HEADER HYDROLASE 24-SEP-15 5DYG TITLE STRUCTURE OF P97 N-D1 L198W MUTANT IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-460; COMPND 5 SYNONYM: TER ATPASE,15S MG(2+)-ATPASE P97 SUBUNIT,VALOSIN-CONTAINING COMPND 6 PROTEIN,VCP; COMPND 7 EC: 3.6.4.6; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VCP, AAA ATPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.K.TANG,D.XIA REVDAT 2 06-MAR-24 5DYG 1 REMARK REVDAT 1 10-FEB-16 5DYG 0 JRNL AUTH W.K.TANG,D.XIA JRNL TITL ROLE OF THE D1-D2 LINKER OF HUMAN VCP/P97 IN THE ASYMMETRY JRNL TITL 2 AND ATPASE ACTIVITY OF THE D1-DOMAIN. JRNL REF SCI REP V. 6 20037 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26818443 JRNL DOI 10.1038/SREP20037 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 25084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1315 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1606 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08000 REMARK 3 B22 (A**2) : -2.08000 REMARK 3 B33 (A**2) : 6.74000 REMARK 3 B12 (A**2) : -1.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3606 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3546 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4880 ; 1.801 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8170 ; 1.075 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 6.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;36.426 ;24.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 662 ;19.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.481 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4037 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 773 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1789 ; 2.710 ; 3.333 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1788 ; 2.706 ; 3.332 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2236 ; 4.367 ; 4.992 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2237 ; 4.366 ; 4.994 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1816 ; 3.380 ; 3.903 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1817 ; 3.379 ; 3.903 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2642 ; 5.546 ; 5.634 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3970 ; 7.847 ;26.431 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3944 ; 7.812 ;26.403 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26399 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.7 M SODIUM FORMATE, PH 6.0, 8 % REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 111060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 ARG A 461 REMARK 465 SER A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 135.48 -170.37 REMARK 500 ARG A 53 117.38 -38.73 REMARK 500 CYS A 209 54.78 -147.89 REMARK 500 ARG A 362 -117.42 -116.13 REMARK 500 THR A 403 44.89 -97.