HEADER OXIDOREDUCTASE 25-SEP-15 5DYP TITLE CRYSTAL STRUCTURE OF ASP251GLY/GLN307HIS MUTANT OF CYTOCHROME P450 BM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450/NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CYTOCHROME P450(BM-3),CYTOCHROME P450BM-3; COMPND 5 EC: 1.14.14.1,1.6.2.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 GENE: CYP102A1, CYP102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME P450, RANDOM MUTAGENESIS, DRUG METABOLISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.DI NARDO,V.DELL'ANGELO,G.GILARDI REVDAT 3 10-JAN-24 5DYP 1 REMARK REVDAT 2 22-JUN-16 5DYP 1 JRNL REVDAT 1 20-JAN-16 5DYP 0 JRNL AUTH G.DI NARDO,V.DELL'ANGELO,G.CATUCCI,S.J.SADEGHI,G.GILARDI JRNL TITL SUBTLE STRUCTURAL CHANGES IN THE ASP251GLY/GLN307HIS P450 JRNL TITL 2 BM3 MUTANT RESPONSIBLE FOR NEW ACTIVITY TOWARD DICLOFENAC, JRNL TITL 3 TOLBUTAMIDE AND IBUPROFEN. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 602 106 2016 JRNL REFN ESSN 1096-0384 JRNL PMID 26718083 JRNL DOI 10.1016/J.ABB.2015.12.005 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 41824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0030 - 5.9153 0.95 2743 141 0.1801 0.2106 REMARK 3 2 5.9153 - 4.6966 0.97 2653 144 0.1880 0.1913 REMARK 3 3 4.6966 - 4.1033 0.97 2664 126 0.1707 0.2047 REMARK 3 4 4.1033 - 3.7283 0.97 2633 151 0.1899 0.2177 REMARK 3 5 3.7283 - 3.4611 0.98 2634 140 0.2193 0.2866 REMARK 3 6 3.4611 - 3.2571 0.99 2646 132 0.2423 0.2830 REMARK 3 7 3.2571 - 3.0941 0.99 2637 149 0.2572 0.3497 REMARK 3 8 3.0941 - 2.9594 0.99 2637 135 0.2705 0.2565 REMARK 3 9 2.9594 - 2.8455 0.99 2675 120 0.2780 0.3700 REMARK 3 10 2.8455 - 2.7473 0.99 2640 131 0.2791 0.3230 REMARK 3 11 2.7473 - 2.6614 0.99 2630 142 0.2917 0.3418 REMARK 3 12 2.6614 - 2.5853 0.99 2637 144 0.2977 0.3199 REMARK 3 13 2.5853 - 2.5173 0.99 2626 146 0.2977 0.3399 REMARK 3 14 2.5173 - 2.4559 1.00 2654 120 0.3066 0.4024 REMARK 3 15 2.4559 - 2.4000 0.99 2644 150 0.3123 0.3489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7443 REMARK 3 ANGLE : 1.228 10079 REMARK 3 CHIRALITY : 0.045 1078 REMARK 3 PLANARITY : 0.006 1301 REMARK 3 DIHEDRAL : 14.857 2797 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4923 6.1506 3.2966 REMARK 3 T TENSOR REMARK 3 T11: 0.6080 T22: 0.7687 REMARK 3 T33: 0.4452 T12: -0.1295 REMARK 3 T13: -0.1216 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.3653 L22: 5.5911 REMARK 3 L33: 0.7336 L12: 1.3401 REMARK 3 L13: -0.6855 L23: -0.8027 REMARK 3 S TENSOR REMARK 3 S11: 0.1480 S12: -0.6654 S13: -0.1237 REMARK 3 S21: 0.3821 S22: 0.0977 S23: -0.2187 REMARK 3 S31: 0.5184 S32: 0.1975 S33: -0.1916 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6421 20.3354 -19.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.2541 T22: 0.5294 REMARK 3 T33: 0.5839 T12: -0.1009 REMARK 3 T13: 0.0534 T23: -0.1767 REMARK 3 L TENSOR REMARK 3 L11: 2.7458 L22: 1.5031 REMARK 3 L33: 5.1658 L12: -0.4848 REMARK 3 L13: 2.2242 L23: -0.0496 REMARK 3 S TENSOR REMARK 3 S11: 0.4275 S12: 0.1943 S13: -0.1123 REMARK 3 S21: -0.0418 S22: 0.1034 S23: -0.5256 REMARK 3 S31: -0.1034 S32: 0.7267 S33: -0.3939 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5105 7.9723 -28.8295 REMARK 3 T TENSOR REMARK 3 T11: 1.2136 T22: 1.1947 REMARK 3 T33: 1.3079 T12: 0.0283 REMARK 3 T13: -0.3307 T23: -0.3510 REMARK 3 L TENSOR REMARK 3 L11: 4.4655 L22: 0.7042 REMARK 3 L33: 6.1688 L12: -1.3555 REMARK 3 L13: 3.5252 L23: -0.2031 REMARK 3 S TENSOR REMARK 3 S11: 1.4762 S12: -0.2244 S13: -1.6500 REMARK 3 S21: 0.0079 S22: 0.1549 S23: -0.5053 REMARK 3 S31: 2.6412 S32: 1.0403 S33: -1.0582 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5871 24.9687 -15.1800 REMARK 3 T TENSOR