data_5DY7 # _entry.id 5DY7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DY7 pdb_00005dy7 10.2210/pdb5dy7/pdb WWPDB D_1000214016 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-25 2 'Structure model' 1 1 2016-06-22 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DY7 _pdbx_database_status.recvd_initial_deposition_date 2015-09-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5C7N unspecified PDB . 5C85 unspecified PDB . 5C87 unspecified PDB . 5C89 unspecified PDB . 5D7X unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhu, J.' 1 'Caflisch, A.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 5555 _citation.page_last 5561 _citation.title ;Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.6b00215 _citation.pdbx_database_id_PubMed 27167503 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, J.' 1 ? primary 'Caflisch, A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Peregrin 13703.698 1 ? ? ? ? 2 non-polymer syn '7-(trifluoromethyl)-3,4-dihydroquinoxalin-2(1H)-one' 216.160 1 ? ? ? ? 3 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 4 water nat water 18.015 142 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bromodomain and PHD finger-containing protein 1,Protein Br140' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNC LKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG ; _entity_poly.pdbx_seq_one_letter_code_can ;SMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNC LKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '7-(trifluoromethyl)-3,4-dihydroquinoxalin-2(1H)-one' 5GT 3 'NITRATE ION' NO3 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLU n 1 4 MET n 1 5 GLN n 1 6 LEU n 1 7 THR n 1 8 PRO n 1 9 PHE n 1 10 LEU n 1 11 ILE n 1 12 LEU n 1 13 LEU n 1 14 ARG n 1 15 LYS n 1 16 THR n 1 17 LEU n 1 18 GLU n 1 19 GLN n 1 20 LEU n 1 21 GLN n 1 22 GLU n 1 23 LYS n 1 24 ASP n 1 25 THR n 1 26 GLY n 1 27 ASN n 1 28 ILE n 1 29 PHE n 1 30 SER n 1 31 GLU n 1 32 PRO n 1 33 VAL n 1 34 PRO n 1 35 LEU n 1 36 SER n 1 37 GLU n 1 38 VAL n 1 39 PRO n 1 40 ASP n 1 41 TYR n 1 42 LEU n 1 43 ASP n 1 44 HIS n 1 45 ILE n 1 46 LYS n 1 47 LYS n 1 48 PRO n 1 49 MET n 1 50 ASP n 1 51 PHE n 1 52 PHE n 1 53 THR n 1 54 MET n 1 55 LYS n 1 56 GLN n 1 57 ASN n 1 58 LEU n 1 59 GLU n 1 60 ALA n 1 61 TYR n 1 62 ARG n 1 63 TYR n 1 64 LEU n 1 65 ASN n 1 66 PHE n 1 67 ASP n 1 68 ASP n 1 69 PHE n 1 70 GLU n 1 71 GLU n 1 72 ASP n 1 73 PHE n 1 74 ASN n 1 75 LEU n 1 76 ILE n 1 77 VAL n 1 78 SER n 1 79 ASN n 1 80 CYS n 1 81 LEU n 1 82 LYS n 1 83 TYR n 1 84 ASN n 1 85 ALA n 1 86 LYS n 1 87 ASP n 1 88 THR n 1 89 ILE n 1 90 PHE n 1 91 TYR n 1 92 ARG n 1 93 ALA n 1 94 ALA n 1 95 VAL n 1 96 ARG n 1 97 LEU n 1 98 ARG n 1 99 GLU n 1 100 GLN n 1 101 GLY n 1 102 GLY n 1 103 ALA n 1 104 VAL n 1 105 LEU n 1 106 ARG n 1 107 GLN n 1 108 ALA n 1 109 ARG n 1 110 ARG n 1 111 GLN n 1 112 ALA n 1 113 GLU n 1 114 LYS n 1 115 MET n 1 116 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 116 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRPF1, BR140' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GT non-polymer . '7-(trifluoromethyl)-3,4-dihydroquinoxalin-2(1H)-one' ? 'C9 H7 F3 N2 O' 216.160 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 625 ? ? ? A . n A 1 2 MET 2 626 ? ? ? A . n A 1 3 GLU 3 627 627 GLU GLU A . n A 1 4 MET 4 628 628 MET MET A . n A 1 5 GLN 5 629 629 GLN GLN A . n A 1 6 LEU 6 630 630 LEU LEU A . n A 1 7 THR 7 631 631 THR THR A . n A 1 8 PRO 8 632 632 PRO PRO A . n A 1 9 PHE 9 633 633 PHE PHE A . n A 1 10 LEU 10 634 634 LEU LEU A . n A 1 11 ILE 11 635 635 ILE ILE A . n A 1 12 LEU 12 636 636 LEU LEU A . n A 1 13 LEU 13 637 637 LEU LEU A . n A 1 14 ARG 14 638 638 ARG ARG A . n A 1 15 LYS 15 639 639 LYS LYS A . n A 1 16 THR 16 640 640 THR THR A . n A 1 17 LEU 17 641 641 LEU LEU A . n A 1 18 GLU 18 642 642 GLU GLU A . n A 1 19 GLN 19 643 643 GLN GLN A . n A 1 20 LEU 20 644 644 LEU LEU A . n A 1 21 GLN 21 645 645 GLN GLN A . n A 1 22 GLU 22 646 646 GLU GLU A . n A 1 23 LYS 23 647 647 LYS LYS A . n A 1 24 ASP 24 648 648 ASP ASP A . n A 1 25 THR 25 649 649 THR THR A . n A 1 26 GLY 26 650 650 GLY GLY A . n A 1 27 ASN 27 651 651 ASN ASN A . n A 1 28 ILE 28 652 652 ILE ILE A . n A 1 29 PHE 29 653 653 PHE PHE A . n A 1 30 SER 30 654 654 SER SER A . n A 1 31 GLU 31 655 655 