HEADER LYASE 23-SEP-15 5DX5 TITLE CRYSTAL STRUCTURE OF METHIONINE GAMMA-LYASE FROM CLOSTRIDIUM TITLE 2 SPOROGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE GAMMA-LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.4.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SPOROGENES; SOURCE 3 ORGANISM_TAXID: 1509; SOURCE 4 GENE: MEGL, CLOSPO_00030; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS METHIONINE GAMMA-LYASE, LYASE, CLOSTRIDIUM SPOROGENES EXPDTA X-RAY DIFFRACTION AUTHOR S.V.REVTOVICH,A.D.NIKULIN,E.A.MOROZOVA,N.V.ANUFRIEVA,T.V.DEMIDKINA REVDAT 3 10-JAN-24 5DX5 1 REMARK REVDAT 2 20-JAN-16 5DX5 1 JRNL REVDAT 1 13-JAN-16 5DX5 0 JRNL AUTH S.REVTOVICH,N.ANUFRIEVA,E.MOROZOVA,V.KULIKOVA,A.NIKULIN, JRNL AUTH 2 T.DEMIDKINA JRNL TITL STRUCTURE OF METHIONINE GAMMA-LYASE FROM CLOSTRIDIUM JRNL TITL 2 SPOROGENES. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 65 2016 JRNL REFN ESSN 2053-230X JRNL PMID 26750487 JRNL DOI 10.1107/S2053230X15023869 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.250 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 57225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.630 REMARK 3 FREE R VALUE TEST SET COUNT : 2075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5534 - 5.8383 0.99 3664 131 0.1583 0.2219 REMARK 3 2 5.8383 - 4.6355 0.99 3655 141 0.1464 0.2116 REMARK 3 3 4.6355 - 4.0499 1.00 3689 135 0.1226 0.1774 REMARK 3 4 4.0499 - 3.6798 1.00 3701 137 0.1344 0.1905 REMARK 3 5 3.6798 - 3.4162 0.99 3650 138 0.1447 0.2059 REMARK 3 6 3.4162 - 3.2148 1.00 3678 145 0.1573 0.2300 REMARK 3 7 3.2148 - 3.0538 1.00 3670 142 0.1683 0.1990 REMARK 3 8 3.0538 - 2.9209 1.00 3704 143 0.1711 0.2431 REMARK 3 9 2.9209 - 2.8085 1.00 3689 138 0.1785 0.2183 REMARK 3 10 2.8085 - 2.7116 0.99 3650 136 0.2041 0.3015 REMARK 3 11 2.7116 - 2.6268 0.99 3681 138 0.2018 0.2763 REMARK 3 12 2.6268 - 2.5517 1.00 3706 139 0.2090 0.3076 REMARK 3 13 2.5517 - 2.4846 1.00 3638 139 0.2107 0.2721 REMARK 3 14 2.4846 - 2.4240 1.00 3697 134 0.2243 0.2930 REMARK 3 15 2.4240 - 2.3689 0.99 3678 139 0.2370 0.2816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6236 REMARK 3 ANGLE : 1.027 8431 REMARK 3 CHIRALITY : 0.057 957 REMARK 3 PLANARITY : 0.005 1082 REMARK 3 DIHEDRAL : 14.361 3724 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RFV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGL 20MG/ML, PEG MME 2000 35%, 50 ML REMARK 280 TRISHCL (PH=8.5), 0.2 MM PLP, PH 8.