HEADER TRANSCRIPTION 25-SEP-15 5DZ0 TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE CYCLOFENIL DERIVATIVE 4,4'-[(4-METHYLCYCLOHEXYLIDENE) TITLE 3 METHANEDIYL]DIPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DZ0 1 REMARK REVDAT 1 04-MAY-16 5DZ0 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1690 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 21584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7997 - 5.3962 0.98 1492 147 0.1762 0.2084 REMARK 3 2 5.3962 - 4.2841 1.00 1496 149 0.1576 0.2111 REMARK 3 3 4.2841 - 3.7429 0.98 1461 141 0.1679 0.2035 REMARK 3 4 3.7429 - 3.4008 0.99 1448 136 0.1875 0.2301 REMARK 3 5 3.4008 - 3.1571 0.98 1456 140 0.2081 0.2429 REMARK 3 6 3.1571 - 2.9710 0.98 1444 151 0.2107 0.2632 REMARK 3 7 2.9710 - 2.8222 0.96 1422 137 0.2123 0.2677 REMARK 3 8 2.8222 - 2.6994 0.93 1359 133 0.2288 0.2367 REMARK 3 9 2.6994 - 2.5955 0.95 1412 126 0.2258 0.2666 REMARK 3 10 2.5955 - 2.5059 0.94 1401 130 0.2270 0.2776 REMARK 3 11 2.5059 - 2.4276 0.93 1365 130 0.2214 0.2663 REMARK 3 12 2.4276 - 2.3582 0.93 1337 140 0.2248 0.2578 REMARK 3 13 2.3582 - 2.2961 0.90 1339 125 0.2333 0.2525 REMARK 3 14 2.2961 - 2.2401 0.85 1238 129 0.2492 0.2972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3990 REMARK 3 ANGLE : 0.668 5399 REMARK 3 CHIRALITY : 0.024 638 REMARK 3 PLANARITY : 0.002 671 REMARK 3 DIHEDRAL : 12.800 1467 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3191 19.7316 -4.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.4380 T22: 0.4861 REMARK 3 T33: 0.4733 T12: 0.0057 REMARK 3 T13: -0.0529 T23: 0.1158 REMARK 3 L TENSOR REMARK 3 L11: 4.2503 L22: 8.2780 REMARK 3 L33: 2.7388 L12: -2.6748 REMARK 3 L13: 2.2168 L23: -1.2348 REMARK 3 S TENSOR REMARK 3 S11: -0.1387 S12: 0.2405 S13: 0.8482 REMARK 3 S21: -0.2617 S22: 0.0642 S23: -0.2660 REMARK 3 S31: -0.3523 S32: -0.2209 S33: 0.1478 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1603 -6.6278 -6.1972 REMARK 3 T TENSOR REMARK 3 T11: 0.4807 T22: 0.5445 REMARK 3 T33: 0.4657 T12: -0.0044 REMARK 3 T13: 0.0333 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 2.8046 L22: 2.0873 REMARK 3 L33: 5.1805 L12: -1.6538 REMARK 3 L13: 1.2146 L23: -4.5407 REMARK 3 S TENSOR REMARK 3 S11: 0.3556 S12: 0.4385 S13: -0.0665 REMARK 3 S21: -1.2156 S22: -0.6569 S23: -1.2429 REMARK 3 S31: 1.1479 S32: 0.3980 S33: 0.3073 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2931 5.2446 1.2555 REMARK 3 T TENSOR REMARK 3 T11: 0.2257 T22: 0.2981 REMARK 3 T33: 0.2065 T12: -0.0139 REMARK 3 T13: -0.0154 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.4505 L22: 5.6274 REMARK 3 L33: 2.5981 L12: -0.3006 REMARK 3 L13: -0.8211 L23: 1.3765 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.1121 S13: 0.0188 REMARK 3 S21: -0.0055 S22: 0.0663 S23: -0.2304 REMARK 3 S31: 0.0320 S32: 0.1153 S33: -0.0304 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0806 -10.5210 6.4259 REMARK 3 T TENSOR REMARK 3 T11: 0.5204 T22: 0.2930 REMARK 3 T33: 0.4637 T12: 0.0108 REMARK 3 T13: 0.0775 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 6.1934 L22: 4.7738 REMARK 3 L33: 3.3775 L12: -1.0833 REMARK 3 L13: -1.3307 L23: 0.8738 REMARK 3 S TENSOR REMARK 3 S11: -0.2722 S12: -0.0113 S13: -0.9470 REMARK 3 S21: 0.6053 