HEADER OXIDOREDUCTASE 23-SEP-15 5DWV TITLE CRYSTAL STRUCTURE OF THE LUCIFERASE COMPLEXED WITH SUBSTRATE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERIN 4-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LUCIFERASE; COMPND 5 EC: 1.13.12.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTINUS PYRALIS; SOURCE 3 ORGANISM_COMMON: COMMON EASTERN FIREFLY; SOURCE 4 ORGANISM_TAXID: 7054; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LUCIFERASE, COMPLEX, SUBSTRATE ANALOGUE, PHOTINUS PYRALIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SU,Z.LI,Z.YUAN,L.GU REVDAT 2 20-MAR-24 5DWV 1 REMARK REVDAT 1 28-SEP-16 5DWV 0 JRNL AUTH J.SU,Z.LI,Z.YUAN,L.GU JRNL TITL CRYSTAL STRUCTURE OF THE LUCIFERASE COMPLEXED WITH SUBSTRATE JRNL TITL 2 ANALOGUE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10PRE_2124: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9649 - 5.5259 1.00 1516 141 0.1697 0.2038 REMARK 3 2 5.5259 - 4.3901 1.00 1485 142 0.1540 0.1708 REMARK 3 3 4.3901 - 3.8363 1.00 1481 145 0.1484 0.2123 REMARK 3 4 3.8363 - 3.4861 1.00 1479 140 0.1601 0.2071 REMARK 3 5 3.4861 - 3.2365 1.00 1476 143 0.1863 0.2582 REMARK 3 6 3.2365 - 3.0459 1.00 1458 146 0.1924 0.2382 REMARK 3 7 3.0459 - 2.8934 1.00 1490 141 0.1921 0.2280 REMARK 3 8 2.8934 - 2.7676 1.00 1472 144 0.2021 0.2794 REMARK 3 9 2.7676 - 2.6611 1.00 1472 140 0.2011 0.2643 REMARK 3 10 2.6611 - 2.5693 1.00 1465 145 0.1952 0.2637 REMARK 3 11 2.5693 - 2.4890 1.00 1470 139 0.1979 0.2519 REMARK 3 12 2.4890 - 2.4179 1.00 1452 146 0.2105 0.2639 REMARK 3 13 2.4179 - 2.3542 1.00 1472 137 0.2110 0.2832 REMARK 3 14 2.3542 - 2.2968 1.00 1455 146 0.2263 0.2741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3492 REMARK 3 ANGLE : 1.087 4734 REMARK 3 CHIRALITY : 0.064 524 REMARK 3 PLANARITY : 0.005 609 REMARK 3 DIHEDRAL : 14.526 2071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 165729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LI2SO4, PEG8000, TRIS, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.23250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.11625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.34875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 GLN A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 VAL A -7 REMARK 465 LEU A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 SER A 201 REMARK 465 THR A 202 REMARK 465 LEU A 438 REMARK 465 LYS A 439 REMARK 465 SER A 440 REMARK 465 LEU A 441 REMARK 465 ILE A 442 REMARK 465 LYS A 443 REMARK 465 TYR A 444 REMARK 465 LYS A 445 REMARK 465 GLY A 446 REMARK 465 TYR A 447 REMARK 465 GLN