HEADER HYDROLASE 24-SEP-15 5DYN TITLE B. FRAGILIS CYSTEINE PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 7-134; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PUTATIVE PEPTIDASE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 135-380; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 817; SOURCE 4 STRAIN: ATCC 43859; SOURCE 5 GENE: BF9343_2671; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 13 ORGANISM_TAXID: 817; SOURCE 14 STRAIN: ATCC 43859; SOURCE 15 GENE: BF9343_2671; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS CYSTEINE PROTEASE, ENZYME, CLEAVAGE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.M.CHOI,J.HERROU,A.L.HECHT,J.R.TURNER,S.CROSSON,J.BUBECK WARDENBURG REVDAT 6 27-SEP-23 5DYN 1 LINK REVDAT 5 25-DEC-19 5DYN 1 REMARK REVDAT 4 27-SEP-17 5DYN 1 REMARK REVDAT 3 18-MAY-16 5DYN 1 JRNL REVDAT 2 11-MAY-16 5DYN 1 JRNL REVDAT 1 30-MAR-16 5DYN 0 JRNL AUTH V.M.CHOI,J.HERROU,A.L.HECHT,W.P.TEOH,J.R.TURNER,S.CROSSON, JRNL AUTH 2 J.BUBECK WARDENBURG JRNL TITL ACTIVATION OF BACTEROIDES FRAGILIS TOXIN BY A NOVEL JRNL TITL 2 BACTERIAL PROTEASE CONTRIBUTES TO ANAEROBIC SEPSIS IN MICE. JRNL REF NAT. MED. V. 22 563 2016 JRNL REFN ISSN 1546-170X JRNL PMID 27089515 JRNL DOI 10.1038/NM.4077 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4000 - 4.2394 1.00 2774 125 0.1606 0.1739 REMARK 3 2 4.2394 - 3.3656 1.00 2611 131 0.1560 0.2017 REMARK 3 3 3.3656 - 2.9403 1.00 2563 160 0.1857 0.2509 REMARK 3 4 2.9403 - 2.6716 1.00 2569 126 0.2104 0.2790 REMARK 3 5 2.6716 - 2.4801 1.00 2544 147 0.2262 0.3228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2967 REMARK 3 ANGLE : 0.690 4033 REMARK 3 CHIRALITY : 0.025 419 REMARK 3 PLANARITY : 0.003 523 REMARK 3 DIHEDRAL : 12.639 1073 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000214023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13750 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 38.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.220 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 3UWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM CITRATE DIBASIC (PH REMARK 280 5), 25% (W/V) PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 62.16000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 THR A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 27 REMARK 465 PRO A 28 REMARK 465 SER A 29 REMARK 465 ASN B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 -159.06 -163.61 REMARK 500 GLN A 62 34.16 -91.50 REMARK 500 ASP A 64 97.80 -67.65 REMARK 500 ASP A 76 -128.87 -97.47 REMARK 500 SER A 134 -164.92 -176.00 REMARK 500 GLU A 137 51.15 -155.58 REMARK 500 SER B 200 -166.98 -171.11 REMARK 500 THR B 203 -153.79 -115.87 REMARK 500 LYS B 301 -64.54 -128.09 REMARK 500 ASN B 318 -159.56 -79.