HEADER TRANSCRIPTION 23-SEP-15 5DXM TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE CYCLOFENIL DERIVATIVE 3-[(E)-(1S,5S)-BICYCLO[3.3.1]NON-9- TITLE 3 YLIDENE(4-HYDROXYPHENYL)METHYL]PHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 3 30-OCT-24 5DXM 1 REMARK REVDAT 2 27-SEP-23 5DXM 1 REMARK REVDAT 1 04-MAY-16 5DXM 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 18293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5920 - 5.5605 0.95 1352 151 0.1688 0.2028 REMARK 3 2 5.5605 - 4.4146 0.99 1355 158 0.1651 0.1817 REMARK 3 3 4.4146 - 3.8569 0.92 1262 138 0.1533 0.1991 REMARK 3 4 3.8569 - 3.5044 0.98 1356 152 0.1900 0.2418 REMARK 3 5 3.5044 - 3.2533 0.98 1312 150 0.2089 0.2640 REMARK 3 6 3.2533 - 3.0615 0.97 1310 154 0.2243 0.2649 REMARK 3 7 3.0615 - 2.9082 0.96 1339 140 0.2287 0.2535 REMARK 3 8 2.9082 - 2.7816 0.88 1208 144 0.2419 0.2809 REMARK 3 9 2.7816 - 2.6746 0.89 1206 118 0.2548 0.3171 REMARK 3 10 2.6746 - 2.5823 0.90 1241 131 0.2361 0.2615 REMARK 3 11 2.5823 - 2.5015 0.89 1229 136 0.2428 0.2919 REMARK 3 12 2.5015 - 2.4300 0.88 1198 132 0.2439 0.2851 REMARK 3 13 2.4300 - 2.3661 0.81 1098 123 0.2484 0.2914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3929 REMARK 3 ANGLE : 0.532 5330 REMARK 3 CHIRALITY : 0.022 637 REMARK 3 PLANARITY : 0.003 660 REMARK 3 DIHEDRAL : 12.787 1423 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5055 18.0602 -5.2151 REMARK 3 T TENSOR REMARK 3 T11: 0.7347 T22: 0.8471 REMARK 3 T33: 0.5874 T12: 0.4745 REMARK 3 T13: -0.0026 T23: 0.1116 REMARK 3 L TENSOR REMARK 3 L11: 3.7726 L22: 7.1456 REMARK 3 L33: 2.6723 L12: -4.3767 REMARK 3 L13: -1.5115 L23: 1.2111 REMARK 3 S TENSOR REMARK 3 S11: 0.6159 S12: 0.6037 S13: 0.6112 REMARK 3 S21: -0.7886 S22: -0.7520 S23: 0.0516 REMARK 3 S31: -0.7634 S32: -1.4166 S33: -0.1462 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0233 -5.9702 -6.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.5217 T22: 0.5701 REMARK 3 T33: 0.4807 T12: 0.1489 REMARK 3 T13: 0.0154 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 1.4846 L22: 5.4990 REMARK 3 L33: 3.2367 L12: 0.9965 REMARK 3 L13: -0.6925 L23: -0.3766 REMARK 3 S TENSOR REMARK 3 S11: 0.3124 S12: 0.4282 S13: -0.3203 REMARK 3 S21: -0.5885 S22: -0.8345 S23: -0.6631 REMARK 3 S31: 0.4405 S32: 0.4571 S33: 0.4124 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6893 3.7744 1.0054 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.3157 REMARK 3 T33: 0.2587 T12: 0.0231 REMARK 3 T13: 0.0018 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.0047 L22: 4.2138 REMARK 3 L33: 6.4212 L12: -0.5458 REMARK 3 L13: -1.7060 L23: 0.7194 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.2359 S13: 0.1306 REMARK 3 S21: -0.0114 S22: -0.0388 S23: -0.1414 REMARK 3 S31: 0.0954 S32: -0.0975 S33: 0.0558 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9812 -15.3565 8.1406 REMARK 3 T TENSOR REMARK 3 T11: 1.4184 T22: 0.5883 REMARK 3 T33: 0.9636 T12: 0.2076 REMARK 3 T13: 0.1991 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.5809 L22: 1.2028 REMARK 3 L33: 6.0537 L12: 1.0458 REMARK 3 L13: -1.4110 L23: -2.1910 REMARK 3 S TENSOR REMARK 3 S11: 0.2842 S12: -0.3409 S13: -0.2360 REMARK 3 S21: -1.2755 S22: 0.2067 S23: -0.6453 REMARK 3 S31: 1.7866 S32: -0.0377 S33: 0.1622 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 421 THROUGH 438 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6522 -7.7385 7.2603 REMARK 3 T TENSOR REMARK 3 T11: 0.7163 T22: 0.3683 REMARK 3 T33: 0.5582 T12: -0.1152 REMARK 3 T13: 0.1748 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 7.2007 L22: 5.9385 REMARK 3 L33: 8.2895 L12: -4.1136 REMARK 3 L13: 0.8159 L23: -0.6164 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.2139 S13: -0.8230 REMARK 3 S21: 0.1779 S22: -0.3149 S23: 0.3035 REMARK 3 S31: 1.5621 S32: -0.8045 S33: -0.0488 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 439 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1332 11.8650 4.3912 REMARK 3 T TENSOR REMARK 3 T11: 0.4114 T22: 0.6805 REMARK 3 T33: 0.3819 T12: 0.1659 REMARK 3 T13: 0.0176 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 5.9559 L22: 2.0136 REMARK 3 L33: 2.4564 L12: -0.9588 REMARK 3 L13: -1.6978 L23: 0.0243 REMARK 3 S TENSOR REMARK 3 S11: 0.4479 S12: 0.6519 S13: 0.2824 REMARK 3 S21: -0.3638 S22: -0.4029 S23: 0.1254 REMARK 3 S31: -0.5279 S32: -1.0957 S33: 0.0553 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8194 2.7692 10.