS GLU ILE VAL ASN ASP SEQRES 15 A 283 SER ARG SER ALA ARG ALA TYR GLY SER ALA ALA LEU GLU SEQRES 16 A 283 ILE VAL SER VAL ALA THR GLY ASN LEU GLU ALA TYR MET SEQRES 17 A 283 THR PRO ARG LEU GLN PRO TRP ASP PHE ALA GLY GLY LEU SEQRES 18 A 283 VAL ILE LEU TYR GLU VAL ASN GLY GLN ALA SER ASN LEU SEQRES 19 A 283 LEU GLY GLU PRO LEU THR ILE SER GLY PRO ASN SER ILE SEQRES 20 A 283 LEU VAL GLY ASN ARG GLY LEU HIS GLN GLU ILE SER ASN SEQRES 21 A 283 ASP TYR LEU GLU PRO HIS HIS ASP ALA LEU ILE GLN LEU SEQRES 22 A 283 HIS GLU GLN ARG PHE LYS ARG LYS SER LYS SEQRES 1 B 283 HIS HIS HIS HIS HIS HIS GLY SER MET ALA LEU TYR GLY SEQRES 2 B 283 PHE ALA GLN GLY LEU ILE GLN GLU ALA GLY ILE ARG ILE SEQRES 3 B 283 LYS GLN LEU MET GLU GLN ASN LEU THR ILE GLU THR LYS SEQRES 4 B 283 SER ASN PRO ASN ASP LEU VAL THR ASN VAL ASP LYS ALA SEQRES 5 B 283 THR GLU ASP PHE ILE PHE ASP THR ILE LEU GLU THR TYR SEQRES 6 B 283 PRO ASN HIS GLN VAL LEU GLY GLU GLU GLY HIS GLY HIS SEQRES 7 B 283 ASP ILE ASP THR SER LYS GLY THR VAL TRP VAL VAL ASP SEQRES 8 B 283 PRO ILE ASP GLY THR LEU ASN PHE VAL HIS GLN GLN GLU SEQRES 9 B 283 ASN PHE ALA ILE SER ILE GLY ILE TYR ILE ASP GLY LYS SEQRES 10 B 283 PRO TYR ALA GLY PHE VAL TYR ASP VAL MET ALA ASP VAL SEQRES 11 B 283 LEU TYR HIS ALA LYS VAL GLY GLU GLY ALA TYR ARG GLY SEQRES 12 B 283 SER GLN PRO LEU LYS PRO LEU ASN ASP SER ASN LEU ARG SEQRES 13 B 283 GLN SER ILE ILE GLY ILE ASN PRO ASN TRP LEU THR LYS SEQRES 14 B 283 PRO ILE LEU GLY GLU ILE PHE LYS GLU ILE VAL ASN ASP SEQRES 15 B 283 SER ARG SER ALA ARG ALA TYR GLY SER ALA ALA LEU GLU SEQRES 16 B 283 ILE VAL SER VAL ALA THR GLY ASN LEU GLU ALA TYR MET SEQRES 17 B 283 THR PRO ARG LEU GLN PRO TRP ASP PHE ALA GLY GLY LEU SEQRES 18 B 283 VAL ILE LEU TYR GLU VAL ASN GLY GLN ALA SER ASN LEU SEQRES 19 B 283 LEU GLY GLU PRO LEU THR ILE SER GLY PRO ASN SER ILE SEQRES 20 B 283 LEU VAL GLY ASN ARG GLY LEU HIS GLN GLU ILE SER ASN SEQRES 21 B 283 ASP TYR LEU GLU PRO HIS HIS ASP ALA LEU ILE GLN LEU SEQRES 22 B 283 HIS GLU GLN ARG PHE LYS ARG LYS SER LYS HET CA A 301 1 HET 2AM A 302 23 HET CA A 303 1 HET GOL A 304 6 HET CA B 301 1 HET CA B 302 1 