REMARK 3 T11: 0.2816 T22: 0.4874 REMARK 3 T33: 0.4670 T12: -0.0884 REMARK 3 T13: 0.1121 T23: -0.1933 REMARK 3 L TENSOR REMARK 3 L11: 2.5905 L22: 1.9168 REMARK 3 L33: 4.4987 L12: 0.0774 REMARK 3 L13: 2.0140 L23: 0.2887 REMARK 3 S TENSOR REMARK 3 S11: 0.2138 S12: -0.1041 S13: 0.2259 REMARK 3 S21: 0.0140 S22: 0.0657 S23: -0.2631 REMARK 3 S31: -0.3495 S32: 0.3028 S33: -0.2016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9798 0.0429 -76.2341 REMARK 3 T TENSOR REMARK 3 T11: 0.8758 T22: 0.3757 REMARK 3 T33: 0.6713 T12: -0.1434 REMARK 3 T13: 0.2390 T23: -0.1128 REMARK 3 L TENSOR REMARK 3 L11: 3.6406 L22: 1.5866 REMARK 3 L33: 5.1223 L12: 1.3780 REMARK 3 L13: 0.8094 L23: 1.7346 REMARK 3 S TENSOR REMARK 3 S11: -0.3878 S12: 0.5183 S13: -0.8783 REMARK 3 S21: -0.8192 S22: 0.2912 S23: -0.4487 REMARK 3 S31: -0.2175 S32: 0.1712 S33: 0.1089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 94 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6212 17.2622 -55.6097 REMARK 3 T TENSOR REMARK 3 T11: 0.7792 T22: 0.3389 REMARK 3 T33: 0.4270 T12: 0.0201 REMARK 3 T13: 0.0839 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 5.9224 L22: 2.2621 REMARK 3 L33: 5.4020 L12: 1.2180 REMARK 3 L13: 1.8326 L23: 1.9630 REMARK 3 S TENSOR REMARK 3 S11: -0.0962 S12: -0.2078 S13: -0.2828 REMARK 3 S21: -0.7008 S22: 0.1006 S23: 0.1155 REMARK 3 S31: -0.8551 S32: -0.1511 S33: -0.0793 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 312 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3347 14.3927 -70.7694 REMARK 3 T TENSOR REMARK 3 T11: 1.0358 T22: 0.6392 REMARK 3 T33: 0.5233 T12: -0.3652 REMARK 3 T13: 0.3062 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 1.9301 L22: 2.2181 REMARK 3 L33: 3.7910 L12: 0.5529 REMARK 3 L13: 0.9659 L23: 1.9000 REMARK 3 S TENSOR REMARK 3 S11: -0.4183 S12: 0.3647 S13: -0.1812 REMARK 3 S21: -0.8653 S22: 0.5925 S23: -0.4668 REMARK 3 S31: -1.2163 S32: 0.8475 S33: -0.1082 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41881 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1JPZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 100 MM CACODYLIC ACID PH REMARK 280 5.5-6.8, 100-160 MM MGCL2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.56700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.47350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.22400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.47350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.56700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.22400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 GLN A 189 REMARK 465 ARG A 190 REMARK 465 ALA A 191 REMARK 465 ASN A 192 REMARK 465 PRO A 193 REMARK 465 ASP A 194 REMARK 465 ASP A 195 REMARK 465 PRO A 196 REMARK 465 ALA A 197 REMARK 465 TYR A 198 REMARK 465 ASP A 199 REMARK 465 GLU A 200 REMARK 465 GLY A 227 REMARK 465 GLU A 228 REMARK 465 GLY A 456 REMARK 465 GLY A 457 REMARK 465 ILE A 458 REMARK 465 PRO A 459 REMARK 465 SER A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 THR A 463 REMARK 465 GLU A 464 REMARK 465 GLN A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 469 REMARK 465 VAL A 470 REMARK 465 ARG C 190 REMARK 465 ALA C 191 REMARK 465 ASN C 192 REMARK 465 PRO C 193 REMARK 465 GLY C 227 REMARK 465 GLU C 228 REMARK 465 GLY C 457 REMARK 465 ILE C 458 REMARK 465 PRO C 459 REMARK 465 SER C 460 REMARK 465 PRO C 461 REMARK 465 SER C 462 REMARK 465 THR C 463 REMARK 465 GLU C 464 REMARK 465 GLN C 465 REMARK 465 SER C 466 REMARK 465 ALA C 467 REMARK 465 LYS C 468 REMARK 465 LYS C 469 REMARK 465 VAL C 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 113 O HOH A 601 1.81 REMARK 500 O ASP C 84 O HOH C 601 1.81 REMARK 500 OE1 GLN