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.2851 REMARK 3 T33: 0.2415 T12: 0.0280 REMARK 3 T13: -0.0418 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 5.6028 L22: 2.3258 REMARK 3 L33: 4.0208 L12: -1.4088 REMARK 3 L13: -2.5505 L23: 0.8377 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.1230 S13: -0.1972 REMARK 3 S21: 0.1668 S22: -0.0807 S23: -0.1006 REMARK 3 S31: 0.3465 S32: 0.1424 S33: -0.0735 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3826 2.4817 35.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.4781 T22: 0.4030 REMARK 3 T33: 0.3946 T12: -0.0186 REMARK 3 T13: 0.1148 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 5.7399 L22: 1.8565 REMARK 3 L33: 6.5254 L12: -0.8167 REMARK 3 L13: -0.5194 L23: 0.7359 REMARK 3 S TENSOR REMARK 3 S11: -0.2991 S12: -0.2440 S13: -0.1812 REMARK 3 S21: 0.3347 S22: -0.0238 S23: 0.1499 REMARK 3 S31: 0.4924 S32: -0.4301 S33: 0.3052 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 372 THROUGH 438 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8863 10.4763 29.8923 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.3066 REMARK 3 T33: 0.2056 T12: -0.0189 REMARK 3 T13: -0.0058 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.7847 L22: 4.9233 REMARK 3 L33: 6.6134 L12: -0.6008 REMARK 3 L13: -1.8105 L23: 0.5566 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: -0.2219 S13: 0.1397 REMARK 3 S21: 0.3609 S22: 0.0165 S23: -0.3807 REMARK 3 S31: -0.2518 S32: 0.3051 S33: -0.0623 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 439 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0959 3.0138 19.1127 REMARK 3 T TENSOR REMARK 3 T11: 0.3705 T22: 0.6945 REMARK 3 T33: 0.3879 T12: -0.0784 REMARK 3 T13: 0.0578 T23: -0.0974 REMARK 3 L TENSOR REMARK 3 L11: 2.5105 L22: 4.7725 REMARK 3 L33: 5.5822 L12: 0.1278 REMARK 3 L13: 0.9603 L23: -2.2693 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: 0.0632 S13: -0.0668 REMARK 3 S21: -0.4885 S22: -0.1071 S23: 0.0066 REMARK 3 S31: 0.4425 S32: -1.2052 S33: 0.0839 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 497 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3104 3.7005 24.2886 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.3474 REMARK 3 T33: 0.3697 T12: 0.0269 REMARK 3 T13: 0.0401 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.2650 L22: 2.6162 REMARK 3 L33: 7.1953 L12: -0.7224 REMARK 3 L13: 0.1731 L23: -0.4252 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0567 S13: -0.3680 REMARK 3 S21: 0.0155 S22: -0.0560 S23: -0.1246 REMARK 3 S31: 0.3682 S32: 0.6304 S33: 0.0232 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1390 17.9183 0.5215 REMARK 3 T TENSOR REMARK 3 T11: 0.6390 T22: 0.8265 REMARK 3 T33: 0.9078 T12: -0.0563 REMARK 3 T13: 0.2438 T23: -0.1043 REMARK 3 L TENSOR REMARK 3 L11: 6.0888 L22: 4.9630 REMARK 3 L33: 0.6854 L12: -1.2334 REMARK 3 L13: -1.0608 L23: 0.6967 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: 0.9938 S13: -0.3788 REMARK 3 S21: 0.2786 S22: -0.7584 S23: -0.6702 REMARK 3 S31: -0.7318 S32: 0.4605 S33: -0.0359 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3016 -13.0542 36.6241 REMARK 3 T TENSOR REMARK 3 T11: 1.0955 T22: 0.5181 REMARK 3 T33: 1.0799 T12: -0.0675 REMARK 3 T13: 0.1789 T23: 0.2554 REMARK 3 L TENSOR REMARK 3 L11: 1.6671 L22: 0.5607 REMARK 3 L33: 5.7083 L12: 0.1957 REMARK 3 L13: 2.7217 L23: -0.5053 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: -0.8766 S13: -1.1587 REMARK 3 S21: -0.3028 S22: 0.6972 S23: 0.2692 REMARK 3 S31: 0.9648 S32: -0.7646 S33: -0.4421 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19078 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2B1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.01700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 