GLU GLU A . n A 1 32 PRO 32 656 656 PRO PRO A . n A 1 33 VAL 33 657 657 VAL VAL A . n A 1 34 PRO 34 658 658 PRO PRO A . n A 1 35 LEU 35 659 659 LEU LEU A . n A 1 36 SER 36 660 660 SER SER A . n A 1 37 GLU 37 661 661 GLU GLU A . n A 1 38 VAL 38 662 662 VAL VAL A . n A 1 39 PRO 39 663 663 PRO PRO A . n A 1 40 ASP 40 664 664 ASP ASP A . n A 1 41 TYR 41 665 665 TYR TYR A . n A 1 42 LEU 42 666 666 LEU LEU A . n A 1 43 ASP 43 667 667 ASP ASP A . n A 1 44 HIS 44 668 668 HIS HIS A . n A 1 45 ILE 45 669 669 ILE ILE A . n A 1 46 LYS 46 670 670 LYS LYS A . n A 1 47 LYS 47 671 671 LYS LYS A . n A 1 48 PRO 48 672 672 PRO PRO A . n A 1 49 MET 49 673 673 MET MET A . n A 1 50 ASP 50 674 674 ASP ASP A . n A 1 51 PHE 51 675 675 PHE PHE A . n A 1 52 PHE 52 676 676 PHE PHE A . n A 1 53 THR 53 677 677 THR THR A . n A 1 54 MET 54 678 678 MET MET A . n A 1 55 LYS 55 679 679 LYS LYS A . n A 1 56 GLN 56 680 680 GLN GLN A . n A 1 57 ASN 57 681 681 ASN ASN A . n A 1 58 LEU 58 682 682 LEU LEU A . n A 1 59 GLU 59 683 683 GLU GLU A . n A 1 60 ALA 60 684 684 ALA ALA A . n A 1 61 TYR 61 685 685 TYR TYR A . n A 1 62 ARG 62 686 686 ARG ARG A . n A 1 63 TYR 63 687 687 TYR TYR A . n A 1 64 LEU 64 688 688 LEU LEU A . n A 1 65 ASN 65 689 689 ASN ASN A . n A 1 66 PHE 66 690 690 PHE PHE A . n A 1 67 ASP 67 691 691 ASP ASP A . n A 1 68 ASP 68 692 692 ASP ASP A . n A 1 69 PHE 69 693 693 PHE PHE A . n A 1 70 GLU 70 694 694 GLU GLU A . n A 1 71 GLU 71 695 695 GLU GLU A . n A 1 72 ASP 72 696 696 ASP ASP A . n A 1 73 PHE 73 697 697 PHE PHE A . n A 1 74 ASN 74 698 698 ASN ASN A . n A 1 75 LEU 75 699 699 LEU LEU A . n A 1 76 ILE 76 700 700 ILE ILE A . n A 1 77 VAL 77 701 701 VAL VAL A . n A 1 78 SER 78 702 702 SER SER A . n A 1 79 ASN 79 703 703 ASN ASN A . n A 1 80 CYS 80 704 704 CYS CYS A . n A 1 81 LEU 81 705 705 LEU LEU A . n A 1 82 LYS 82 706 706 LYS LYS A . n A 1 83 TYR 83 707 707 TYR TYR A . n A 1 84 ASN 84 708 708 ASN ASN A . n A 1 85 ALA 85 709 709 ALA ALA A . n A 1 86 LYS 86 710 710 LYS LYS A . n A 1 87 ASP 87 711 711 ASP ASP A . n A 1 88 THR 88 712 712 THR THR A . n A 1 89 ILE 89 713 713 ILE ILE A . n A 1 90 PHE 90 714 714 PHE PHE A . n A 1 91 TYR 91 715 715 TYR TYR A . n A 1 92 ARG 92 716 716 ARG ARG A . n A 1 93 ALA 93 717 717 ALA ALA A . n A 1 94 ALA 94 718 718 ALA ALA A . n A 1 95 VAL 95 719 719 VAL VAL A . n A 1 96 ARG 96 720 720 ARG ARG A . n A 1 97 LEU 97 721 721 LEU LEU A . n A 1 98 ARG 98 722 722 ARG ARG A . n A 1 99 GLU 99 723 723 GLU GLU A . n A 1 100 GLN 100 724 724 GLN GLN A . n A 1 101 GLY 101 725 725 GLY GLY A . n A 1 102 GLY 102 726 726 GLY GLY A . n A 1 103 ALA 103 727 727 ALA ALA A . n A 1 104 VAL 104 728 728 VAL VAL A . n A 1 105 LEU 105 729 729 LEU LEU A . n A 1 106 ARG 106 730 730 ARG ARG A . n A 1 107 GLN 107 731 731 GLN GLN A . n A 1 108 ALA 108 732 732 ALA ALA A . n A 1 109 ARG 109 733 733 ARG ARG A . n A 1 110 ARG 110 734 734 ARG ARG A . n A 1 111 GLN 111 735 735 GLN GLN A . n A 1 112 ALA 112 736 736 ALA ALA A . n A 1 113 GLU 113 737 737 GLU GLU A . n A 1 114 LYS 114 738 738 LYS LYS A . n A 1 115 MET 115 739 739 MET MET A . n A 1 116 GLY 116 740 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GT 1 801 1 5GT DRG A . C 3 NO3 1 802 1 NO3 NO3 A . D 4 HOH 1 901 29 HOH HOH A . D 4 HOH 2 902 92 HOH HOH A . D 4 HOH 3 903 80 HOH HOH A . D 4 HOH 4 904 143 HOH HOH A . D 4 HOH 5 905 87 HOH HOH A . D 4 HOH 6 906 61 HOH HOH A . D 4 HOH 7 907 146 HOH HOH A . D 4 HOH 8 908 34 HOH HOH A . D 4 HOH 9 909 117 HOH HOH A . D 4 HOH 10 910 53 HOH HOH A . D 4 HOH 11 911 48 HOH HOH A . D 4 HOH 12 912 91 HOH HOH A . D 4 HOH 13 913 31 HOH HOH A . D 4 HOH 14 914 18 HOH HOH A . D 4 HOH 15 915 84 HOH HOH A . D 4 HOH 16 916 119 HOH HOH A . D 4 HOH 17 917 3 HOH HOH A . D 4 HOH 18 918 41 HOH HOH A . D 4 HOH 19 919 51 HOH HOH A . D 4 HOH 20 920 97 HOH HOH A . D 4 HOH 21 921 11 HOH HOH A . D 4 HOH 22 922 88 HOH HOH A . D 4 HOH 23 923 94 HOH HOH A . D 4 HOH 24 924 1 HOH HOH A . D 4 HOH 25 925 5 HOH HOH A . D 4 HOH 26 926 2 HOH HOH A . D 4 HOH 27 927 153 HOH HOH A . D 4 HOH 28 928 110 HOH HOH A . D 4 HOH 29 929 50 HOH HOH A . D 4 HOH 30 930 60 HOH HOH A . D 4 HOH 31 931 108 HOH HOH A . D 4 HOH 32 932 105 HOH HOH A . D 4 HOH 33 933 107 HOH HOH A . D 4 HOH 34 934 21 HOH HOH A . D 4 HOH 35 935 112 HOH HOH A . D 4 HOH 36 936 59 HOH HOH A . D 