A 448 REMARK 465 VAL A 449 REMARK 465 ALA A 450 REMARK 465 PRO A 451 REMARK 465 ALA A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 GLU A 455 REMARK 465 SER A 456 REMARK 465 ILE A 457 REMARK 465 LEU A 458 REMARK 465 LEU A 459 REMARK 465 GLN A 460 REMARK 465 HIS A 461 REMARK 465 PRO A 462 REMARK 465 ASN A 463 REMARK 465 ILE A 464 REMARK 465 PHE A 465 REMARK 465 ASP A 466 REMARK 465 ALA A 467 REMARK 465 GLY A 468 REMARK 465 VAL A 469 REMARK 465 ALA A 470 REMARK 465 GLY A 471 REMARK 465 LEU A 472 REMARK 465 PRO A 473 REMARK 465 ASP A 474 REMARK 465 ASP A 475 REMARK 465 ASP A 476 REMARK 465 ALA A 477 REMARK 465 GLY A 478 REMARK 465 GLU A 479 REMARK 465 LEU A 480 REMARK 465 PRO A 481 REMARK 465 ALA A 482 REMARK 465 ALA A 483 REMARK 465 VAL A 484 REMARK 465 VAL A 485 REMARK 465 VAL A 486 REMARK 465 LEU A 487 REMARK 465 GLU A 488 REMARK 465 HIS A 489 REMARK 465 GLY A 490 REMARK 465 LYS A 491 REMARK 465 THR A 492 REMARK 465 MET A 493 REMARK 465 THR A 494 REMARK 465 GLU A 495 REMARK 465 LYS A 496 REMARK 465 GLU A 497 REMARK 465 ILE A 498 REMARK 465 VAL A 499 REMARK 465 ASP A 500 REMARK 465 TYR A 501 REMARK 465 VAL A 502 REMARK 465 ALA A 503 REMARK 465 SER A 504 REMARK 465 GLN A 505 REMARK 465 VAL A 506 REMARK 465 THR A 507 REMARK 465 THR A 508 REMARK 465 ALA A 509 REMARK 465 LYS A 510 REMARK 465 LYS A 511 REMARK 465 LEU A 512 REMARK 465 ARG A 513 REMARK 465 GLY A 514 REMARK 465 GLY A 515 REMARK 465 VAL A 516 REMARK 465 VAL A 517 REMARK 465 PHE A 518 REMARK 465 VAL A 519 REMARK 465 ASP A 520 REMARK 465 GLU A 521 REMARK 465 VAL A 522 REMARK 465 PRO A 523 REMARK 465 LYS A 524 REMARK 465 GLY A 525 REMARK 465 LEU A 526 REMARK 465 THR A 527 REMARK 465 GLY A 528 REMARK 465 LYS A 529 REMARK 465 LEU A 530 REMARK 465 ASP A 531 REMARK 465 ALA A 532 REMARK 465 ARG A 533 REMARK 465 LYS A 534 REMARK 465 ILE A 535 REMARK 465 ARG A 536 REMARK 465 GLU A 537 REMARK 465 ILE A 538 REMARK 465 LEU A 539 REMARK 465 ILE A 540 REMARK 465 LYS A 541 REMARK 465 ALA A 542 REMARK 465 LYS A 543 REMARK 465 LYS A 544 REMARK 465 GLY A 545 REMARK 465 GLY A 546 REMARK 465 LYS A 547 REMARK 465 SER A 548 REMARK 465 LYS A 549 REMARK 465 LEU A 550 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 107 O HOH A 701 1.88 REMARK 500 O HOH A 932 O HOH A 950 1.90 REMARK 500 O HOH A 857 O HOH A 911 1.95 REMARK 500 O PRO A 233 O HOH A 702 1.96 REMARK 500 O PHE A 186 O HOH A 703 1.96 REMARK 500 ND2 ASN A 229 O HOH A 704 1.97 REMARK 500 OE2 GLU A 83 O HOH A 705 2.01 REMARK 500 O HOH A 734 O HOH A 923 2.06 REMARK 500 O HOH A 883 O HOH A 907 2.09 REMARK 500 O HOH A 767 O HOH A 901 2.09 