HEADER TRANSFERASE 24-SEP-15 5DYJ TITLE MYSOSIN HEAVY CHAIN KINASE A CATALYTIC DOMAIN MUTANT - D663A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN HEAVY CHAIN KINASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 552-841; COMPND 5 SYNONYM: MHCK-A; COMPND 6 EC: 2.7.11.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: MHKA, MHCKA, DDB_G0291231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.VAN STAALDUINEN,Y.YANG,Z.JIA REVDAT 2 27-SEP-23 5DYJ 1 REMARK REVDAT 1 08-JUN-16 5DYJ 0 JRNL AUTH Q.YE,Y.YANG,L.VAN STAALDUINEN,S.W.CRAWLEY,L.LIU,S.BRENNAN, JRNL AUTH 2 G.P.COTE,Z.JIA JRNL TITL STRUCTURE OF THE DICTYOSTELIUM MYOSIN-II HEAVY CHAIN KINASE JRNL TITL 2 A (MHCK-A) ALPHA-KINASE DOMAIN APOENZYME REVEALS A NOVEL JRNL TITL 3 AUTOINHIBITED CONFORMATION. JRNL REF SCI REP V. 6 26634 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27211275 JRNL DOI 10.1038/SREP26634 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9945 - 5.1734 1.00 2918 154 0.1692 0.1892 REMARK 3 2 5.1734 - 4.1180 1.00 2783 146 0.1483 0.1940 REMARK 3 3 4.1180 - 3.6009 1.00 2763 146 0.1692 0.2456 REMARK 3 4 3.6009 - 3.2733 1.00 2745 144 0.1938 0.2355 REMARK 3 5 3.2733 - 3.0395 1.00 2729 144 0.2153 0.2632 REMARK 3 6 3.0395 - 2.8609 1.00 2739 145 0.2222 0.2815 REMARK 3 7 2.8609 - 2.7179 1.00 2695 142 0.2223 0.2869 REMARK 3 8 2.7179 - 2.5999 1.00 2711 143 0.2222 0.2635 REMARK 3 9 2.5999 - 2.5000 1.00 2716 143 0.2430 0.3055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.023 4201 REMARK 3 ANGLE : 0.682 5670 REMARK 3 CHIRALITY : 0.045 628 REMARK 3 PLANARITY : 0.004 709 REMARK 3 DIHEDRAL : 11.024 2523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03318 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 16.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM PHOSPHATE, TRIS, REMARK 280 DICHLOROMETHANE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.07000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 535 REMARK 465 GLY A 536 REMARK 465 GLY A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 ASN A 546 REMARK 465 LEU A 547 REMARK 465 TYR A 548 REMARK 465 PHE A 549 REMARK 465 GLN A 550 REMARK 465 GLY A 551 REMARK 465 GLY A 810 REMARK 465 GLY A 811 REMARK 465 VAL A 812 REMARK 465 LEU A 813 REMARK 465 SER A 814 REMARK 465 GLY A 815 REMARK 465 ASN A 816 REMARK 465 ASN A 817 REMARK 465 ASN A 818 REMARK 465 GLN A 819 REMARK 465 GLN A 820 REMARK 465 LEU A 821 REMARK 465 GLN A 822 REMARK 465 GLN A 823 REMARK 465 GLY A 824 REMARK 465 THR A 825 REMARK 465 MET A 826 REMARK 465 VAL A 827 REMARK 465 LYS A 828 REMARK 465 ALA A 829 REMARK 465 ASP A 830 REMARK 465 ILE A 831 REMARK 465 LEU A 832 REMARK 465 PRO A 833 REMARK 465 GLU A 834 REMARK 465 LEU A 835 REMARK 465 MET A 836 REMARK 465 PRO A 837 REMARK 465 SER A 838 REMARK 465 ASP A 839 REMARK 465 ASN A 840 REMARK 465 THR A 841 REMARK 465 MET B 535 REMARK 465 GLY B 536 REMARK 465 GLY