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 42 OE1 REMARK 620 2 ASP A 75 OD2 95.5 REMARK 620 3 GLN A 104 O 158.5 84.8 REMARK 620 4 ASP B 152 OD1 90.6 112.0 109.4 REMARK 620 5 ASP B 152 OD2 113.5 65.4 86.3 50.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 42 OE1 REMARK 620 2 ASP A 75 OD1 94.1 REMARK 620 3 ASP A 76 O 92.4 103.9 REMARK 620 4 SER A 78 O 175.7 84.4 91.9 REMARK 620 5 GLU A 103 OE1 73.5 84.7 164.2 102.3 REMARK 620 6 GLU A 103 OE2 94.3 120.8 134.1 83.0 43.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD1 REMARK 620 2 GLU A 55 OE1 102.0 REMARK 620 3 GLU A 55 OE2 99.8 46.5 REMARK 620 4 HOH A 504 O 99.1 101.4 55.6 REMARK 620 5 PRO B 208 O 81.0 172.5 140.2 84.8 REMARK 620 6 ALA B 210 O 112.8 75.6 118.4 148.0 96.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 181 O REMARK 620 2 PRO B 202 O 115.5 REMARK 620 3 SER B 359 OG 123.8 115.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 237 O REMARK 620 2 TRP B 252 O 125.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 265 OE1 REMARK 620 2 ASN B 268 OD1 94.4 REMARK 620 3 ALA B 327 O 139.0 115.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 291 O REMARK 620 2 ASP B 354 OD1 128.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 360 OG1 REMARK 620 2 TYR B 374 OH 99.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 406 DBREF 5DYN A 20 147 UNP Q5LBR6 Q5LBR6_BACFN 7 134 DBREF 5DYN B 148 393 UNP Q5LBR6 Q5LBR6_BACFN 135 380 SEQADV 5DYN MET A 18 UNP Q5LBR6 INITIATING METHIONINE SEQADV 5DYN ALA A 19 UNP Q5LBR6 EXPRESSION TAG SEQADV 5DYN ASP B 242 UNP Q5LBR6 ASN 229 CONFLICT SEQADV 5DYN THR B 372 UNP Q5LBR6 ALA 359 CONFLICT SEQADV 5DYN HIS B 394 UNP Q5LBR6 EXPRESSION TAG SEQADV 5DYN HIS B 395 UNP Q5LBR6 EXPRESSION TAG SEQADV 5DYN HIS B 396 UNP Q5LBR6 EXPRESSION TAG SEQADV 5DYN HIS B 397 UNP Q5LBR6 EXPRESSION TAG SEQADV 5DYN HIS B 398 UNP Q5LBR6 EXPRESSION TAG SEQADV 5DYN HIS B 399 UNP Q5LBR6 EXPRESSION TAG SEQRES 1 A 130 MET ALA GLN GLN ASP GLY PRO THR PRO GLU PRO SER VAL SEQRES 2 A 130 GLY SER ARG THR VAL LEU VAL TYR MET ILE ALA GLN ASN SEQRES 3 A 130 SER LEU ALA PRO LEU ALA SER ALA ASP ILE GLU GLU MET SEQRES 4 A 130 LYS GLU GLY MET ARG GLN VAL ASP ALA THR SER GLY ASN SEQRES 5 A 130 LEU LEU VAL TYR ILE ASP ASP TYR SER ALA PRO ARG LEU SEQRES 6 A 130 ILE ARG LEU GLY LYS ASP LYS LYS GLY LYS VAL VAL GLU