REMARK 500 O ALA A 105 O HOH A 706 2.10 REMARK 500 O HOH A 843 O HOH A 947 2.11 REMARK 500 O HOH A 786 O HOH A 930 2.12 REMARK 500 O HOH A 824 O HOH A 946 2.13 REMARK 500 O HOH A 883 O HOH A 896 2.13 REMARK 500 O HOH A 912 O HOH A 921 2.14 REMARK 500 OD1 ASP A 377 O HOH A 707 2.16 REMARK 500 N ASN A 110 OE2 GLU A 113 2.18 REMARK 500 NZ LYS A 372 O HOH A 708 2.18 REMARK 500 O PRO A 11 O HOH A 709 2.19 REMARK 500 N ASP A 3 O HOH A 710 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 900 O HOH A 909 3455 1.89 REMARK 500 O HOH A 719 O HOH A 825 2344 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 264 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO A 318 C - N - CA ANGL. DEV. = 16.6 DEGREES REMARK 500 PRO A 318 C - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 143.02 -171.74 REMARK 500 ASN A 106 104.86 -47.41 REMARK 500 ASP A 153 50.55 -99.88 REMARK 500 ALA A 317 -128.75 65.95 REMARK 500 THR A 346 -64.78 64.49 REMARK 500 PHE A 368 -2.86 72.63 REMARK 500 ASN A 385 6.97 45.36 REMARK 500 ASN A 404 66.68 -151.63 REMARK 500 ASP A 427 -161.89 -104.28 REMARK 500 GLU A 430 37.19 75.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 955 DISTANCE = 6.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5J4 A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DV9 RELATED DB: PDB DBREF 5DWV A 1 550 UNP P08659 LUCI_PHOPY 1 550 SEQADV 5DWV MET A -22 UNP P08659 EXPRESSION TAG SEQADV 5DWV GLY A -21 UNP P08659 EXPRESSION TAG SEQADV 5DWV SER A -20 UNP P08659 EXPRESSION TAG SEQADV 5DWV SER A -19 UNP P08659 EXPRESSION TAG SEQADV 5DWV HIS A -18 UNP P08659 EXPRESSION TAG SEQADV 5DWV HIS A -17 UNP P08659 EXPRESSION TAG SEQADV 5DWV HIS A -16 UNP P08659 EXPRESSION TAG SEQADV 5DWV HIS A -15 UNP P08659 EXPRESSION TAG SEQADV 5DWV HIS A -14 UNP P08659 EXPRESSION TAG SEQADV 5DWV HIS A -13 UNP P08659 EXPRESSION TAG SEQADV 5DWV SER A -12 UNP P08659 EXPRESSION TAG SEQADV 5DWV GLN A -11 UNP P08659 EXPRESSION TAG SEQADV 5DWV ASP A -10 UNP P08659 EXPRESSION TAG SEQADV 5DWV LEU A -9 UNP P08659 EXPRESSION TAG SEQADV 5DWV GLU A -8 UNP P08659 EXPRESSION TAG SEQADV 5DWV VAL A -7 UNP P08659 EXPRESSION TAG SEQADV 5DWV LEU A -6 UNP P08659 EXPRESSION TAG SEQADV 5DWV PHE A -5 UNP P08659 EXPRESSION TAG SEQADV 5DWV GLN A -4 UNP P08659 EXPRESSION TAG SEQADV 5DWV GLY A -3 UNP P08659 EXPRESSION TAG SEQADV 5DWV PRO A -2 UNP P08659 EXPRESSION TAG SEQADV 5DWV GLY A -1 UNP P08659 EXPRESSION TAG SEQADV 5DWV SER A 0 UNP P08659 EXPRESSION TAG SEQRES 1 A 573 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 573 LEU GLU VAL LEU PHE GLN GLY PRO GLY SER MET GLU ASP