4 HOH 37 937 72 HOH HOH A . D 4 HOH 38 938 123 HOH HOH A . D 4 HOH 39 939 96 HOH HOH A . D 4 HOH 40 940 71 HOH HOH A . D 4 HOH 41 941 134 HOH HOH A . D 4 HOH 42 942 8 HOH HOH A . D 4 HOH 43 943 43 HOH HOH A . D 4 HOH 44 944 55 HOH HOH A . D 4 HOH 45 945 47 HOH HOH A . D 4 HOH 46 946 14 HOH HOH A . D 4 HOH 47 947 101 HOH HOH A . D 4 HOH 48 948 33 HOH HOH A . D 4 HOH 49 949 67 HOH HOH A . D 4 HOH 50 950 16 HOH HOH A . D 4 HOH 51 951 160 HOH HOH A . D 4 HOH 52 952 52 HOH HOH A . D 4 HOH 53 953 42 HOH HOH A . D 4 HOH 54 954 25 HOH HOH A . D 4 HOH 55 955 9 HOH HOH A . D 4 HOH 56 956 44 HOH HOH A . D 4 HOH 57 957 75 HOH HOH A . D 4 HOH 58 958 49 HOH HOH A . D 4 HOH 59 959 15 HOH HOH A . D 4 HOH 60 960 45 HOH HOH A . D 4 HOH 61 961 36 HOH HOH A . D 4 HOH 62 962 82 HOH HOH A . D 4 HOH 63 963 19 HOH HOH A . D 4 HOH 64 964 24 HOH HOH A . D 4 HOH 65 965 118 HOH HOH A . D 4 HOH 66 966 7 HOH HOH A . D 4 HOH 67 967 125 HOH HOH A . D 4 HOH 68 968 89 HOH HOH A . D 4 HOH 69 969 12 HOH HOH A . D 4 HOH 70 970 115 HOH HOH A . D 4 HOH 71 971 4 HOH HOH A . D 4 HOH 72 972 23 HOH HOH A . D 4 HOH 73 973 54 HOH HOH A . D 4 HOH 74 974 30 HOH HOH A . D 4 HOH 75 975 22 HOH HOH A . D 4 HOH 76 976 56 HOH HOH A . D 4 HOH 77 977 17 HOH HOH A . D 4 HOH 78 978 113 HOH HOH A . D 4 HOH 79 979 86 HOH HOH A . D 4 HOH 80 980 77 HOH HOH A . D 4 HOH 81 981 6 HOH HOH A . D 4 HOH 82 982 46 HOH HOH A . D 4 HOH 83 983 10 HOH HOH A . D 4 HOH 84 984 37 HOH HOH A . D 4 HOH 85 985 39 HOH HOH A . D 4 HOH 86 986 102 HOH HOH A . D 4 HOH 87 987 74 HOH HOH A . D 4 HOH 88 988 140 HOH HOH A . D 4 HOH 89 989 132 HOH HOH A . D 4 HOH 90 990 32 HOH HOH A . D 4 HOH 91 991 129 HOH HOH A . D 4 HOH 92 992 154 HOH HOH A . D 4 HOH 93 993 20 HOH HOH A . D 4 HOH 94 994 57 HOH HOH A . D 4 HOH 95 995 128 HOH HOH A . D 4 HOH 96 996 142 HOH HOH A . D 4 HOH 97 997 95 HOH HOH A . D 4 HOH 98 998 148 HOH HOH A . D 4 HOH 99 999 114 HOH HOH A . D 4 HOH 100 1000 104 HOH HOH A . D 4 HOH 101 1001 100 HOH HOH A . D 4 HOH 102 1002 135 HOH HOH A . D 4 HOH 103 1003 64 HOH HOH A . D 4 HOH 104 1004 68 HOH HOH A . D 4 HOH 105 1005 90 HOH HOH A . D 4 HOH 106 1006 138 HOH HOH A . D 4 HOH 107 1007 66 HOH HOH A . D 4 HOH 108 1008 126 HOH HOH A . D 4 HOH 109 1009 28 HOH HOH A . D 4 HOH 110 1010 116 HOH HOH A . D 4 HOH 111 1011 157 HOH HOH A . D 4 HOH 112 1012 124 HOH HOH A . D 4 HOH 113 1013 131 HOH HOH A . D 4 HOH 114 1014 85 HOH HOH A . D 4 HOH 115 1015 38 HOH HOH A . D 4 HOH 116 1016 137 HOH HOH A . D 4 HOH 117 1017 145 HOH HOH A . D 4 HOH 118 1018 27 HOH HOH A . D 4 HOH 119 1019 120 HOH HOH A . D 4 HOH 120 1020 13 HOH HOH A . D 4 HOH 121 1021 78 HOH HOH A . D 4 HOH 122 1022 63 HOH HOH A . D 4 HOH 123 1023 130 HOH HOH A . D 4 HOH 124 1024 26 HOH HOH A . D 4 HOH 125 1025 70 HOH HOH A . D 4 HOH 126 1026 73 HOH HOH A . D 4 HOH 127 1027 76 HOH HOH A . D 4 HOH 128 1028 147 HOH HOH A . D 4 HOH 129 1029 93 HOH HOH A . D 4 HOH 130 1030 152 HOH HOH A . D 4 HOH 131 1031 83 HOH HOH A . D 4 HOH 132 1032 58 HOH HOH A . D 4 HOH 133 1033 69 HOH HOH A . D 4 HOH 134 1034 35 HOH HOH A . D 4 HOH 135 1035 62 HOH HOH A . D 4 HOH 136 1036 103 HOH HOH A . D 4 HOH 137 1037 40 HOH HOH A . D 4 HOH 138 1038 111 HOH HOH A . D 4 HOH 139 1039 79 HOH HOH A . D 4 HOH 140 1040 98 HOH HOH A . D 4 HOH 141 1041 65 HOH HOH A . D 4 HOH 142 1042 106 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 627 ? CG ? A GLU 3 CG 2 1 Y 1 A GLU 627 ? CD ? A GLU 3 CD 3 1 Y 1 A GLU 627 ? OE1 ? A GLU 3 OE1 4 1 Y 1 A GLU 627 ? OE2 ? A GLU 3 OE2 5 1 Y 1 A LYS 670 ? CD ? A LYS 46 CD 6 1 Y 1 A LYS 670 ? CE ? A LYS 46 CE 7 1 Y 1 A LYS 670 ? NZ ? A LYS 46 NZ 8 1 Y 1 A GLN 731 ? CD ? A GLN 107 CD 9 1 Y 1 A GLN 731 ? OE1 ? A GLN 107 OE1 10 1 Y 1 A GLN 731 ? NE2 ? A GLN 107 NE2 11 1 Y 1 A LYS 738 ? CE ? A LYS 114 CE 12 1 Y 1 A LYS 738 ? NZ ? A LYS 114 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5DY7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 60.667 _cell.length_a_esd ? _cell.length_b 60.667 _cell.length_b_esd ? _cell.length_c 62.382 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DY7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Sodium Acetate, pH5.5, 0.15 M Sodium Nitrate, 20% PEG3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-07-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DY7 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.69 _reflns.d_resolution_low 40.19 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15153 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.5 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.69 _reflns_shell.d_res_low 1.78 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 95.