A 125 O HOH A 602 1.87 REMARK 500 O ILE A 401 O HOH A 603 1.90 REMARK 500 O HOH A 689 O HOH A 692 1.95 REMARK 500 O LYS C 349 O HOH C 602 1.96 REMARK 500 O ILE C 219 O HOH C 603 2.10 REMARK 500 OE2 GLU C 348 O HOH C 604 2.10 REMARK 500 NZ LYS C 440 O HOH C 605 2.11 REMARK 500 OD2 ASP C 84 O HOH C 606 2.12 REMARK 500 O HOH A 683 O HOH A 694 2.13 REMARK 500 O ALA C 389 O HOH C 607 2.15 REMARK 500 O HOH A 681 O HOH A 697 2.15 REMARK 500 O HOH A 687 O HOH A 694 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 210 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 PRO C 243 C - N - CA ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO C 376 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 69.27 -118.17 REMARK 500 LYS A 15 -125.23 53.80 REMARK 500 ASP A 84 41.54 -99.10 REMARK 500 LYS A 202 -123.44 -32.65 REMARK 500 ASP A 232 -164.25 -116.80 REMARK 500 HIS A 266 -43.92 -151.32 REMARK 500 GLU A 344 -41.17 -134.72 REMARK 500 LEU A 437 -24.78 67.60 REMARK 500 PHE C 11 67.72 -110.61 REMARK 500 LYS C 15 -124.57 56.57 REMARK 500 PRO C 18 -8.42 -59.91 REMARK 500 ASP C 84 40.93 -99.68 REMARK 500 ASP C 232 -162.80 -120.66 REMARK 500 PRO C 243 30.73 -89.76 REMARK 500 HIS C 266 -42.40 -152.81 REMARK 500 GLU C 344 -39.85 -134.77 REMARK 500 ASP C 370 57.60 -90.86 REMARK 500 THR C 436 59.76 -148.08 REMARK 500 LEU C 437 -22.86 66.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 102.7 REMARK 620 3 HEM A 501 NB 88.2 89.6 REMARK 620 4 HEM A 501 NC 85.9 171.2 89.2 REMARK 620 5 HEM A 501 ND 100.2 89.4 171.5 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 400 SG REMARK 620 2 HEM C 501 NA 100.6 REMARK 620 3 HEM C 501 NB 91.4 89.0 REMARK 620 4 HEM C 501 NC 83.0 176.3 89.9 REMARK 620 5 HEM C 501 ND 91.0 89.3 177.2 91.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 501 DBREF 5DYP A 1 470 UNP P14779 CPXB_BACME 2 471 DBREF 5DYP C 1 470 UNP P14779 CPXB_BACME 2 471 SEQADV 5DYP GLY A 251 UNP P14779 ASP 252 ENGINEERED MUTATION SEQADV 5DYP HIS A 307 UNP P14779 GLN 308 ENGINEERED MUTATION SEQADV 5DYP GLY C 251 UNP P14779 ASP 252 ENGINEERED MUTATION SEQADV 5DYP HIS C 307 UNP P14779 GLN 308 ENGINEERED MUTATION SEQRES 1 A 470 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 A 470 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 A 470 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 A 470 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 A 470 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 A 470 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 A 470 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 A 470 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 A 470 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 A 470 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 A 470 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 A 470 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 A 470 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 A 470 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 A 470 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 A 470 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 A 470 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 A 470 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 A 470 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 A 470 PRO LEU ASP GLY GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 A 470 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 A 470 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 A 470 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 A 470 ASP PRO VAL PRO SER TYR LYS HIS VAL LYS GLN LEU LYS SEQRES 25 A 470 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 