B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 545 REMARK 465 ASN B 546 REMARK 465 LEU B 547 REMARK 465 TYR B 548 REMARK 465 PHE B 549 REMARK 465 GLN B 550 REMARK 465 GLY B 551 REMARK 465 SER B 702 REMARK 465 SER B 703 REMARK 465 ASN B 704 REMARK 465 GLY B 705 REMARK 465 GLN B 706 REMARK 465 GLY B 810 REMARK 465 GLY B 811 REMARK 465 VAL B 812 REMARK 465 LEU B 813 REMARK 465 SER B 814 REMARK 465 GLY B 815 REMARK 465 ASN B 816 REMARK 465 ASN B 817 REMARK 465 ASN B 818 REMARK 465 GLN B 819 REMARK 465 GLN B 820 REMARK 465 LEU B 821 REMARK 465 GLN B 822 REMARK 465 GLN B 823 REMARK 465 GLY B 824 REMARK 465 THR B 825 REMARK 465 MET B 826 REMARK 465 VAL B 827 REMARK 465 LYS B 828 REMARK 465 ALA B 829 REMARK 465 ASP B 830 REMARK 465 ILE B 831 REMARK 465 LEU B 832 REMARK 465 PRO B 833 REMARK 465 GLU B 834 REMARK 465 LEU B 835 REMARK 465 MET B 836 REMARK 465 PRO B 837 REMARK 465 SER B 838 REMARK 465 ASP B 839 REMARK 465 ASN B 840 REMARK 465 THR B 841 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 649 CG CD CE NZ REMARK 470 GLU A 650 CG CD OE1 OE2 REMARK 470 GLU A 652 CG CD OE1 OE2 REMARK 470 GLN A 653 CG CD OE1 NE2 REMARK 470 LYS B 615 CG CD CE NZ REMARK 470 GLN B 653 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1004 O HOH A 1004 2455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 651 72.75 -102.80 REMARK 500 ASN A 704 -59.42 65.08 REMARK 500 TYR A 727 49.36 -150.89 REMARK 500 VAL A 755 -163.71 -124.00 REMARK 500 ASP A 761 -124.58 56.77 REMARK 500 ASN A 797 -161.46 -125.58 REMARK 500 TYR B 727 47.13 -148.67 REMARK 500 MET B 752 115.24 -162.10 REMARK 500 VAL B 755 -161.70 -126.14 REMARK 500 ASP B 761 -120.06 56.62 REMARK 500 ASN B 797 -166.94 -121.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 742 ND1 REMARK 620 2 HIS A 794 NE2 140.8 REMARK 620 3 CYS A 800 SG 98.4 120.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 742 ND1 REMARK 620 2 HIS B 794 NE2 92.9 REMARK 620 3 CYS B 796 SG 102.8 98.5 REMARK 620 4 CYS B 800 SG 114.2 114.6 127.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 904 DBREF 5DYJ A 552 841 UNP P42527 MHCKA_DICDI 552 841 DBREF 5DYJ B 552 841 UNP P42527 MHCKA_DICDI 552 841 SEQADV 5DYJ MET A 535 UNP P42527 INITIATING METHIONINE SEQADV 5DYJ GLY A 536 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLY A 537 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS A 538 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS A 539 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS A 540 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS A 541 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS A 542 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS A 543 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLY A 544 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLU A 545 UNP P42527 EXPRESSION TAG SEQADV 5DYJ ASN A 546 UNP P42527 EXPRESSION TAG SEQADV 5DYJ LEU A 547 UNP P42527 EXPRESSION TAG SEQADV 5DYJ TYR A 548 