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.440 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DY7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.690 _refine.ls_d_res_low 40.186 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15131 _refine.ls_number_reflns_R_free 761 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.06 _refine.ls_percent_reflns_R_free 5.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1810 _refine.ls_R_factor_R_free 0.2042 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1797 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4LC2 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.72 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.24 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 931 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 1092 _refine_hist.d_res_high 1.690 _refine_hist.d_res_low 40.186 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1010 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.773 ? 1369 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.816 ? 635 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.045 ? 145 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 182 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6898 1.8202 . . 152 2725 96.00 . . . 0.3064 . 0.2437 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8202 2.0034 . . 147 2854 100.00 . . . 0.2161 . 0.2095 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0034 2.2933 . . 132 2893 100.00 . . . 0.2307 . 0.1850 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2933 2.8892 . . 173 2885 100.00 . . . 0.2477 . 0.1951 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8892 40.1969 . . 157 3013 100.00 . . . 0.1690 . 0.1617 . . . . . . . . . . # _struct.entry_id 5DY7 _struct.title 'Crystal structure of the human BRPF1 bromodomain in complex with SEED4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DY7 _struct_keywords.text ;Bromodomain and PHD finger-containing protein 1(BRPF1), monocytic leukemia zinc-finger (MOZ), Inhibitor, transcription, DNA binding protein ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRPF1_HUMAN _struct_ref.pdbx_db_accession P55201 _struct_ref.pdbx_db_isoform P55201-3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCL KYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG ; _struct_ref.pdbx_align_begin 626 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DY7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P55201 _struct_ref_seq.db_align_beg 626 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 740 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 626 _struct_ref_seq.pdbx_auth_seq_align_end 740 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5DY7 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P55201 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 625 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 150 ? 1 MORE 1 ? 1 'SSA (A^2)' 7040 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 5 ? ASP A 24 ? GLN A 629 ASP A 648 1 ? 20 HELX_P HELX_P2 AA2 ASP A 40 ? HIS A 44 ? ASP A 664 HIS A 668 5 ? 5 HELX_P HELX_P3 AA3 ASP A 50 ? ALA A 60 ? ASP A 674 ALA A 684 1 ? 11 HELX_P HELX_P4 AA4 ASN A 65 ? ASN A 84 ? ASN A 689 ASN A 708 1 ? 20 HELX_P HELX_P5 AA5 THR A 88 ? MET A 115 ? THR A 712 MET A 739 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5GT 801 ? 9 'binding site for residue 5GT A 801' AC2 Software A NO3 802 ? 8 'binding site for residue NO3 A 802' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ILE A 28 ? ILE A 652 . ? 1_555 ? 2 AC1 9 VAL A 33 ? VAL A 657 . ? 1_555 ? 3 AC1 9 PRO A 34 ? PRO A 658 . ? 1_555 ? 4 AC1 9 GLU A 37 ? GLU A 661 . ? 1_555 ? 5 AC1 9 VAL A 38 ? VAL A 662 . ? 1_555 ? 6 AC1 9 ASN A 84 ? ASN A 708 . ? 1_555 ? 7 AC1 9 PHE A 90 ? PHE A 714 . ? 1_555 ? 8 AC1 9 HOH D . ? HOH A 917 . ? 1_555 ? 9 AC1 9 HOH D . ? HOH A 929 . ? 1_555 ? 10 AC2 8 SER A 78 ? SER A 702 . ? 5_554 ? 11 AC2 8 LEU A 81 ? LEU A 705 . ? 