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DYI RELATED DB: PDB DBREF 5DYG A 1 460 UNP P55072 TERA_HUMAN 1 460 SEQADV 5DYG TRP A 198 UNP P55072 LEU 198 ENGINEERED MUTATION SEQADV 5DYG ARG A 461 UNP P55072 EXPRESSION TAG SEQADV 5DYG SER A 462 UNP P55072 EXPRESSION TAG SEQADV 5DYG HIS A 463 UNP P55072 EXPRESSION TAG SEQADV 5DYG HIS A 464 UNP P55072 EXPRESSION TAG SEQADV 5DYG HIS A 465 UNP P55072 EXPRESSION TAG SEQADV 5DYG HIS A 466 UNP P55072 EXPRESSION TAG SEQADV 5DYG HIS A 467 UNP P55072 EXPRESSION TAG SEQADV 5DYG HIS A 468 UNP P55072 EXPRESSION TAG SEQRES 1 A 468 MET ALA SER GLY ALA ASP SER LYS GLY ASP ASP LEU SER SEQRES 2 A 468 THR ALA ILE LEU LYS GLN LYS ASN ARG PRO ASN ARG LEU SEQRES 3 A 468 ILE VAL ASP GLU ALA ILE ASN GLU ASP ASN SER VAL VAL SEQRES 4 A 468 SER LEU SER GLN PRO LYS MET ASP GLU LEU GLN LEU PHE SEQRES 5 A 468 ARG GLY ASP THR VAL LEU LEU LYS GLY LYS LYS ARG ARG SEQRES 6 A 468 GLU ALA VAL CYS ILE VAL LEU SER ASP ASP THR CYS SER SEQRES 7 A 468 ASP GLU LYS ILE ARG MET ASN ARG VAL VAL ARG ASN ASN SEQRES 8 A 468 LEU ARG VAL ARG LEU GLY ASP VAL ILE SER ILE GLN PRO SEQRES 9 A 468 CYS PRO ASP VAL LYS TYR GLY LYS ARG ILE HIS VAL LEU SEQRES 10 A 468 PRO ILE ASP ASP THR VAL GLU GLY ILE THR GLY ASN LEU SEQRES 11 A 468 PHE GLU VAL TYR LEU LYS PRO TYR PHE LEU GLU ALA TYR SEQRES 12 A 468 ARG PRO ILE ARG LYS GLY ASP ILE PHE LEU VAL ARG GLY SEQRES 13 A 468 GLY MET ARG ALA VAL GLU PHE LYS VAL VAL GLU THR ASP SEQRES 14 A 468 PRO SER PRO TYR CYS ILE VAL ALA PRO ASP THR VAL ILE SEQRES 15 A 468 HIS CYS GLU GLY GLU PRO ILE LYS ARG GLU ASP GLU GLU SEQRES 16 A 468 GLU SER TRP ASN GLU VAL GLY TYR ASP ASP ILE GLY GLY SEQRES 17 A 468 CYS ARG LYS GLN LEU ALA GLN ILE LYS GLU MET VAL GLU SEQRES 18 A 468 LEU PRO LEU ARG HIS PRO ALA LEU PHE LYS ALA ILE GLY SEQRES 19 A 468 VAL LYS PRO PRO ARG GLY ILE LEU LEU TYR GLY PRO PRO SEQRES 20 A 468 GLY THR GLY LYS THR LEU ILE ALA ARG ALA VAL ALA ASN SEQRES 21 A 468 GLU THR GLY ALA PHE PHE PHE LEU ILE ASN GLY PRO GLU SEQRES 22 A 468 ILE MET SER LYS LEU ALA GLY GLU SER GLU SER ASN LEU SEQRES 23 A 468 ARG LYS ALA PHE GLU GLU ALA GLU LYS ASN ALA PRO ALA SEQRES 24 A 468 ILE ILE PHE ILE ASP GLU LEU ASP ALA ILE ALA PRO LYS SEQRES 25 A 468 ARG GLU LYS THR HIS GLY GLU VAL GLU ARG ARG ILE VAL SEQRES 26 A 468 SER GLN LEU LEU THR LEU MET ASP GLY LEU LYS GLN ARG SEQRES 27 A 468 ALA HIS VAL ILE VAL MET ALA ALA THR ASN ARG PRO ASN SEQRES 28 A 468 SER ILE ASP PRO ALA LEU ARG ARG PHE GLY ARG PHE ASP SEQRES 29 A 468 ARG GLU VAL ASP ILE GLY ILE PRO ASP ALA THR GLY ARG SEQRES 30 A 468 LEU GLU ILE LEU GLN ILE HIS THR LYS ASN MET LYS LEU SEQRES 31 A 468 ALA ASP ASP VAL ASP LEU GLU GLN VAL ALA ASN GLU THR SEQRES 32 A 468 HIS GLY HIS VAL