SEQRES 3 A 573 ALA LYS ASN ILE LYS LYS GLY PRO ALA PRO PHE TYR PRO SEQRES 4 A 573 LEU GLU ASP GLY THR ALA GLY GLU GLN LEU HIS LYS ALA SEQRES 5 A 573 MET LYS ARG TYR ALA LEU VAL PRO GLY THR ILE ALA PHE SEQRES 6 A 573 THR ASP ALA HIS ILE GLU VAL ASN ILE THR TYR ALA GLU SEQRES 7 A 573 TYR PHE GLU MET SER VAL ARG LEU ALA GLU ALA MET LYS SEQRES 8 A 573 ARG TYR GLY LEU ASN THR ASN HIS ARG ILE VAL VAL CYS SEQRES 9 A 573 SER GLU ASN SER LEU GLN PHE PHE MET PRO VAL LEU GLY SEQRES 10 A 573 ALA LEU PHE ILE GLY VAL ALA VAL ALA PRO ALA ASN ASP SEQRES 11 A 573 ILE TYR ASN GLU ARG GLU LEU LEU ASN SER MET ASN ILE SEQRES 12 A 573 SER GLN PRO THR VAL VAL PHE VAL SER LYS LYS GLY LEU SEQRES 13 A 573 GLN LYS ILE LEU ASN VAL GLN LYS LYS LEU PRO ILE ILE SEQRES 14 A 573 GLN LYS ILE ILE ILE MET ASP SER LYS THR ASP TYR GLN SEQRES 15 A 573 GLY PHE GLN SER MET TYR THR PHE VAL THR SER HIS LEU SEQRES 16 A 573 PRO PRO GLY PHE ASN GLU TYR ASP PHE VAL PRO GLU SER SEQRES 17 A 573 PHE ASP ARG ASP LYS THR ILE ALA LEU ILE MET ASN SER SEQRES 18 A 573 SER GLY SER THR GLY LEU PRO LYS GLY VAL ALA LEU PRO SEQRES 19 A 573 HIS ARG THR ALA CYS VAL ARG PHE SER HIS ALA ARG ASP SEQRES 20 A 573 PRO ILE PHE GLY ASN GLN ILE ILE PRO ASP THR ALA ILE SEQRES 21 A 573 LEU SER VAL VAL PRO PHE HIS HIS GLY PHE GLY MET PHE SEQRES 22 A 573 THR THR LEU GLY TYR LEU ILE CYS GLY PHE ARG VAL VAL SEQRES 23 A 573 LEU MET TYR ARG PHE GLU GLU GLU LEU PHE LEU ARG SER SEQRES 24 A 573 LEU GLN ASP TYR LYS ILE GLN SER ALA LEU LEU VAL PRO SEQRES 25 A 573 THR LEU PHE SER PHE PHE ALA LYS SER THR LEU ILE ASP SEQRES 26 A 573 LYS TYR ASP LEU SER ASN LEU HIS GLU ILE ALA SER GLY SEQRES 27 A 573 GLY ALA PRO LEU SER LYS GLU VAL GLY GLU ALA VAL ALA SEQRES 28 A 573 LYS ARG PHE HIS LEU PRO GLY ILE ARG GLN GLY TYR GLY SEQRES 29 A 573 LEU THR GLU THR THR SER ALA ILE LEU ILE THR PRO GLU SEQRES 30 A 573 GLY ASP ASP LYS PRO GLY ALA VAL GLY LYS VAL VAL PRO SEQRES 31 A 573 PHE PHE GLU ALA LYS VAL VAL ASP LEU ASP THR GLY LYS SEQRES 32 A 573 THR LEU GLY VAL ASN GLN ARG GLY GLU LEU CYS VAL ARG SEQRES 33 A 573 GLY PRO MET ILE MET SER GLY TYR VAL ASN ASN PRO GLU SEQRES 34 A 573 ALA THR ASN ALA LEU ILE ASP LYS ASP GLY TRP LEU HIS SEQRES 35 A 573 SER GLY ASP ILE ALA TYR TRP ASP GLU ASP GLU HIS PHE SEQRES 36 A 573 PHE ILE VAL ASP ARG LEU LYS SER LEU ILE LYS TYR LYS SEQRES 37 A 573 GLY TYR GLN VAL ALA PRO ALA GLU LEU GLU SER ILE LEU SEQRES 38 A 573 LEU GLN HIS PRO ASN ILE PHE ASP ALA GLY VAL ALA GLY SEQRES 39 A 573 LEU PRO ASP ASP ASP ALA GLY GLU LEU PRO ALA ALA VAL SEQRES 40 A 573 VAL VAL LEU GLU HIS GLY LYS THR MET THR GLU LYS GLU