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.96450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.54500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.94675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.54500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.98225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.54500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.94675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.54500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.98225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.96450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -214.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 674 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 690 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 LYS B 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 685 O HOH A 687 2.10 REMARK 500 OE1 GLU A 130 O HOH A 601 2.14 REMARK 500 ND1 HIS B 176 O HOH B 601 2.16 REMARK 500 OE2 GLU B 68 O HOH B 602 2.17 REMARK 500 NH2 ARG B 365 OD2 ASP B 372 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 59.85 -105.18 REMARK 500 ILE A 57 -53.15 -137.92 REMARK 500 TYR A 58 135.40 -175.77 REMARK 500 LEU A 163 34.82 70.68 REMARK 500 THR A 192 162.42 69.57 REMARK 500 LYS A 212 -121.05 -87.62 REMARK 500 PHE A 238 -58.44 -130.93 REMARK 500 ASP A 242 -50.39 -121.09 REMARK 500 LYS A 320 98.05 -64.92 REMARK 500 SER A 341 175.53 86.97 REMARK 500 MET A 355 -97.88 -123.91 REMARK 500 ILE B 57 -52.45 -122.74 REMARK 500 THR B 192 156.40 70.10 REMARK 500 LYS B 212 -116.83 -93.77 REMARK 500 PHE B 238 -59.69 -135.04 REMARK 500 PRO B 311 1.76 -68.65 REMARK 500 SER B 341 179.18 77.12 REMARK 500 MET B 355 -72.85 -147.94 REMARK 500 SER B 358 -75.15 -148.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 356 HIS B 357 121.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 346 OE1 REMARK 620 2 HOH B 676 O 83.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 501 and LYS B REMARK 800 212 DBREF 5DX5 A 1 400 UNP J7TA22 J7TA22_CLOSG 1 400 DBREF 5DX5 B 1 400 UNP J7TA22 J7TA22_CLOSG 1 400 SEQRES 1 A 400 MET GLU ASN ILE LYS LYS MET GLY PHE ALA THR LYS ALA SEQRES 2 A 400 ILE HIS GLY GLY HIS ILE GLY ASP LYS GLN PHE GLY SER SEQRES 3 A 400 LEU ALA THR PRO ILE TYR GLN THR SER THR PHE ILE PHE SEQRES 4 A 400 ASP SER ALA GLU GLN GLY GLY ARG ARG PHE ALA GLY GLU SEQRES 5 A 400 GLU SER GLY TYR ILE TYR SER ARG LEU GLY ASN PRO THR SEQRES 6 A 400 SER THR GLU VAL GLU ASN LYS LEU ALA LEU LEU GLU GLY SEQRES 7 A 400 GLY GLU ALA ALA VAL VAL ALA ALA SER GLY MET GLY ALA SEQRES 8 A 400 ILE ALA ALA SER LEU TRP SER ALA LEU