UNP P42527 EXPRESSION TAG SEQADV 5DYJ PHE A 549 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLN A 550 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLY A 551 UNP P42527 EXPRESSION TAG SEQADV 5DYJ ALA A 663 UNP P42527 ASP 663 ENGINEERED MUTATION SEQADV 5DYJ ASN A 818 UNP P42527 LYS 818 CONFLICT SEQADV 5DYJ GLN A 819 UNP P42527 LYS 819 CONFLICT SEQADV 5DYJ LYS A 828 UNP P42527 MET 828 CONFLICT SEQADV 5DYJ ALA A 829 UNP P42527 PRO 829 CONFLICT SEQADV 5DYJ MET B 535 UNP P42527 INITIATING METHIONINE SEQADV 5DYJ GLY B 536 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLY B 537 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS B 538 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS B 539 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS B 540 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS B 541 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS B 542 UNP P42527 EXPRESSION TAG SEQADV 5DYJ HIS B 543 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLY B 544 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLU B 545 UNP P42527 EXPRESSION TAG SEQADV 5DYJ ASN B 546 UNP P42527 EXPRESSION TAG SEQADV 5DYJ LEU B 547 UNP P42527 EXPRESSION TAG SEQADV 5DYJ TYR B 548 UNP P42527 EXPRESSION TAG SEQADV 5DYJ PHE B 549 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLN B 550 UNP P42527 EXPRESSION TAG SEQADV 5DYJ GLY B 551 UNP P42527 EXPRESSION TAG SEQADV 5DYJ ALA B 663 UNP P42527 ASP 663 ENGINEERED MUTATION SEQADV 5DYJ ASN B 818 UNP P42527 LYS 818 CONFLICT SEQADV 5DYJ GLN B 819 UNP P42527 LYS 819 CONFLICT SEQADV 5DYJ LYS B 828 UNP P42527 MET 828 CONFLICT SEQADV 5DYJ ALA B 829 UNP P42527 PRO 829 CONFLICT SEQRES 1 A 307 MET GLY GLY HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU SEQRES 2 A 307 TYR PHE GLN GLY ILE SER SER GLU THR GLY GLU MET GLY SEQRES 3 A 307 ILE LEU TRP GLU PHE ASP PRO ILE ILE ASN LYS TRP ILE SEQRES 4 A 307 ARG LEU SER MET LYS LEU LYS VAL GLU ARG LYS PRO PHE SEQRES 5 A 307 ALA GLU GLY ALA LEU ARG GLU ALA TYR HIS THR VAL SER SEQRES 6 A 307 LEU GLY VAL GLY THR ASP GLU ASN TYR PRO LEU GLY TPO SEQRES 7 A 307 THR THR LYS LEU PHE PRO PRO ILE GLU MET ILE SER PRO SEQRES 8 A 307 ILE SER LYS ASN ASN GLU ALA MET THR GLN LEU LYS ASN SEQRES 9 A 307 GLY THR LYS PHE VAL LEU LYS LEU TYR LYS LYS GLU ALA SEQRES 10 A 307 GLU GLN GLN ALA SER ARG GLU LEU TYR PHE GLU ALA VAL SEQRES 11 A 307 LYS MET GLN MET VAL CYS ARG ASP TRP GLY ASN LYS PHE SEQRES 12 A 307 ASN GLN LYS LYS PRO PRO LYS LYS ILE GLU PHE LEU MET SEQRES 13 A 307 SER TRP VAL VAL GLU LEU ILE ASP ARG SER PRO SER SER SEQRES 14 A 307 ASN GLY GLN PRO ILE LEU CYS SER ILE GLU PRO LEU LEU SEQRES 15 A 307 VAL GLY GLU PHE LYS LYS ASN ASN SER ASN TYR GLY ALA SEQRES 16 A 307 VAL LEU THR ASN ARG SER THR PRO GLN ALA PHE SER HIS SEQRES 17 A 307 PHE THR TYR GLU LEU SER ASN LYS GLN MET ILE VAL VAL SEQRES 18 A 307 ASP ILE GLN GLY VAL ASP ASP LEU TYR THR ASP PRO GLN SEQRES 19 