A 470 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 A 470 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 A 470 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 A 470 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 A 470 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 A 470 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 A 470 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 A 470 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 A 470 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 A 470 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 A 470 GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA LYS SEQRES 37 A 470 LYS VAL SEQRES 1 C 470 THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY GLU SEQRES 2 C 470 LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO VAL SEQRES 3 C 470 GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU ILE SEQRES 4 C 470 PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR LEU SEQRES 5 C 470 SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SER SEQRES 6 C 470 ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE VAL SEQRES 7 C 470 ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP THR SEQRES 8 C 470 HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU LEU SEQRES 9 C 470 PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS ALA SEQRES 10 C 470 MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS TRP SEQRES 11 C 470 GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO GLU SEQRES 12 C 470 ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU CYS SEQRES 13 C 470 GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP GLN SEQRES 14 C 470 PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU ASP SEQRES 15 C 470 GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP ASP SEQRES 16 C 470 PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU ASP SEQRES 17 C 470 ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE ALA SEQRES 18 C 470 ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU LEU SEQRES 19 C 470 THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY GLU SEQRES 20 C 470 PRO LEU ASP GLY GLU ASN ILE ARG TYR GLN ILE ILE THR SEQRES 21 C 470 PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU LEU SEQRES 22 C 470 SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS VAL SEQRES 23 C 470 LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU VAL SEQRES 24 C 470 ASP PRO VAL PRO SER TYR LYS HIS VAL LYS GLN LEU LYS SEQRES 25 C 470 TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU TRP SEQRES 26 C 470 PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU ASP SEQRES 27 C 470 THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY ASP SEQRES 28 C 470 GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP LYS SEQRES 29 C 470 THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO GLU SEQRES 30 C 470 ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA PHE SEQRES 31 C 470 LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY GLN SEQRES 32 C 470 GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY MET SEQRES 33 C 470 MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN TYR SEQRES 34 C 470 GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO GLU SEQRES 35 C 470 GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO LEU SEQRES 36 C 470 GLY GLY ILE PRO SER PRO SER THR GLU GLN SER ALA LYS SEQRES 37 C 470 LYS VAL HET HEM A 501 43 HET HEM C 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *148(H2 O) HELIX 1 AA1 PHE A 11 LYS A 15 5 5 HELIX 2 AA2 ASN A 16 ASN A 21 5 6 HELIX 3 AA3 LYS A 24 GLY A 37 1 14 HELIX 4 AA4 SER A 54 CYS A 62 1 9 HELIX 5 AA5 SER A 