SEQRES 7 A 130 GLU THR ILE GLU ASN TYR PRO GLU GLN ASN SER ALA ASP SEQRES 8 A 130 ALA ASN VAL MET LYS LYS VAL ILE SER THR ALA PHE ASN SEQRES 9 A 130 GLN TYR LYS ALA GLU LYS TYR GLY MET VAL PHE TRP SER SEQRES 10 A 130 HIS GLY GLU GLY TRP ILE PRO SER PRO ALA LYS THR ARG SEQRES 1 B 252 TRP PHE GLY GLN ASP GLY ASN ASN TYR MET ASP ILE ALA SEQRES 2 B 252 ASP LEU HIS ALA ALA LEU GLN VAL ALA PRO ASP LEU ASP SEQRES 3 B 252 PHE LEU PHE PHE ASP ALA CYS PHE MET GLU ALA VAL GLU SEQRES 4 B 252 VAL ALA TYR ALA LEU ARG ASP CYS GLY SER TYR LEU ILE SEQRES 5 B 252 SER SER PRO THR GLU ILE PRO GLY PRO GLY ALA PRO TYR SEQRES 6 B 252 GLN THR VAL VAL PRO ALA MET PHE SER ALA GLU ASN ALA SEQRES 7 B 252 ALA LEU LYS ILE ALA SER CYS TYR TYR ASP TYR TYR GLN SEQRES 8 B 252 SER ARG TYR ASP ASP GLY ILE GLY MET SER ASN GLU ASP SEQRES 9 B 252 TRP THR GLY GLY VAL SER VAL GLY VAL ALA LYS MET SER SEQRES 10 B 252 GLU LEU GLU ASN LEU ALA VAL ALA THR SER LYS VAL LEU SEQRES 11 B 252 PRO ARG TYR ILE THR GLY LYS GLN ASN PHE ASP LEU SER SEQRES 12 B 252 GLY VAL MET CYS TYR ASP ARG ARG THR ASP LYS GLN TYR SEQRES 13 B 252 TYR TYR ASP LEU ASP ARG PHE ILE TYR GLN ILE THR ALA SEQRES 14 B 252 GLY ASN GLY ASP TYR ASP SER TRP ARG GLU ALA PHE ASP SEQRES 15 B 252 LYS VAL MET VAL TYR TRP LYS SER THR PRO ARG ASN TYR SEQRES 16 B 252 SER ALA TYR ALA GLY MET PHE THR MET ASN GLN ASP ALA SEQRES 17 B 252 LYS GLY LEU SER THR TYR ILE PRO ARG MET SER ALA PRO SEQRES 18 B 252 SER LEU ASN THR SER TYR GLN GLN THR GLU TRP TYR LYS SEQRES 19 B 252 VAL SER GLY TRP ALA ASP THR GLY TRP TYR LYS ASN HIS SEQRES 20 B 252 HIS HIS HIS HIS HIS HET NA A 401 1 HET NA A 402 1 HET NA A 403 1 HET NA B 401 1 HET NA B 402 1 HET NA B 403 1 HET NA B 404 1 HET NA B 405 1 HET CL B 406 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 NA 8(NA 1+) FORMUL 11 CL CL 1- FORMUL 12 HOH *50(H2 O) HELIX 1 AA1 LEU A 45 ARG A 61 1 17 HELIX 2 AA2 ASP A 108 TYR A 123 1 16 HELIX 3 AA3 ASP B 158 LEU B 166 1 9 HELIX 4 AA4 ALA B 184 LEU B 191 1 8 HELIX 5 AA5 PRO B 211 PHE B 220 1 10 HELIX 6 AA6 ASN B 224 ARG B 240 1 17 HELIX 7 AA7 GLU B 265 LYS B 275 1 11 HELIX 8 AA8 VAL B 276 ILE B 281 1 6 HELIX 9 AA9 LEU B 307 THR B 315 1 9 HELIX 10 AB1 ASN B 318 LYS B 330 1 13 HELIX 11 AB2 ALA B 367 GLN B 375 1 9 HELIX 12 AB3 THR B 377 GLY B 384 1 8 HELIX 13 AB4 TRP B 385 THR B 388 5 4 SHEET 1 AA1 9 VAL A 93 ASN A 100 0 SHEET 2 AA1 9 ARG A 81 LYS A 87 -1 N GLY A 86 O VAL A 94 SHEET 3 AA1 9 GLY A 68 ASP A 75 -1 N VAL A 72 O ILE A 83 SHEET 4 AA1 9 ARG A 33 ILE A 40 1 N ARG A 33 O ASN A 69 SHEET 5 AA1 9 LYS A 127 