A 307 ILE HIS THR PRO ASP GLY LYS GLY PHE GLY LEU GLY ASN SEQRES 20 A 307 LEU GLY LYS ALA GLY ILE ASN LYS PHE ILE THR THR HIS SEQRES 21 A 307 LYS CYS ASN ALA VAL CYS ALA LEU LEU ASP LEU ASP VAL SEQRES 22 A 307 LYS LEU GLY GLY VAL LEU SER GLY ASN ASN ASN GLN GLN SEQRES 23 A 307 LEU GLN GLN GLY THR MET VAL LYS ALA ASP ILE LEU PRO SEQRES 24 A 307 GLU LEU MET PRO SER ASP ASN THR SEQRES 1 B 307 MET GLY GLY HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU SEQRES 2 B 307 TYR PHE GLN GLY ILE SER SER GLU THR GLY GLU MET GLY SEQRES 3 B 307 ILE LEU TRP GLU PHE ASP PRO ILE ILE ASN LYS TRP ILE SEQRES 4 B 307 ARG LEU SER MET LYS LEU LYS VAL GLU ARG LYS PRO PHE SEQRES 5 B 307 ALA GLU GLY ALA LEU ARG GLU ALA TYR HIS THR VAL SER SEQRES 6 B 307 LEU GLY VAL GLY THR ASP GLU ASN TYR PRO LEU GLY TPO SEQRES 7 B 307 THR THR LYS LEU PHE PRO PRO ILE GLU MET ILE SER PRO SEQRES 8 B 307 ILE SER LYS ASN ASN GLU ALA MET THR GLN LEU LYS ASN SEQRES 9 B 307 GLY THR LYS PHE VAL LEU LYS LEU TYR LYS LYS GLU ALA SEQRES 10 B 307 GLU GLN GLN ALA SER ARG GLU LEU TYR PHE GLU ALA VAL SEQRES 11 B 307 LYS MET GLN MET VAL CYS ARG ASP TRP GLY ASN LYS PHE SEQRES 12 B 307 ASN GLN LYS LYS PRO PRO LYS LYS ILE GLU PHE LEU MET SEQRES 13 B 307 SER TRP VAL VAL GLU LEU ILE ASP ARG SER PRO SER SER SEQRES 14 B 307 ASN GLY GLN PRO ILE LEU CYS SER ILE GLU PRO LEU LEU SEQRES 15 B 307 VAL GLY GLU PHE LYS LYS ASN ASN SER ASN TYR GLY ALA SEQRES 16 B 307 VAL LEU THR ASN ARG SER THR PRO GLN ALA PHE SER HIS SEQRES 17 B 307 PHE THR TYR GLU LEU SER ASN LYS GLN MET ILE VAL VAL SEQRES 18 B 307 ASP ILE GLN GLY VAL ASP ASP LEU TYR THR ASP PRO GLN SEQRES 19 B 307 ILE HIS THR PRO ASP GLY LYS GLY PHE GLY LEU GLY ASN SEQRES 20 B 307 LEU GLY LYS ALA GLY ILE ASN LYS PHE ILE THR THR HIS SEQRES 21 B 307 LYS CYS ASN ALA VAL CYS ALA LEU LEU ASP LEU ASP VAL SEQRES 22 B 307 LYS LEU GLY GLY VAL LEU SER GLY ASN ASN ASN GLN GLN SEQRES 23 B 307 LEU GLN GLN GLY THR MET VAL LYS ALA ASP ILE LEU PRO SEQRES 24 B 307 GLU LEU MET PRO SER ASP ASN THR MODRES 5DYJ TPO A 612 THR MODIFIED RESIDUE MODRES 5DYJ TPO B 612 THR MODIFIED RESIDUE HET TPO A 612 11 HET TPO B 612 11 HET PO4 A 901 5 HET ZN A 902 1 HET GOL A 903 6 HET AMP A 904 23 HET PO4 B 901 5 HET ZN B 902 1 HET GOL B 903 6 HET AMP B 904 23 HETNAM TPO PHOSPHOTHREONINE HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 AMP 2(C10 H14 N5 O7 P) FORMUL 11 HOH *101(H2 O) HELIX 1 AA1 PRO A 619 ILE A 623 5 5 HELIX 2 AA2 GLU A 631 LEU A 636 1 6 HELIX 3 AA3 ALA A 651 ALA A 655 5 5 HELIX 4 AA4 SER A 656 LYS A 680 1 25 HELIX 5 AA5 ARG A 734 SER A 748 1 15 HELIX 6 AA6 LEU A 782 THR A 793 1 12 HELIX 7 AA7 ASN A 797 LEU A 803 1 7 HELIX 8 AA8 PRO B 619 ILE B 623 5 5 HELIX 9 AA9 GLU B 631 LEU B 636 1 6 HELIX 10 AB1 SER B 656 LYS B 680 1 25 HELIX 11 AB2 ARG B 734 SER B 748 1 15 HELIX 12 AB3 LEU B 782 THR B 793 1 12 HELIX 13 AB4 ASN B 797 LEU B 803 1 7 SHEET 1 AA1 8 ALA A 587 GLU A 588 0 SHEET 2 AA1 8 