LYS SER GLY ASP SEQRES 9 A 400 HIS VAL VAL ALA SER ASP THR LEU TYR GLY CYS THR PHE SEQRES 10 A 400 ALA LEU LEU ASN HIS GLY LEU THR ARG TYR GLY VAL GLU SEQRES 11 A 400 VAL THR PHE VAL ASP VAL SER ASN LEU ASP GLU VAL LYS SEQRES 12 A 400 ASN ALA LEU LYS PRO ASN THR LYS VAL VAL TYR LEU GLU SEQRES 13 A 400 THR PRO ALA ASN PRO THR LEU LYS VAL THR ASP ILE ARG SEQRES 14 A 400 LYS ILE SER ASN MET VAL HIS GLU SER ASN LYS GLU CYS SEQRES 15 A 400 PHE VAL PHE VAL ASP ASN THR PHE CYS THR PRO TYR ILE SEQRES 16 A 400 GLN ARG PRO LEU GLU LEU GLY ALA ASP VAL VAL VAL HIS SEQRES 17 A 400 SER ALA THR LYS TYR LEU ASN GLY HIS GLY ASP VAL ILE SEQRES 18 A 400 ALA GLY PHE ALA VAL GLY LYS GLU GLU PHE ILE ASN GLN SEQRES 19 A 400 VAL LYS LEU PHE GLY ILE LYS ASP MET THR GLY SER VAL SEQRES 20 A 400 THR GLY PRO PHE GLU SER PHE LEU ILE ILE ARG GLY MET SEQRES 21 A 400 LYS THR LEU GLN LEU ARG MET GLU LYS HIS CYS LYS ASN SEQRES 22 A 400 ALA MET GLU VAL ALA LYS PHE LEU GLU SER HIS PRO ALA SEQRES 23 A 400 VAL GLU LYS VAL TYR TYR PRO GLY LEU GLU SER PHE LYS SEQRES 24 A 400 TYR TYR GLN LEU ALA ARG GLU GLN MET LYS LEU PRO GLY SEQRES 25 A 400 ALA MET ILE SER PHE GLU LEU LYS GLY GLY VAL GLU GLU SEQRES 26 A 400 GLY LYS ILE VAL MET ASN ASN VAL LYS LEU ALA THR LEU SEQRES 27 A 400 ALA VAL SER LEU GLY ASP SER GLU THR LEU ILE GLN HIS SEQRES 28 A 400 PRO ALA SER MET THR HIS SER PRO TYR THR ALA GLU GLU SEQRES 29 A 400 ARG LYS ALA ALA GLY ILE SER ASP GLY LEU VAL ARG LEU SEQRES 30 A 400 SER VAL GLY LEU GLU ASP ALA GLU ASP ILE ILE ASP ASP SEQRES 31 A 400 LEU LYS GLN ALA LEU ASP LEU ILE VAL LYS SEQRES 1 B 400 MET GLU ASN ILE LYS LYS MET GLY PHE ALA THR LYS ALA SEQRES 2 B 400 ILE HIS GLY GLY HIS ILE GLY ASP LYS GLN PHE GLY SER SEQRES 3 B 400 LEU ALA THR PRO ILE TYR GLN THR SER THR PHE ILE PHE SEQRES 4 B 400 ASP SER ALA GLU GLN GLY GLY ARG ARG PHE ALA GLY GLU SEQRES 5 B 400 GLU SER GLY TYR ILE TYR SER ARG LEU GLY ASN PRO THR SEQRES 6 B 400 SER THR GLU VAL GLU ASN LYS LEU ALA LEU LEU GLU GLY SEQRES 7 B 400 GLY GLU ALA ALA VAL VAL ALA ALA SER GLY MET GLY ALA SEQRES 8 B 400 ILE ALA ALA SER LEU TRP SER ALA LEU LYS SER GLY ASP SEQRES 9 B 400 HIS VAL VAL ALA SER ASP THR LEU TYR GLY CYS THR PHE SEQRES 10 B 400 ALA LEU LEU ASN HIS GLY LEU THR ARG TYR GLY VAL GLU SEQRES 11 B 400 VAL THR PHE VAL ASP VAL SER ASN LEU ASP GLU VAL LYS SEQRES 12 B 400 ASN ALA LEU LYS PRO ASN THR LYS VAL VAL TYR LEU GLU SEQRES 13 B 400 THR PRO ALA ASN PRO THR LEU LYS VAL THR ASP ILE ARG SEQRES 14 B 400 LYS ILE SER ASN MET VAL HIS GLU SER ASN LYS GLU CYS SEQRES 15 B 400 