5_554 ? 12 AC2 8 LYS A 82 ? LYS A 706 . ? 5_554 ? 13 AC2 8 TYR A 91 ? TYR A 715 . ? 1_555 ? 14 AC2 8 VAL A 95 ? VAL A 719 . ? 1_555 ? 15 AC2 8 ARG A 98 ? ARG A 722 . ? 1_555 ? 16 AC2 8 HOH D . ? HOH A 915 . ? 1_555 ? 17 AC2 8 HOH D . ? HOH A 987 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 651 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 901 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 720 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 A _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 913 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_664 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 923 ? D HOH . 2 1 A HOH 981 ? D HOH . 3 1 A HOH 1024 ? D HOH . # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 27.0249 _pdbx_refine_tls.origin_y 1.7388 _pdbx_refine_tls.origin_z -9.9100 _pdbx_refine_tls.T[1][1] 0.3513 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0855 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0162 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.1655 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0089 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.1849 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 5.6236 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.0637 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 1.3749 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.6565 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.1833 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.6753 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.2329 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.4660 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.1387 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.3195 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.1427 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0458 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.0844 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.1006 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0684 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 1038 ? 6.53 . 2 1 O ? A HOH 1039 ? 6.62 . 3 1 O ? A HOH 1040 ? 6.72 . 4 1 O ? A HOH 1041 ? 7.75 . 5 1 O ? A HOH 1042 ? 8.27 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 625 ? A SER 1 2 1 Y 1 A MET 626 ? A MET 2 3 1 Y 1 A GLY 740 ? A GLY 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GT FAB F N N 1 5GT CAO C N N 2 5GT FAC F N N 3 5GT FAD F N N 4 5GT CAL C Y N 5 5GT CAG C Y N 6 5GT CAN C Y N 7 5GT NAJ N N N 8 5GT C C N N 9 5GT O O N N 10 5GT CA C N N 11 5GT N N N N 12 5GT CAM C Y N 13 5GT CAF C Y N 14 5GT CAE C Y N 15 5GT H1 H N N 16 5GT H2 H N N 17 5GT H3 H N N 18 5GT H4 H N N 19 5GT H5 H N N 20 5GT H6 H N N 21 5GT H7 H N N 22 ALA N N N N 23 ALA CA C N S 24 ALA C C N N 25 ALA O O N N 26 ALA CB C N N 27 ALA OXT O N N 28 ALA H H N N 29 ALA H2 H N N 30 ALA HA H N N 31 ALA HB1 H N N 32 ALA HB2 H N N 33 ALA HB3 H N N 34 ALA HXT H N N 35 ARG N N N N 36 ARG CA C N S 37 ARG C C N N 38 ARG O O N N 39 ARG CB C N N 40 ARG CG C N N 41 ARG CD C N N 42 ARG NE N N N 43 ARG CZ C N N 44 ARG NH1 N N N 45 ARG NH2 N N N 46 ARG OXT O N N 47 ARG H H N N 48 ARG H2 H N N 49 ARG HA H N N 50 ARG HB2 H N N 51 ARG HB3 H N N 52 ARG HG2 H N N 53 ARG HG3 H N N 54 ARG HD2 H N N 55 ARG HD3 H N N 56 ARG HE H N N 57 ARG HH11 H N N 58 ARG HH12 H N N 59 ARG HH21 H N N 60 ARG HH22 H N N 61 ARG HXT H N N 62 ASN N N N N 63 ASN CA C N S 64 ASN C C N N 65 ASN O O N N 66 ASN CB C N N 67 ASN CG C N N 68 ASN OD1 O N N 69 ASN ND2 N N N 70 ASN OXT O N N 71 ASN H H N N 72 ASN H2 H N N 73 ASN HA H N N 74 ASN HB2 H N N 75 ASN HB3 H N N 76 ASN HD21 H N N 77 ASN HD22 H N N 78 ASN HXT H N N 79 ASP N N N N 80 ASP CA C N S 81 ASP C C N N 82 ASP O O N N 83 ASP CB C N N 84 ASP CG C N N 85 ASP OD1 O N N 86 ASP OD2 O N N 87 ASP OXT O N N 88 ASP H H N N 89 ASP H2 H N N 90 ASP HA H N N 91 ASP HB2 H N N 92 ASP HB3 H N N 93 ASP HD2 H N N 94 ASP HXT H N N 95 CYS N N N N 96 CYS CA C N R 97 CYS C C N N 98 CYS O O N N 99 CYS CB C N N 100 CYS SG S N N 101 CYS OXT O N N 102 CYS H H N N 103 CYS H2 H N N 104 CYS HA H N N 105 CYS HB2 H N N 106 CYS HB3 H N N 107 CYS HG H N N 108 CYS HXT H N N 109 GLN N N N N 110 GLN CA C N S 111 GLN C C N N 112 GLN O O N N 113 GLN CB C N N 114 GLN CG