GLY ALA ASP LEU ALA ALA LEU CYS SER SEQRES 33 A 468 GLU ALA ALA LEU GLN ALA ILE ARG LYS LYS MET ASP LEU SEQRES 34 A 468 ILE ASP LEU GLU ASP GLU THR ILE ASP ALA GLU VAL MET SEQRES 35 A 468 ASN SER LEU ALA VAL THR MET ASP ASP PHE ARG TRP ALA SEQRES 36 A 468 LEU SER GLN SER ASN ARG SER HIS HIS HIS HIS HIS HIS HET ADP A 800 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *97(H2 O) HELIX 1 AA1 SER A 42 GLN A 50 1 9 HELIX 2 AA2 ASN A 85 ARG A 93 1 9 HELIX 3 AA3 ASP A 120 GLU A 124 5 5 HELIX 4 AA4 ASN A 129 LEU A 140 1 12 HELIX 5 AA5 LYS A 190 GLU A 194 5 5 HELIX 6 AA6 GLY A 202 ILE A 206 5 5 HELIX 7 AA7 CYS A 209 HIS A 226 1 18 HELIX 8 AA8 ALA A 228 ILE A 233 1 6 HELIX 9 AA9 GLY A 250 GLY A 263 1 14 HELIX 10 AB1 GLY A 271 SER A 276 1 6 HELIX 11 AB2 GLY A 280 ASN A 296 1 17 HELIX 12 AB3 GLU A 305 ILE A 309 5 5 HELIX 13 AB4 GLY A 318 GLY A 334 1 17 HELIX 14 AB5 LEU A 335 ARG A 338 5 4 HELIX 15 AB6 ASP A 354 ARG A 359 5 6 HELIX 16 AB7 ASP A 373 LYS A 386 1 14 HELIX 17 AB8 ASP A 395 THR A 403 1 9 HELIX 18 AB9 VAL A 407 GLU A 433 1 27 HELIX 19 AC1 ASP A 438 LEU A 445 1 8 HELIX 20 AC2 THR A 448 SER A 457 1 10 SHEET 1 AA1 7 ARG A 25 GLU A 30 0 SHEET 2 AA1 7 LYS A 81 MET A 84 1 O ILE A 82 N ASP A 29 SHEET 3 AA1 7 VAL A 38 LEU A 41 -1 N SER A 40 O ARG A 83 SHEET 4 AA1 7 GLU A 66 SER A 73 1 O ILE A 70 N VAL A 39 SHEET 5 AA1 7 THR A 56 LYS A 60 -1 N LEU A 59 O ALA A 67 SHEET 6 AA1 7 VAL A 99 PRO A 104 -1 O GLN A 103 N LEU A 58 SHEET 7 AA1 7 ARG A 25 GLU A 30 -1 N LEU A 26 O ILE A 100 SHEET 1 AA2 4 ILE A 151 GLY A 156 0 SHEET 2 AA2 4 ARG A 159 ASP A 169 -1 O PHE A 163 N PHE A 152 SHEET 3 AA2 4 ARG A 113 PRO A 118 -1 N LEU A 117 O LYS A 164 SHEET 4 AA2 4 VAL A 181 HIS A 183 1 O HIS A 183 N ILE A 114 SHEET 1 AA3 2 ARG A 144 ARG A 147 0 SHEET 2 AA3 2 TYR A 173 VAL A 176 -1 O VAL A 176 N ARG A 144 SHEET 1 AA4 5 PHE A 265 ASN A 270 0 SHEET 2 AA4 5 ALA A 299 ASP A 304 1 O ILE A 300 N PHE A 265 SHEET 3 AA4 5 VAL A 341 THR A 347 1 O MET A 344 N ILE A 301 SHEET 4 AA4 5 GLY A 240 TYR A 244 1 N LEU A 243 O ALA A 345 SHEET 5 AA4 5 ARG A 365 ASP A 368 1 O VAL A 367 N TYR A 244 SHEET 1 AA5 2 LYS A 389 LEU A 390 0 SHEET 2 AA5 2 ALA A 446 VAL A 447 1 O VAL A 447 N LYS A 389 CISPEP 1 ASP A 169 PRO A 170 0 -3.37 CISPEP 2 SER A 171 PRO A 172 0 -1.65 CISPEP 3 ALA A 297 PRO A 298 0 -1.54 CISPEP 4 ALA A 339 HIS A 340 0 6.65 SITE 1 AC1 15 ASP A 205 ILE A 206 GLY A 207 GLY A 248 SITE 2 AC1 15 THR A 249 GLY A 250 LYS A 251 THR A 252 SITE 3 AC1 15 LEU A 253 ARG A 359 ILE A 380 HIS A 384 SITE 4 AC1 15 GLY A 408 ALA A 409 HOH A 903 CRYST1 145.584 145.584 84.002 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006869 0.003966 0.000000 0.00000 SCALE2 0.000000 0.007932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011904 0.00000