PHE VAL PHE VAL ASP ASN THR PHE CYS THR PRO TYR ILE SEQRES 16 B 400 GLN ARG PRO LEU GLU LEU GLY ALA ASP VAL VAL VAL HIS SEQRES 17 B 400 SER ALA THR LYS TYR LEU ASN GLY HIS GLY ASP VAL ILE SEQRES 18 B 400 ALA GLY PHE ALA VAL GLY LYS GLU GLU PHE ILE ASN GLN SEQRES 19 B 400 VAL LYS LEU PHE GLY ILE LYS ASP MET THR GLY SER VAL SEQRES 20 B 400 THR GLY PRO PHE GLU SER PHE LEU ILE ILE ARG GLY MET SEQRES 21 B 400 LYS THR LEU GLN LEU ARG MET GLU LYS HIS CYS LYS ASN SEQRES 22 B 400 ALA MET GLU VAL ALA LYS PHE LEU GLU SER HIS PRO ALA SEQRES 23 B 400 VAL GLU LYS VAL TYR TYR PRO GLY LEU GLU SER PHE LYS SEQRES 24 B 400 TYR TYR GLN LEU ALA ARG GLU GLN MET LYS LEU PRO GLY SEQRES 25 B 400 ALA MET ILE SER PHE GLU LEU LYS GLY GLY VAL GLU GLU SEQRES 26 B 400 GLY LYS ILE VAL MET ASN ASN VAL LYS LEU ALA THR LEU SEQRES 27 B 400 ALA VAL SER LEU GLY ASP SER GLU THR LEU ILE GLN HIS SEQRES 28 B 400 PRO ALA SER MET THR HIS SER PRO TYR THR ALA GLU GLU SEQRES 29 B 400 ARG LYS ALA ALA GLY ILE SER ASP GLY LEU VAL ARG LEU SEQRES 30 B 400 SER VAL GLY LEU GLU ASP ALA GLU ASP ILE ILE ASP ASP SEQRES 31 B 400 LEU LYS GLN ALA LEU ASP LEU ILE VAL LYS HET PLP A 501 15 HET CL A 502 1 HET PLP B 501 15 HET CL B 502 1 HET NA B 503 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 CL 2(CL 1-) FORMUL 7 NA NA 1+ FORMUL 8 HOH *194(H2 O) HELIX 1 AA1 ASN A 3 MET A 7 5 5 HELIX 2 AA2 GLY A 8 GLY A 16 1 9 HELIX 3 AA3 SER A 41 ALA A 50 1 10 HELIX 4 AA4 ASN A 63 GLY A 78 1 16 HELIX 5 AA5 SER A 87 LEU A 100 1 14 HELIX 6 AA6 TYR A 113 HIS A 122 1 10 HELIX 7 AA7 LEU A 124 GLY A 128 5 5 HELIX 8 AA8 ASN A 138 LEU A 146 1 9 HELIX 9 AA9 ASP A 167 ASN A 179 1 13 HELIX 10 AB1 ARG A 197 GLY A 202 5 6 HELIX 11 AB2 LYS A 228 PHE A 238 1 11 HELIX 12 AB3 GLY A 249 LYS A 261 1 13 HELIX 13 AB4 THR A 262 SER A 283 1 22 HELIX 14 AB5 TYR A 300 MET A 308 1 9 HELIX 15 AB6 GLY A 322 ASN A 331 1 10 HELIX 16 AB7 HIS A 351 MET A 355 5 5 HELIX 17 AB8 THR A 361 ALA A 368 1 8 HELIX 18 AB9 ASP A 383 LEU A 397 1 15 HELIX 19 AC1 ASN B 3 MET B 7 5 5 HELIX 20 AC2 GLY B 8 GLY B 16 1 9 HELIX 21 AC3 SER B 41 ALA B 50 1 10 HELIX 22 AC4 ASN B 63 GLY B 78 1 16 HELIX 23 AC5 SER B 87 LEU B 100 1 14 HELIX 24 AC6 TYR B 113 GLY B 123 1 11 HELIX 25 AC7 LEU B 124 GLY B 128 5 5 HELIX 26 AC8 ASN B 138 LEU B 146 1 9 HELIX 27 AC9 ASP B 167 ASN B 179 1 13 HELIX 28 AD1 ARG B 197 GLY B 202 5 6 HELIX 29 AD2 LYS B 228 PHE B 238 1 11 HELIX 30 AD3 GLY B 249 LYS B 261 1 13 HELIX 31 AD4 THR B 262 SER B 283 1 22 HELIX 32 AD5 TYR B 300 MET B 308 1 9 HELIX 33 AD6 GLY B 322 ASN B 331 1 10 HELIX 