TRP A 133 1 O VAL A 131 N TYR A 38 SHEET 6 AA1 9 LEU B 172 ASP B 178 1 O PHE B 176 N PHE A 132 SHEET 7 AA1 9 GLY B 195 SER B 200 1 O TYR B 197 N LEU B 175 SHEET 8 AA1 9 SER B 257 LYS B 262 -1 O GLY B 259 N SER B 200 SHEET 9 AA1 9 MET B 332 SER B 337 -1 O TYR B 334 N VAL B 260 SHEET 1 AA2 2 PHE B 149 ASP B 152 0 SHEET 2 AA2 2 ASN B 155 MET B 157 -1 O ASN B 155 N ASP B 152 SHEET 1 AA3 2 TYR B 305 ASP B 306 0 SHEET 2 AA3 2 SER B 359 THR B 360 -1 O THR B 360 N TYR B 305 SHEET 1 AA4 2 ARG B 340 SER B 343 0 SHEET 2 AA4 2 GLY B 347 THR B 350 -1 O PHE B 349 N ASN B 341 LINK OE1 GLN A 42 NA NA A 401 1555 1555 2.42 LINK OE1 GLN A 42 NA NA A 402 1555 1555 2.45 LINK OD1 ASP A 52 NA NA A 403 1555 1555 2.44 LINK OE1 GLU A 55 NA NA A 403 1555 1555 2.49 LINK OE2 GLU A 55 NA NA A 403 1555 1555 2.96 LINK OD2 ASP A 75 NA NA A 401 1555 1555 2.63 LINK OD1 ASP A 75 NA NA A 402 1555 1555 2.44 LINK O ASP A 76 NA NA A 402 1555 1555 2.46 LINK O SER A 78 NA NA A 402 1555 1555 2.84 LINK OE1 GLU A 103 NA NA A 402 1555 1555 3.16 LINK OE2 GLU A 103 NA NA A 402 1555 1555 2.68 LINK O GLN A 104 NA NA A 401 1555 1555 2.31 LINK NA NA A 401 OD1 ASP B 152 1555 1555 2.51 LINK NA NA A 401 OD2 ASP B 152 1555 1555 2.62 LINK NA NA A 403 O HOH A 504 1555 1555 2.55 LINK NA NA A 403 O PRO B 208 1555 1555 2.34 LINK NA NA A 403 O ALA B 210 1555 1555 2.58 LINK O PHE B 181 NA NA B 405 1555 1555 2.68 LINK O PRO B 202 NA NA B 405 1555 1555 2.64 LINK O TYR B 237 NA NA B 401 1555 1555 2.96 LINK O TRP B 252 NA NA B 401 1555 1555 2.46 LINK OE1 GLU B 265 NA NA B 403 1555 1555 2.93 LINK OD1AASN B 268 NA NA B 403 1555 1555 2.55 LINK O GLY B 291 NA NA B 404 1555 1555 2.52 LINK O ALA B 327 NA NA B 403 1555 1555 2.59 LINK OD1 ASP B 354 NA NA B 404 1555 1555 2.70 LINK OG SER B 359 NA NA B 405 1555 1555 2.70 LINK OG1 THR B 360 NA NA B 402 1555 1555 2.70 LINK OH TYR B 374 NA NA B 402 1555 1555 2.76 SITE 1 AC1 5 GLN A 42 ASP A 75 GLU A 103 GLN A 104 SITE 2 AC1 5 ASP B 152 SITE 1 AC2 5 GLN A 42 ASP A 75 ASP A 76 SER A 78 SITE 2 AC2 5 GLU A 103 SITE 1 AC3 5 ASP A 52 GLU A 55 HOH A 504 PRO B 208 SITE 2 AC3 5 ALA B 210 SITE 1 AC4 7 TYR B 237 ARG B 240 TYR B 241 TRP B 252 SITE 2 AC4 7 THR B 253 GLY B 254 GLY B 255 SITE 1 AC5 4 THR B 360 TYR B 374 TRP B 379 TRP B 385 SITE 1 AC6 3 GLU B 265 ASN B 268 ALA B 327 SITE 1 AC7 5 GLY B 291 MET B 293 ARG B 309 ASN B 352 SITE 2 AC7 5 ASP B 354 SITE 1 AC8 4 PHE B 181 PRO B 202 TYR B 304 SER B 359 SITE 1 AC9 2 CYS B 294 ARG B 297 CRYST1 124.320 48.900 60.880 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016426 0.00000