HET 2AM B 303 23 HETNAM CA CALCIUM ION HETNAM 2AM ADENOSINE-2'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 4(CA 2+) FORMUL 4 2AM 2(C10 H14 N5 O7 P) FORMUL 6 GOL C3 H8 O3 FORMUL 10 HOH *105(H2 O) HELIX 1 AA1 ALA A 2 ASN A 25 1 24 HELIX 2 AA2 ASP A 36 TYR A 57 1 22 HELIX 3 AA3 GLY A 87 GLN A 95 1 9 HELIX 4 AA4 ASN A 146 GLN A 149 5 4 HELIX 5 AA5 ASN A 155 LYS A 161 5 7 HELIX 6 AA6 ILE A 163 SER A 175 1 13 HELIX 7 AA7 SER A 183 THR A 193 1 11 HELIX 8 AA8 GLN A 205 VAL A 219 1 15 HELIX 9 AA9 ASN A 243 TYR A 254 1 12 HELIX 10 AB1 LEU A 255 PRO A 257 5 3 HELIX 11 AB2 HIS A 258 ARG A 269 1 12 HELIX 12 AB3 MET B 1 GLN B 24 1 24 HELIX 13 AB4 THR B 39 TYR B 57 1 19 HELIX 14 AB5 GLY B 87 GLN B 95 1 9 HELIX 15 AB6 ASN B 146 GLN B 149 5 4 HELIX 16 AB7 ASN B 155 THR B 160 5 6 HELIX 17 AB8 LYS B 161 SER B 175 1 15 HELIX 18 AB9 SER B 183 THR B 193 1 11 HELIX 19 AC1 GLN B 205 VAL B 219 1 15 HELIX 20 AC2 ASN B 243 LEU B 255 1 13 HELIX 21 AC3 HIS B 258 PHE B 270 1 13 SHEET 1 AA1 7 GLN A 61 GLY A 64 0 SHEET 2 AA1 7 THR A 78 ASP A 86 1 O TRP A 80 N LEU A 63 SHEET 3 AA1 7 ALA A 99 ILE A 106 -1 O ALA A 99 N ASP A 86 SHEET 4 AA1 7 LYS A 109 ASP A 117 -1 O LYS A 109 N ILE A 106 SHEET 5 AA1 7 VAL A 122 LYS A 127 -1 O TYR A 124 N VAL A 115 SHEET 6 AA1 7 ALA A 132 ARG A 134 -1 O TYR A 133 N HIS A 125 SHEET 7 AA1 7 GLN A 137 PRO A 138 -1 O GLN A 137 N ARG A 134 SHEET 1 AA2 5 SER A 177 ARG A 179 0 SHEET 2 AA2 5 ILE A 151 GLY A 153 1 N ILE A 152 O SER A 177 SHEET 3 AA2 5 ALA A 198 LEU A 204 1 O ALA A 198 N GLY A 153 SHEET 4 AA2 5 ASN A 237 GLY A 242 -1 O VAL A 241 N TYR A 199 SHEET 5 AA2 5 GLN A 222 SER A 224 -1 N SER A 224 O LEU A 240 SHEET 1 AA3 7 GLN B 61 LEU B 63 0 SHEET 2 AA3 7 THR B 78 ASP B 86 1 O THR B 78 N GLN B 61 SHEET 3 AA3 7 ALA B 99 ILE B 106 -1 O ALA B 99 N ASP B 86 SHEET 4 AA3 7 LYS B 109 ASP B 117 -1 O LYS B 109 N ILE B 106 SHEET 5 AA3 7 VAL B 122 LYS B 127 -1 O TYR B 124 N VAL B 115 SHEET 6 AA3 7 ALA B 132 ARG B 134 -1 O TYR B 133 N HIS B 125 SHEET 7 AA3 7 GLN B 137 PRO B 138 -1 O GLN B 137 N ARG B 134 SHEET 1 AA4 5 SER B 177 ARG B 179 0 SHEET 2 AA4 5 ILE B 151 GLY B 153 1 N ILE B 152 O SER B 