34 AD7 HIS B 351 MET B 355 5 5 HELIX 35 AD8 THR B 361 GLY B 369 1 9 HELIX 36 AD9 ASP B 383 LEU B 397 1 15 SHEET 1 AA1 7 ALA A 81 ALA A 85 0 SHEET 2 AA1 7 GLY A 223 GLY A 227 -1 O GLY A 223 N ALA A 85 SHEET 3 AA1 7 VAL A 205 SER A 209 -1 N VAL A 206 O VAL A 226 SHEET 4 AA1 7 PHE A 183 ASP A 187 1 N VAL A 186 O VAL A 205 SHEET 5 AA1 7 THR A 150 GLU A 156 1 N VAL A 153 O PHE A 185 SHEET 6 AA1 7 HIS A 105 SER A 109 1 N HIS A 105 O LYS A 151 SHEET 7 AA1 7 GLU A 130 VAL A 134 1 O GLU A 130 N VAL A 106 SHEET 1 AA2 5 VAL A 287 TYR A 291 0 SHEET 2 AA2 5 MET A 314 LEU A 319 -1 O SER A 316 N TYR A 291 SHEET 3 AA2 5 LEU A 374 SER A 378 -1 O LEU A 377 N ILE A 315 SHEET 4 AA2 5 LEU A 348 GLN A 350 -1 N LEU A 348 O SER A 378 SHEET 5 AA2 5 THR A 337 LEU A 338 1 N THR A 337 O ILE A 349 SHEET 1 AA3 7 ALA B 81 ALA B 85 0 SHEET 2 AA3 7 GLY B 223 GLY B 227 -1 O GLY B 223 N ALA B 85 SHEET 3 AA3 7 VAL B 205 SER B 209 -1 N VAL B 206 O VAL B 226 SHEET 4 AA3 7 PHE B 183 ASP B 187 1 N VAL B 186 O VAL B 205 SHEET 5 AA3 7 THR B 150 GLU B 156 1 N LYS B 151 O PHE B 183 SHEET 6 AA3 7 HIS B 105 SER B 109 1 N HIS B 105 O LYS B 151 SHEET 7 AA3 7 GLU B 130 VAL B 134 1 O VAL B 134 N ALA B 108 SHEET 1 AA4 5 VAL B 287 TYR B 291 0 SHEET 2 AA4 5 MET B 314 LEU B 319 -1 O SER B 316 N TYR B 291 SHEET 3 AA4 5 LEU B 374 SER B 378 -1 O LEU B 377 N ILE B 315 SHEET 4 AA4 5 LEU B 348 GLN B 350 -1 N LEU B 348 O SER B 378 SHEET 5 AA4 5 THR B 337 LEU B 338 1 N THR B 337 O ILE B 349 LINK NZ LYS A 212 C4A PLP A 501 1555 1555 1.45 LINK NZ LYS B 212 C4A PLP B 501 1555 1555 1.49 LINK OE1 GLU B 346 NA NA B 503 1555 1555 2.90 LINK NA NA B 503 O HOH B 676 1555 1555 2.37 CISPEP 1 THR A 157 PRO A 158 0 -8.65 CISPEP 2 ASN A 160 PRO A 161 0 -8.64 CISPEP 3 THR B 157 PRO B 158 0 -6.58 CISPEP 4 ASN B 160 PRO B 161 0 14.10 SITE 1 AC1 13 SER A 87 GLY A 88 MET A 89 TYR A 113 SITE 2 AC1 13 ASP A 187 PHE A 190 SER A 209 THR A 211 SITE 3 AC1 13 LYS A 212 ALA A 222 CL A 502 TYR B 58 SITE 4 AC1 13 ARG B 60 SITE 1 AC2 4 TYR A 113 PLP A 501 HOH A 679 HOH A 683 SITE 1 AC3 4 SER B 341 LEU B 342 PLP B 501 HOH B 685 SITE 1 AC4 7 GLY B 216 HIS B 217 GLY B 218 ASP B 344 SITE 2 AC4 7 SER B 345 GLU B 346 HOH B 676 SITE 1 AC5 20 TYR A 58 ARG A 60 SER B 87 GLY B 88 SITE 2 AC5 20 MET B 89 TYR B 113 ASN B 160 ASP B 187 SITE 3 AC5 20 THR B 189 SER B 209 ALA B 210 THR B 211 SITE 4 AC5 20 TYR B 213 LEU B 214 GLY B 216 SER B 341 SITE 5 AC5 20 LEU B 342 GLY B 343 CL B 502 HOH B 613 CRYST1 91.090 91.090 175.929 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005684 0.00000