ARG A 592 GLY A 603 -1 O ALA A 594 N ALA A 587 SHEET 3 AA1 8 LYS A 641 TYR A 647 -1 O LEU A 644 N TYR A 595 SHEET 4 AA1 8 LEU A 709 PRO A 714 -1 O SER A 711 N LYS A 645 SHEET 5 AA1 8 TRP A 692 GLU A 695 -1 N VAL A 694 O CYS A 710 SHEET 6 AA1 8 GLU A 558 ASP A 566 -1 N TRP A 563 O VAL A 693 SHEET 7 AA1 8 LYS A 571 VAL A 581 -1 O LEU A 575 N LEU A 562 SHEET 8 AA1 8 ARG A 592 GLY A 603 -1 O LEU A 600 N LYS A 578 SHEET 1 AA2 4 GLU A 687 PHE A 688 0 SHEET 2 AA2 4 LEU A 763 THR A 765 1 O TYR A 764 N GLU A 687 SHEET 3 AA2 4 GLN A 758 VAL A 760 -1 N GLN A 758 O THR A 765 SHEET 4 AA2 4 LYS A 721 LYS A 722 -1 N LYS A 721 O GLY A 759 SHEET 1 AA3 2 ILE A 753 VAL A 755 0 SHEET 2 AA3 2 GLN A 768 HIS A 770 -1 O GLN A 768 N VAL A 755 SHEET 1 AA4 8 ALA B 587 GLU B 588 0 SHEET 2 AA4 8 ARG B 592 GLY B 603 -1 O ALA B 594 N ALA B 587 SHEET 3 AA4 8 LYS B 641 TYR B 647 -1 O LEU B 644 N TYR B 595 SHEET 4 AA4 8 ILE B 708 PRO B 714 -1 O GLU B 713 N VAL B 643 SHEET 5 AA4 8 TRP B 692 LEU B 696 -1 N LEU B 696 O ILE B 708 SHEET 6 AA4 8 GLU B 558 ASP B 566 -1 N TRP B 563 O VAL B 693 SHEET 7 AA4 8 LYS B 571 VAL B 581 -1 O ILE B 573 N GLU B 564 SHEET 8 AA4 8 ARG B 592 GLY B 603 -1 O LEU B 600 N LYS B 578 SHEET 1 AA5 4 GLU B 687 PHE B 688 0 SHEET 2 AA5 4 LEU B 763 THR B 765 1 O TYR B 764 N GLU B 687 SHEET 3 AA5 4 GLN B 758 VAL B 760 -1 N VAL B 760 O LEU B 763 SHEET 4 AA5 4 LYS B 721 LYS B 722 -1 N LYS B 721 O GLY B 759 SHEET 1 AA6 2 ILE B 753 VAL B 755 0 SHEET 2 AA6 2 GLN B 768 HIS B 770 -1 O GLN B 768 N VAL B 755 LINK C GLY A 611 N TPO A 612 1555 1555 1.33 LINK C TPO A 612 N THR A 613 1555 1555 1.33 LINK C GLY B 611 N TPO B 612 1555 1555 1.33 LINK C TPO B 612 N THR B 613 1555 1555 1.33 LINK ND1 HIS A 742 ZN ZN A 902 1555 1555 2.00 LINK NE2 HIS A 794 ZN ZN A 902 1555 1555 2.00 LINK SG CYS A 800 ZN ZN A 902 1555 1555 2.43 LINK ND1 HIS B 742 ZN ZN B 902 1555 1555 2.05 LINK NE2 HIS B 794 ZN ZN B 902 1555 1555 2.04 LINK SG CYS B 796 ZN ZN B 902 1555 1555 2.39 LINK SG CYS B 800 ZN ZN B 902 1555 1555 2.24 CISPEP 1 PHE A 617 PRO A 618 0 -0.55 CISPEP 2 LYS A 649 GLU A 650 0 -7.48 CISPEP 3 GLU A 650 ALA A 651 0 9.02 CISPEP 4 SER A 703 ASN A 704 0 -8.40 CISPEP 5 PHE B 617 PRO B 618 0 -2.10 SITE 1 AC1 5 LYS A 684 ARG A 734 SER A 735 THR A 736 SITE 2 AC1 5 HOH A1004 SITE 1 AC2 4 HIS A 742 HIS A 794 CYS A 796 CYS A 800 SITE 1 AC3 3 ARG A 574 ASP A 605 SER A 627 SITE 1 AC4 11 PHE A 586 ALA A 587 GLU A 588 GLY A 589 SITE 2 AC4 11 ARG A 592 LYS A 645 GLU A 713 PRO A 714 SITE 3 AC4 11 LEU A 716 PHE A 720 ASP A 766 SITE 1 AC5 4 LYS B 684 ARG B 734 SER B 735 THR B 736 SITE 1 AC6 4 HIS B 742 HIS B 794 CYS B 796 CYS B 800 SITE 1 AC7 4 ASP B 605 PRO B 625 SER B 627 HOH B1025 SITE 1 AC8 10 ALA B 587 GLU B 588 GLY B 589 ARG B 592 SITE 2 AC8 10 LYS B 645 GLU B 713 PRO B 714 LEU B 716 SITE 3 AC8 10 PHE B 720 ASP B 766 CRYST1 84.140 110.250 79.250 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012618 0.00000