177 SHEET 3 AA4 5 ALA B 198 LEU B 204 1 O MET B 200 N GLY B 153 SHEET 4 AA4 5 ASN B 237 GLY B 242 -1 O ILE B 239 N THR B 201 SHEET 5 AA4 5 GLN B 222 SER B 224 -1 N GLN B 222 O GLY B 242 LINK OD1 ASP A 83 CA CA A 301 1555 1555 2.27 LINK OD2 ASP A 83 CA CA A 301 1555 1555 3.11 LINK OD2 ASP A 83 CA CA A 303 1555 1555 2.25 LINK O ILE A 85 CA CA A 301 1555 1555 2.34 LINK OD1 ASP A 86 CA CA A 303 1555 1555 3.00 LINK OD2 ASP A 208 CA CA A 303 1555 1555 2.26 LINK CA CA A 301 O3P 2AM A 302 1555 1555 2.43 LINK O3P 2AM A 302 CA CA A 303 1555 1555 2.35 LINK O2' 2AM A 302 CA CA A 303 1555 1555 2.56 LINK CA CA A 303 O HOH A 443 1555 1555 2.96 LINK OE2 GLU B 65 CA CA B 302 1555 1555 2.45 LINK OD2 ASP B 83 CA CA B 301 1555 1555 2.07 LINK OD1 ASP B 83 CA CA B 302 1555 1555 2.56 LINK O ILE B 85 CA CA B 302 1555 1555 2.29 LINK OD1 ASP B 86 CA CA B 301 1555 1555 2.47 LINK OD2 ASP B 208 CA CA B 301 1555 1555 2.19 LINK CA CA B 301 O2P 2AM B 303 1555 1555 2.69 LINK CA CA B 301 O2' 2AM B 303 1555 1555 2.48 LINK CA CA B 302 O2P 2AM B 303 1555 1555 1.98 LINK CA CA B 302 O HOH B 403 1555 1555 2.07 SITE 1 AC1 5 GLU A 65 ASP A 83 ILE A 85 2AM A 302 SITE 2 AC1 5 CA A 303 SITE 1 AC2 14 ASP A 83 ILE A 85 ASP A 86 GLY A 87 SITE 2 AC2 14 THR A 88 GLY A 182 ALA A 184 ARG A 203 SITE 3 AC2 14 ASP A 208 CA A 301 CA A 303 GOL A 304 SITE 4 AC2 14 HOH A 440 HOH B 425 SITE 1 AC3 6 ASP A 83 ASP A 86 ASP A 208 CA A 301 SITE 2 AC3 6 2AM A 302 HOH A 443 SITE 1 AC4 10 ILE A 154 ASN A 155 ALA A 180 TYR A 181 SITE 2 AC4 10 GLY A 182 GLU A 187 TYR A 199 2AM A 302 SITE 3 AC4 10 HOH A 431 HOH A 436 SITE 1 AC5 5 ASP B 83 ASP B 86 ASP B 208 CA B 302 SITE 2 AC5 5 2AM B 303 SITE 1 AC6 6 GLU B 65 ASP B 83 ILE B 85 CA B 301 SITE 2 AC6 6 2AM B 303 HOH B 403 SITE 1 AC7 13 GLU B 65 ASP B 83 ILE B 85 ASP B 86 SITE 2 AC7 13 GLY B 87 THR B 88 ALA B 184 ARG B 203 SITE 3 AC7 13 LEU B 204 ASP B 208 CA B 301 CA B 302 SITE 4 AC7 13 HOH B 408 CRYST1 49.008 105.687 53.313 90.00 101.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020405 0.000000 0.004305 0.00000 SCALE2 0.000000 0.009462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019170 0.00000