SEQRES 41 A 573 ILE VAL ASP TYR VAL ALA SER GLN VAL THR THR ALA LYS SEQRES 42 A 573 LYS LEU ARG GLY GLY VAL VAL PHE VAL ASP GLU VAL PRO SEQRES 43 A 573 LYS GLY LEU THR GLY LYS LEU ASP ALA ARG LYS ILE ARG SEQRES 44 A 573 GLU ILE LEU ILE LYS ALA LYS LYS GLY GLY LYS SER LYS SEQRES 45 A 573 LEU HET 5J4 A 601 20 HETNAM 5J4 2-[6-(CYCLOBUTA-1,3-DIEN-1-YLAMINO)-1,3-BENZOTHIAZOL-2- HETNAM 2 5J4 YL]-1,3-THIAZOL-4-OL FORMUL 2 5J4 C14 H9 N3 O S2 FORMUL 3 HOH *255(H2 O) HELIX 1 AA1 THR A 21 LEU A 35 1 15 HELIX 2 AA2 TYR A 53 GLY A 71 1 19 HELIX 3 AA3 PHE A 88 ILE A 98 1 11 HELIX 4 AA4 ASN A 110 GLN A 122 1 13 HELIX 5 AA5 GLY A 132 LEU A 143 1 12 HELIX 6 AA6 SER A 163 SER A 170 1 8 HELIX 7 AA7 HIS A 212 ASP A 224 1 13 HELIX 8 AA8 HIS A 245 CYS A 258 1 14 HELIX 9 AA9 GLU A 269 TYR A 280 1 12 HELIX 10 AB1 VAL A 288 SER A 298 1 11 HELIX 11 AB2 LEU A 300 TYR A 304 5 5 HELIX 12 AB3 SER A 320 PHE A 331 1 12 HELIX 13 AB4 THR A 343 THR A 346 5 4 HELIX 14 AB5 ASN A 404 ILE A 412 1 9 SHEET 1 AA1 5 LYS A 8 LYS A 9 0 SHEET 2 AA1 5 GLU A 370 VAL A 374 -1 O ALA A 371 N LYS A 8 SHEET 3 AA1 5 GLY A 388 ARG A 393 -1 O GLU A 389 N VAL A 374 SHEET 4 AA1 5 LEU A 418 TRP A 426 -1 O LEU A 418 N VAL A 392 SHEET 5 AA1 5 PHE A 432 VAL A 435 -1 O VAL A 435 N ILE A 423 SHEET 1 AA2 9 ASN A 50 THR A 52 0 SHEET 2 AA2 9 ILE A 40 ASP A 44 -1 N PHE A 42 O ILE A 51 SHEET 3 AA2 9 ARG A 261 LEU A 264 1 O VAL A 262 N ALA A 41 SHEET 4 AA2 9 ALA A 236 SER A 239 1 N ILE A 237 O VAL A 263 SHEET 5 AA2 9 SER A 284 LEU A 286 1 O LEU A 286 N LEU A 238 SHEET 6 AA2 9 GLU A 311 SER A 314 1 O ALA A 313 N ALA A 285 SHEET 7 AA2 9 ARG A 337 GLY A 341 1 O ARG A 337 N ILE A 312 SHEET 8 AA2 9 ALA A 348 ILE A 351 -1 O LEU A 350 N TYR A 340 SHEET 9 AA2 9 LYS A 364 VAL A 365 -1 O LYS A 364 N ILE A 351 SHEET 1 AA3 4 ALA A 101 ALA A 105 0 SHEET 2 AA3 4 ARG A 77 CYS A 81 1 N ILE A 78 O ALA A 103 SHEET 3 AA3 4 VAL A 125 VAL A 128 1 O PHE A 127 N VAL A 79 SHEET 4 AA3 4 LYS A 148 ILE A 151 1 O ILE A 150 N VAL A 126 SHEET 1 AA4 3 ILE A 192 ASN A 197 0 SHEET 2 AA4 3 GLY A 207 PRO A 211 -1 O LEU A 210 N LEU A 194 SHEET 3 AA4 3 GLY A 400 TYR A 401 -1 O GLY A 400 N ALA A 209 CISPEP 1 ASP A 3 ALA A 4 0 24.24 CISPEP 2 SER A 314 GLY A 315 0 -0.69 CISPEP 3 ALA A 317 PRO A 318 0 -14.16 SITE 1 AC1 13 HIS A 245 GLY A 246 PHE A 247 SER A 314 SITE 2 AC1 13 GLY A 315 ARG A 337 GLY A 339 GLY A 341 SITE 3 AC1 13 LEU A 342 THR A 343 SER A 347 ALA A 348 SITE 4 AC1 13 HOH A 729 CRYST1 73.101 73.101 96.465 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013680 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010366 0.00000