C N N 115 GLN CD C N N 116 GLN OE1 O N N 117 GLN NE2 N N N 118 GLN OXT O N N 119 GLN H H N N 120 GLN H2 H N N 121 GLN HA H N N 122 GLN HB2 H N N 123 GLN HB3 H N N 124 GLN HG2 H N N 125 GLN HG3 H N N 126 GLN HE21 H N N 127 GLN HE22 H N N 128 GLN HXT H N N 129 GLU N N N N 130 GLU CA C N S 131 GLU C C N N 132 GLU O O N N 133 GLU CB C N N 134 GLU CG C N N 135 GLU CD C N N 136 GLU OE1 O N N 137 GLU OE2 O N N 138 GLU OXT O N N 139 GLU H H N N 140 GLU H2 H N N 141 GLU HA H N N 142 GLU HB2 H N N 143 GLU HB3 H N N 144 GLU HG2 H N N 145 GLU HG3 H N N 146 GLU HE2 H N N 147 GLU HXT H N N 148 GLY N N N N 149 GLY CA C N N 150 GLY C C N N 151 GLY O O N N 152 GLY OXT O N N 153 GLY H H N N 154 GLY H2 H N N 155 GLY HA2 H N N 156 GLY HA3 H N N 157 GLY HXT H N N 158 HIS N N N N 159 HIS CA C N S 160 HIS C C N N 161 HIS O O N N 162 HIS CB C N N 163 HIS CG C Y N 164 HIS ND1 N Y N 165 HIS CD2 C Y N 166 HIS CE1 C Y N 167 HIS NE2 N Y N 168 HIS OXT O N N 169 HIS H H N N 170 HIS H2 H N N 171 HIS HA H N N 172 HIS HB2 H N N 173 HIS HB3 H N N 174 HIS HD1 H N N 175 HIS HD2 H N N 176 HIS HE1 H N N 177 HIS HE2 H N N 178 HIS HXT H N N 179 HOH O O N N 180 HOH H1 H N N 181 HOH H2 H N N 182 ILE N N N N 183 ILE CA C N S 184 ILE C C N N 185 ILE O O N N 186 ILE CB C N S 187 ILE CG1 C N N 188 ILE CG2 C N N 189 ILE CD1 C N N 190 ILE OXT O N N 191 ILE H H N N 192 ILE H2 H N N 193 ILE HA H N N 194 ILE HB H N N 195 ILE HG12 H N N 196 ILE HG13 H N N 197 ILE HG21 H N N 198 ILE HG22 H N N 199 ILE HG23 H N N 200 ILE HD11 H N N 201 ILE HD12 H N N 202 ILE HD13 H N N 203 ILE HXT H N N 204 LEU N N N N 205 LEU CA C N S 206 LEU C C N N 207 LEU O O N N 208 LEU CB C N N 209 LEU CG C N N 210 LEU CD1 C N N 211 LEU CD2 C N N 212 LEU OXT O N N 213 LEU H H N N 214 LEU H2 H N N 215 LEU HA H N N 216 LEU HB2 H N N 217 LEU HB3 H N N 218 LEU HG H N N 219 LEU HD11 H N N 220 LEU HD12 H N N 221 LEU HD13 H N N 222 LEU HD21 H N N 223 LEU HD22 H N N 224 LEU HD23 H N N 225 LEU HXT H N N 226 LYS N N N N 227 LYS CA C N S 228 LYS C C N N 229 LYS O O N N 230 LYS CB C N N 231 LYS CG C N N 232 LYS CD C N N 233 LYS CE C N N 234 LYS NZ N N N 235 LYS OXT O N N 236 LYS H H N N 237 LYS H2 H N N 238 LYS HA H N N 239 LYS HB2 H N N 240 LYS HB3 H N N 241 LYS HG2 H N N 242 LYS HG3 H N N 243 LYS HD2 H N N 244 LYS HD3 H N N 245 LYS HE2 H N N 246 LYS HE3 H N N 247 LYS HZ1 H N N 248 LYS HZ2 H N N 249 LYS HZ3 H N N 250 LYS HXT H N N 251 MET N N N N 252 MET CA C N S 253 MET C C N N 254 MET O O N N 255 MET CB C N N 256 MET CG C N N 257 MET SD S N N 258 MET CE C N N 259 MET OXT O N N 260 MET H H N N 261 MET H2 H N N 262 MET HA H N N 263 MET HB2 H N N 264 MET HB3 H N N 265 MET HG2 H N N 266 MET HG3 H N N 267 MET HE1 H N N 268 MET HE2 H N N 269 MET HE3 H N N 270 MET HXT H N N 271 NO3 N N N N 272 NO3 O1 O N N 273 NO3 O2 O N N 274 NO3 O3 O N N 275 PHE N N N N 276 PHE CA C N S 277 PHE C C N N 278 PHE O O N N 279 PHE CB C N N 280 PHE CG C Y N 281 PHE CD1 C Y N 282 PHE CD2 C Y N 283 PHE CE1 C Y N 284 PHE CE2 C Y N 285 PHE CZ C Y N 286 PHE OXT O N N 287 PHE H H N N 288 PHE H2 H N N 289 PHE HA H N N 290 PHE HB2 H N N 291 PHE HB3 H N N 292 PHE HD1 H N N 293 PHE HD2 H N N 294 PHE HE1 H N N 295 PHE HE2 H N N 296 PHE HZ H N N 297 PHE HXT H N N 298 PRO N N N N 299 PRO CA C N S 300 PRO C C N N 301 PRO O O N N 302 PRO CB C N N 303 PRO CG C N N 304 PRO CD C N N 305 PRO OXT O N N 306 PRO H H N N 307 PRO HA H N N 308 PRO HB2 H N N 309 PRO HB3 H N N 310 PRO HG2 H N N 311 PRO HG3 H N N 312 PRO HD2 H N N 313 PRO HD3 H N N 314 PRO HXT H N N 315 SER N N N N 316 SER CA C N S 317 SER C C N N 318 SER O O N N 319 SER CB C N N 320 SER OG O N N 321 SER OXT O N N 322 SER H H N N 323 SER H2 H N N 324 SER HA H N N 325 SER HB2 H N N 326 SER HB3 H N N 327 SER HG H N N 328 SER HXT H N N 329 THR N N N N 330 THR CA C N S 331 THR C C N N 332 THR O O N N 333 THR CB C N R 334 THR OG1 O N N 335 THR CG2 C N N 336 THR OXT O N N 337 THR H H N N 338 THR H2 H N N 339 THR HA H N N 340 THR HB H N N 341 THR HG1 H N N 342 THR HG21 H N N 343 THR HG22 H N N 344 THR HG23 H N N 345 THR HXT H N N 346 TYR N N N N 347 TYR CA C N S 348 TYR C C N N 349 TYR O O N N 350 TYR CB C N N 351 TYR CG C Y N 352 TYR CD1 C Y N 353 TYR CD2 C Y N 354 TYR CE1 C Y N 355 TYR CE2 C Y N 356 TYR CZ C Y N 357 TYR OH O N N 358 TYR OXT O N N 359 TYR H H N N 360 TYR H2 H N N 