72 GLY A 83 1 12 HELIX 6 AA6 GLU A 93 LEU A 104 1 12 HELIX 7 AA7 PRO A 105 PHE A 107 5 3 HELIX 8 AA8 SER A 108 LYS A 113 1 6 HELIX 9 AA9 TYR A 115 ARG A 132 1 18 HELIX 10 AB1 VAL A 141 ASN A 159 1 19 HELIX 11 AB2 ASN A 163 ARG A 167 5 5 HELIX 12 AB3 HIS A 171 LYS A 187 1 17 HELIX 13 AB4 GLN A 204 SER A 226 1 23 HELIX 14 AB5 ASP A 232 GLY A 240 1 9 HELIX 15 AB6 ASP A 250 GLY A 265 1 16 HELIX 16 AB7 HIS A 266 ASN A 283 1 18 HELIX 17 AB8 ASN A 283 LEU A 298 1 16 HELIX 18 AB9 SER A 304 LYS A 309 1 6 HELIX 19 AC1 LEU A 311 TRP A 325 1 15 HELIX 20 AC2 ILE A 357 HIS A 361 1 5 HELIX 21 AC3 ASP A 363 GLY A 368 1 6 HELIX 22 AC4 ARG A 375 GLU A 380 5 6 HELIX 23 AC5 ASN A 395 ALA A 399 5 5 HELIX 24 AC6 GLY A 402 HIS A 420 1 19 HELIX 25 AC7 PHE C 11 LYS C 15 5 5 HELIX 26 AC8 ASN C 16 ASN C 21 5 6 HELIX 27 AC9 LYS C 24 GLY C 37 1 14 HELIX 28 AD1 SER C 54 CYS C 62 1 9 HELIX 29 AD2 SER C 72 GLY C 83 1 12 HELIX 30 AD3 GLU C 93 LEU C 104 1 12 HELIX 31 AD4 PRO C 105 SER C 108 5 4 HELIX 32 AD5 ALA C 111 ARG C 132 1 22 HELIX 33 AD6 VAL C 141 ASN C 159 1 19 HELIX 34 AD7 ASN C 163 ARG C 167 5 5 HELIX 35 AD8 HIS C 171 LEU C 188 1 18 HELIX 36 AD9 PRO C 196 SER C 226 1 31 HELIX 37 AE1 ASP C 232 GLY C 240 1 9 HELIX 38 AE2 ASP C 250 GLY C 265 1 16 HELIX 39 AE3 HIS C 266 ASN C 283 1 18 HELIX 40 AE4 ASN C 283 LEU C 298 1 16 HELIX 41 AE5 SER C 304 LYS C 309 1 6 HELIX 42 AE6 LEU C 311 TRP C 325 1 15 HELIX 43 AE7 ILE C 357 HIS C 361 1 5 HELIX 44 AE8 ASP C 363 GLY C 368 1 6 HELIX 45 AE9 ARG C 375 GLU C 380 5 6 HELIX 46 AF1 ASN C 395 ALA C 399 5 5 HELIX 47 AF2 GLY C 402 HIS C 420 1 19 SHEET 1 AA1 5 ILE A 39 ALA A 44 0 SHEET 2 AA1 5 ARG A 47 LEU A 52 -1 O THR A 49 N PHE A 42 SHEET 3 AA1 5 GLU A 352 LEU A 356 1 O MET A 354 N LEU A 52 SHEET 4 AA1 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 AA1 5 PHE A 67 LYS A 69 -1 N ASP A 68 O TYR A 334 SHEET 1 AA2 3 ILE A 139 GLU A 140 0 SHEET 2 AA2 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 AA2 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 AA3 2 THR A 339 LEU A 341 0 SHEET 2 AA3 2 TYR A 345 LEU A 347 -1 O LEU A 347 N THR A 339 SHEET 1 AA4 2 ILE A 433 GLU A 435 0 SHEET 2 AA4 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 AA5 5 ILE C 39 ALA C 44 0 SHEET 2 AA5 5 ARG C 47 LEU C 52 -1 O THR C 49 N PHE C 42 SHEET 3 AA5 5 GLU C 352 LEU C 356 1 O MET C 354 N ARG C 50 SHEET 4 AA5 5 ALA C 330 ALA C 335 -1 N PHE C 331 O VAL C 355 SHEET 5 AA5 5 PHE C 67 LYS C 69 -1 N ASP C 68 O TYR C 334 SHEET 1 AA6 3 ILE C 139 GLU C 140 0 SHEET 2 AA6 3 VAL C 445 SER C 450 -1 O VAL C 446 N ILE C 139 SHEET 3 AA6 3 PHE C 421 GLU C 424 -1 N GLU C 424 O LYS C 447 SHEET 1 AA7 2 THR C 339 LEU C 341 0 SHEET 2 AA7 2 TYR C 345 LEU C 347 -1 O LEU C 347 N THR C 339 SHEET 1 AA8 2 ILE C 433 GLU C 435 0 SHEET 2 AA8 2 LEU C 439 PRO C 441 -1 O LYS C 440 N LYS C 434 LINK SG CYS A 400 FE HEM A 501 1555 1555 2.30 LINK SG CYS C 400 FE HEM C 501 1555 1555 2.30 SITE 1 AC1 25 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 25 ILE A 153 ALA A 264 GLY A 265 THR A 268 SITE 3 AC1 25 THR A 269 THR A 327 ALA A 328 PHE A 331 SITE 4 AC1 25 PRO A 392 PHE A 393 GLY A 394 ARG A 398 SITE 5 AC1 25 ALA A 399 CYS A 400 ILE A 401 GLY A 402 SITE 6 AC1 25 ALA A 406 HOH A 616 HOH A 635 HOH A 637 SITE 7 AC1 25 HOH A 670 SITE 1 AC2 24 LYS C 69 LEU C 86 PHE C 87 TRP C 96 SITE 2 AC2 24 ALA C 264 GLY C 265 THR C 268 THR C 269 SITE 3 AC2 24 LEU C 272 THR C 327 ALA C 328 PHE C 331 SITE 4 AC2 24 PRO C 392 PHE C 393 GLY C 394 ARG C 398 SITE 5 AC2 24 CYS C 400 ILE C 401 GLY C 402 ALA C 406 SITE 6 AC2 24 HOH C 613 HOH C 616 HOH C 620 HOH C 640 CRYST1 61.134 118.448 146.947 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006805 0.00000