ARG B 548 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 HIS C 687 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 HIS A 373 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 ASP A 473 CG OD1 OD2 REMARK 470 ARG A 477 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 ASN A 532 CG OD1 ND2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 LEU B 308 CG CD1 CD2 REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 HIS B 373 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 481 CG CD CE NZ REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ASN B 532 CG OD1 ND2 REMARK 470 LYS C 688 CG CD CE NZ REMARK 470 LYS D 688 CG CD CE NZ REMARK 470 HIS D 691 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 456 O HOH A 1001 1.89 REMARK 500 O HOH A 1008 O HOH A 1009 1.90 REMARK 500 O HOH B 1019 O HOH B 1032 1.99 REMARK 500 O HOH B 1031 O HOH B 1035 2.09 REMARK 500 O HOH B 1033 O HOH B 1034 2.10 REMARK 500 O HOH A 1025 O HOH A 1038 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1028 O HOH B 1014 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 335 143.93 -20.59 REMARK 500 SER A 338 -166.95 -111.91 REMARK 500 VAL A 533 -70.40 -69.10 REMARK 500 HIS A 547 44.41 -100.78 REMARK 500 GLU B 330 31.98 -92.10 REMARK 500 PRO B 336 -158.79 -67.75 REMARK 500 PHE B 337 -158.36 -76.47 REMARK 500 SER B 338 -134.35 169.64 REMARK 500 GLU B 339 -19.75 -165.44 REMARK 500 LEU B 403 82.87 -67.20 REMARK 500 LEU B 410 166.48 58.98 REMARK 500 VAL B 418 113.88 78.89 REMARK 500 VAL B 533 135.09 -174.25 REMARK 500 GLN D 695 54.28 -94.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 336 PHE B 337 -147.39 REMARK 500 PHE B 337 SER B 338 149.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5J0 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5J0 B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DXK RELATED DB: PDB REMARK 900 5DXK CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE DBREF 5DXM A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DXM B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DXM C 686 699 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 5DXM D 686 699 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 5DXM SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DXM SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5J0 A 900 24 HET 5J0 B 901 24 HETNAM 5J0 3-[(E)-(1S,5S)-BICYCLO[3.3.1]NON-9-YLIDENE(4- HETNAM 2 5J0 HYDROXYPHENYL)METHYL]PHENOL FORMUL 5 5J0 2(C22 H24 O2) FORMUL 7 HOH *77(H2 O) HELIX 1 AA1 THR A 311 ALA A 322 1 12 HELIX 2 AA2 SER A 338 ARG A 363 1 26 HELIX 3 AA3 THR A 371 SER A 395 1 25 HELIX 4 AA4 ARG A 412 VAL A 418 5 7 HELIX 5 AA5 MET A 421 MET A 438 1 18 HELIX 6 AA6 GLN A 441 SER A 456 1 16 HELIX 7 AA7 ASP A 473 ALA A 493 1 21 HELIX 8 AA8 THR A 496 ASN A 532 1 37 HELIX 9 AA9 SER A 537 ALA A 546 1 10 HELIX 10 AB1 THR B 311 ALA B 322 1 12 HELIX 11 AB2 GLU B 339 LYS B 362 1 24 HELIX 12 AB3 THR B 371 SER B 395 1 25 HELIX 13 AB4 ARG B 412 LYS B 416 5 5 HELIX 14 AB5 GLY B 420 ASN B 439 1 20 HELIX 15 AB6 GLN B 441 SER B 456 1 16 HELIX 16 AB7 GLU B 470 ALA B 493 1 24 HELIX 17 AB8 THR B 496 LYS B 531 1 36 HELIX 18 AB9 SER B 537 ALA B 546 1 10 HELIX 19 AC1 ILE C 689 ASP C 696 1 8 HELIX 20 AC2 ILE D 689 GLN D 695 1 7 SHEET 1 AA1 2 LEU A 402 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 LEU A 410 -1 O LEU A 408 N ALA A 405 LINK O CYS B 417 CG2 VAL B 418 1555 1555 1.22 CISPEP 1 ASP A 332 PRO A 333 0 0.90 CISPEP 2 ARG A 335 PRO A 336 0 9.05 CISPEP 3 VAL B 533 VAL B 534 0 0.44 SITE 1 AC1 7 LEU A 346 THR A 347 ALA A 350 GLU A 353 SITE 2 AC1 7 MET A 388 ARG A 394 MET A 421 SITE 1 AC2 10 MET B 343 LEU B 346 THR B 347 ALA B 350 SITE 2 AC2 10 GLU B 353 MET B 388 ARG B 394 MET B 421 SITE 3 AC2 10 ILE B 424 LEU B 525 CRYST1 54.506 82.034 58.843 90.00 111.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018347 0.000000 0.007065 0.00000 SCALE2 0.000000 0.012190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018211 0.00000