361 TYR HA H N N 362 TYR HB2 H N N 363 TYR HB3 H N N 364 TYR HD1 H N N 365 TYR HD2 H N N 366 TYR HE1 H N N 367 TYR HE2 H N N 368 TYR HH H N N 369 TYR HXT H N N 370 VAL N N N N 371 VAL CA C N S 372 VAL C C N N 373 VAL O O N N 374 VAL CB C N N 375 VAL CG1 C N N 376 VAL CG2 C N N 377 VAL OXT O N N 378 VAL H H N N 379 VAL H2 H N N 380 VAL HA H N N 381 VAL HB H N N 382 VAL HG11 H N N 383 VAL HG12 H N N 384 VAL HG13 H N N 385 VAL HG21 H N N 386 VAL HG22 H N N 387 VAL HG23 H N N 388 VAL HXT H N N 389 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GT O C doub N N 1 5GT C CA sing N N 2 5GT C NAJ sing N N 3 5GT CA N sing N N 4 5GT NAJ CAN sing N N 5 5GT N CAM sing N N 6 5GT CAN CAM doub Y N 7 5GT CAN CAG sing Y N 8 5GT CAM CAF sing Y N 9 5GT CAG CAL doub Y N 10 5GT CAF CAE doub Y N 11 5GT CAL CAE sing Y N 12 5GT CAL CAO sing N N 13 5GT FAC CAO sing N N 14 5GT FAD CAO sing N N 15 5GT CAO FAB sing N N 16 5GT CAG H1 sing N N 17 5GT NAJ H2 sing N N 18 5GT CA H3 sing N N 19 5GT CA H4 sing N N 20 5GT N H5 sing N N 21 5GT CAF H6 sing N N 22 5GT CAE H7 sing N N 23 ALA N CA sing N N 24 ALA N H sing N N 25 ALA N H2 sing N N 26 ALA CA C sing N N 27 ALA CA CB sing N N 28 ALA CA HA sing N N 29 ALA C O doub N N 30 ALA C OXT sing N N 31 ALA CB HB1 sing N N 32 ALA CB HB2 sing N N 33 ALA CB HB3 sing N N 34 ALA OXT HXT sing N N 35 ARG N CA sing N N 36 ARG N H sing N N 37 ARG N H2 sing N N 38 ARG CA C sing N N 39 ARG CA CB sing N N 40 ARG CA HA sing N N 41 ARG C O doub N N 42 ARG C OXT sing N N 43 ARG CB CG sing N N 44 ARG CB HB2 sing N N 45 ARG CB HB3 sing N N 46 ARG CG CD sing N N 47 ARG CG HG2 sing N N 48 ARG CG HG3 sing N N 49 ARG CD NE sing N N 50 ARG CD HD2 sing N N 51 ARG CD HD3 sing N N 52 ARG NE CZ sing N N 53 ARG NE HE sing N N 54 ARG CZ NH1 sing N N 55 ARG CZ NH2 doub N N 56 ARG NH1 HH11 sing N N 57 ARG NH1 HH12 sing N N 58 ARG NH2 HH21 sing N N 59 ARG NH2 HH22 sing N N 60 ARG OXT HXT sing N N 61 ASN N CA sing N N 62 ASN N H sing N N 63 ASN N H2 sing N N 64 ASN CA C sing N N 65 ASN CA CB sing N N 66 ASN CA HA sing N N 67 ASN C O doub N N 68 ASN C OXT sing N N 69 ASN CB CG sing N N 70 ASN CB HB2 sing N N 71 ASN CB HB3 sing N N 72 ASN CG OD1 doub N N 73 ASN CG ND2 sing N N 74 ASN ND2 HD21 sing N N 75 ASN ND2 HD22 sing N N 76 ASN OXT HXT sing N N 77 ASP N CA sing N N 78 ASP N H sing N N 79 ASP N H2 sing N N 80 ASP CA C sing N N 81 ASP CA CB sing N N 82 ASP CA HA sing N N 83 ASP C O doub N N 84 ASP C OXT sing N N 85 ASP CB CG sing N N 86 ASP CB HB2 sing N N 87 ASP CB HB3 sing N N 88 ASP CG OD1 doub N N 89 ASP CG OD2 sing N N 90 ASP OD2 HD2 sing N N 91 ASP OXT HXT sing N N 92 CYS N CA sing N N 93 CYS N H sing N N 94 CYS N H2 sing N N 95 CYS CA C sing N N 96 CYS CA CB sing N N 97 CYS CA HA sing N N 98 CYS C O doub N N 99 CYS C OXT sing N N 100 CYS CB SG sing N N 101 CYS CB HB2 sing N N 102 CYS CB HB3 sing N N 103 CYS SG HG sing N N 104 CYS OXT HXT sing N N 105 GLN N CA sing N N 106 GLN N H sing N N 107 GLN N H2 sing N N 108 GLN CA C sing N N 109 GLN CA CB sing N N 110 GLN CA HA sing N N 111 GLN C O doub N N 112 GLN C OXT sing N N 113 GLN CB CG sing N N 114 GLN CB HB2 sing N N 115 GLN CB HB3 sing N N 116 GLN CG CD sing N N 117 GLN CG HG2 sing N N 118 GLN CG HG3 sing N N 119 GLN CD OE1 doub N N 120 GLN CD NE2 sing N N 121 GLN NE2 HE21 sing N N 122 GLN NE2 HE22 sing N N 123 GLN OXT HXT sing N N 124 GLU N CA sing N N 125 GLU N H sing N N 126 GLU N H2 sing N N 127 GLU CA C sing N N 128 GLU CA CB sing N N 129 GLU CA HA sing N N 130 GLU C O doub N N 131 GLU C OXT sing N N 132 GLU CB CG sing N N 133 GLU CB HB2 sing N N 134 GLU CB HB3 sing N N 135 GLU CG CD sing N N 136 GLU CG HG2 sing N N 137 GLU CG HG3 sing N N 138 GLU CD OE1 doub N N 139 GLU CD OE2 sing N N 140 GLU OE2 HE2 sing N N 141 GLU OXT HXT sing N N 142 GLY N CA sing N N 143 GLY N H sing N N 144 GLY N H2 sing N N 145 GLY CA C sing N N 146 GLY CA HA2 sing N N 147 GLY CA HA3 sing N N 148 GLY C O doub N N 149 GLY C OXT sing N N 150 GLY OXT HXT sing N N 151 HIS N CA sing N N 152 HIS N H sing N N 153 HIS N H2 sing N N 154 HIS CA C sing N N 155 HIS CA CB sing N N 156 HIS CA HA sing N N 157 HIS C O doub N N 158 HIS C OXT sing N N 159 HIS CB CG sing N N 160 HIS CB HB2 sing N N 161 HIS CB HB3 sing N N 162 HIS CG ND1 sing Y N 163 HIS CG CD2 doub Y N 164 HIS ND1 CE1 doub Y N 165 HIS ND1 HD1 sing N N 166 HIS CD2 NE2 sing Y N 167 HIS CD2 HD2 sing N N 168 HIS CE1 NE2 sing Y N 169 HIS CE1 HE1 sing N N 170 HIS NE2 HE2 sing N N 171 HIS OXT HXT sing N N 172 HOH O H1 sing N N 173 HOH O H2 sing N N 174 ILE N CA sing N N 175 ILE N H sing N N 176 ILE N H2 sing N N 177 ILE CA C sing N N 178 ILE CA CB sing N N 179 ILE CA HA sing N N 180 ILE C O doub N N 181 ILE C OXT sing N N 182 ILE CB CG1 sing N N 183 ILE CB CG2 sing N N 184 ILE CB HB sing N N 185 ILE CG1 CD1 sing N N 186 ILE CG1 HG12 sing N N 187 ILE CG1 HG13 sing N N 188 ILE CG2 HG21 sing N N 189 ILE CG2 HG22 sing N N 190 ILE CG2 HG23 sing N N 191 ILE CD1 HD11 sing N N 192 ILE CD1 HD12 sing N N 193 ILE CD1 HD13 sing N N 194 ILE OXT HXT sing N N 195 LEU N CA sing N N 196 LEU N H sing N N 197 LEU N H2 sing N N 198 LEU CA C sing N N 199 LEU CA CB sing N N 200 LEU CA HA sing N N 201 LEU C O doub N N 202 LEU C OXT sing N N 203 LEU CB CG sing N N 204 LEU CB HB2 sing N N 205 LEU CB HB3 sing N N 206 LEU CG CD1 sing N N 207 LEU CG CD2 sing N N 208 LEU CG HG sing N N 209 LEU CD1 HD11 sing N N 210 LEU CD1 HD12 sing N N 211 LEU CD1 HD13 sing N N 212 LEU CD2 HD21 sing N N 213 LEU CD2 HD22 sing N N 214 LEU CD2 HD23 sing N N 215 LEU OXT HXT sing N N 216 LYS N CA sing N N 217 LYS N H sing N N 218 LYS N H2 sing N N 219 LYS CA C sing N N 220 LYS CA CB sing N N 221 LYS CA HA sing N N 222 LYS C O doub N N 223 LYS C OXT sing N N 224 LYS CB CG sing N N 225 LYS CB HB2 sing N N 226 LYS CB HB3 sing N N 227 LYS CG CD sing N N 228 LYS CG HG2 sing N N 229 LYS CG HG3 sing N N 230 LYS CD CE sing N N 231 LYS CD HD2 sing N N 232 LYS CD HD3 sing N N 233 LYS CE NZ sing N N 234 LYS CE HE2 sing N N 235 LYS CE HE3 sing N N 236 LYS NZ HZ1 sing N N 237 LYS NZ HZ2 sing N N 238 LYS NZ HZ3 sing N N 239 LYS OXT HXT sing N N 240 MET N CA sing N N 241 MET N H sing N N 242 MET N H2 sing N N 243 MET CA C sing N N 244 MET CA CB sing N N 245 MET CA HA sing N N 246 MET C O doub N N 247 MET C OXT sing N N 248 MET CB CG sing N N 249 MET CB HB2 sing N N 250 MET CB HB3 sing N N 251 MET CG SD sing N N 252 MET CG HG2 sing N N 253 MET CG HG3 sing N N 254 MET SD CE sing N N 255 MET CE HE1 sing N N 256 MET CE HE2 sing N N 257 MET CE HE3 sing N N 258 MET OXT HXT sing N N 259 NO3 N O1 doub N N 260 NO3 N O2 sing N N 261 NO3 N O3 sing N N 262 PHE N CA sing N N 263 PHE N H sing N N 264 PHE N H2 sing N N 265 PHE CA C sing N N 266 PHE CA CB sing N N 267 PHE CA HA sing N N 268 PHE C O doub N N 269 PHE C OXT sing N N 270 PHE CB CG sing N N 271 PHE CB HB2 sing N N 272 PHE CB HB3 sing N N 273 PHE CG CD1 doub Y N 274 PHE CG CD2 sing Y N 275 PHE CD1 CE1 sing Y N 276 PHE CD1 HD1 sing N N 277 PHE CD2 CE2 doub Y N 278 PHE CD2 HD2 sing N N 279 PHE CE1 CZ doub Y N 280 PHE CE1 HE1 sing N N 281 PHE CE2 CZ sing Y N 282 PHE CE2 HE2 sing N N 283 PHE CZ HZ sing N N 284 PHE OXT HXT sing N N 285 PRO N CA sing N N 286 PRO N CD sing N N 287 PRO N H sing N N 288 PRO CA C sing N N 289 PRO CA CB sing N N 290 PRO CA HA sing N N 291 PRO C O doub N N 292 PRO C OXT sing N N 293 PRO CB CG sing N N 294 PRO CB HB2 sing N N 295 PRO CB HB3 sing N N 296 PRO CG CD sing N N 297 PRO CG HG2 sing N N 298 PRO CG HG3 sing N N 299 PRO CD HD2 sing N N 300 PRO CD HD3 sing N N 301 PRO OXT HXT sing N N 302 SER N CA sing N N 303 SER N H sing N N 304 SER N H2 sing N N 305 SER CA C sing N N 306 SER CA CB sing N N 307 SER CA HA sing N N 308 SER C O doub N N 309 SER C OXT sing N N 310 SER CB OG sing N N 311 SER CB HB2 sing N N 312 SER CB HB3 sing N N 313 SER OG HG sing N N 314 SER OXT HXT sing N N 315 THR N CA sing N N 316 THR N H sing N N 317 THR N H2 sing N N 318 THR CA C sing N N 319 THR CA CB sing N N 320 THR CA HA sing N N 321 THR C O doub N N 322 THR C OXT sing N N 323 THR CB OG1 sing N N 324 THR CB CG2 sing N N 325 THR CB HB sing N N 326 THR OG1 HG1 sing N N 327 THR CG2 HG21 sing N N 328 THR CG2 HG22 sing N N 329 THR CG2 HG23 sing N N 330 THR OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4LC2 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5DY7 _atom_sites.fract_transf_matrix[1][1] 0.016483 _atom_sites.fract_transf_matrix[1][2] 0.009517 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019033 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016030 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O S # loop_