S22: 0.1066 S23: -0.0783 REMARK 3 S31: 0.4952 S32: 0.2265 S33: 0.1335 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5459 9.9157 4.8924 REMARK 3 T TENSOR REMARK 3 T11: 0.3206 T22: 0.3291 REMARK 3 T33: 0.3289 T12: 0.0506 REMARK 3 T13: 0.0053 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 6.0998 L22: 2.2021 REMARK 3 L33: 3.8736 L12: 1.1395 REMARK 3 L13: -0.4452 L23: 0.5164 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0290 S13: 0.4772 REMARK 3 S21: -0.1862 S22: 0.0361 S23: 0.0642 REMARK 3 S31: -0.5581 S32: -0.0472 S33: -0.0544 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 472 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6397 7.3141 8.3413 REMARK 3 T TENSOR REMARK 3 T11: 0.3545 T22: 0.2451 REMARK 3 T33: 0.1797 T12: -0.0133 REMARK 3 T13: 0.0494 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 5.2984 L22: 2.3934 REMARK 3 L33: 1.7429 L12: -0.8500 REMARK 3 L13: 0.1476 L23: -0.0500 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: -0.2789 S13: 0.2340 REMARK 3 S21: 0.2327 S22: -0.0765 S23: 0.0787 REMARK 3 S31: 0.0607 S32: -0.0042 S33: -0.0152 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 532 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6458 4.9494 8.5902 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.4203 REMARK 3 T33: 0.3571 T12: 0.0270 REMARK 3 T13: -0.0778 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 9.3000 L22: 8.2909 REMARK 3 L33: 7.4753 L12: -1.7974 REMARK 3 L13: -3.8528 L23: 4.6112 REMARK 3 S TENSOR REMARK 3 S11: -0.3633 S12: -0.4303 S13: 0.1378 REMARK 3 S21: 0.9469 S22: 0.4844 S23: -0.7865 REMARK 3 S31: 0.9382 S32: 0.2634 S33: -0.0711 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4982 6.2860 35.6366 REMARK 3 T TENSOR REMARK 3 T11: 0.2659 T22: 0.4043 REMARK 3 T33: 0.3467 T12: 0.0384 REMARK 3 T13: 0.0566 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 6.1320 L22: 1.9432 REMARK 3 L33: 4.2070 L12: 1.8671 REMARK 3 L13: 3.7265 L23: 0.8519 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: 0.0172 S13: -0.0848 REMARK 3 S21: 0.1094 S22: 0.0154 S23: 0.1971 REMARK 3 S31: 0.0518 S32: -0.3218 S33: -0.1159 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2588 -0.6708 31.5939 REMARK 3 T TENSOR REMARK 3 T11: 0.3401 T22: 0.3015 REMARK 3 T33: 0.2602 T12: 0.0060 REMARK 3 T13: 0.0525 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.8350 L22: 6.7094 REMARK 3 L33: 5.1918 L12: 0.8290 REMARK 3 L13: 1.0731 L23: 2.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: -0.3072 S13: -0.3138 REMARK 3 S21: 0.3647 S22: -0.0626 S23: 0.1660 REMARK 3 S31: 0.5650 S32: -0.0327 S33: -0.0024 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3803 17.3151 35.0524 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.4208 REMARK 3 T33: 0.4327 T12: -0.0680 REMARK 3 T13: -0.0442 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.3040 L22: 4.9586 REMARK 3 L33: 4.3323 L12: -1.2739 REMARK 3 L13: -0.5402 L23: 0.3978 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.2424 S13: 0.6879 REMARK 3 S21: 0.0251 S22: -0.2062 S23: -0.7967 REMARK 3 S31: -1.0685 S32: 0.5255 S33: 0.1494 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 422 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9151 12.2477 24.0868 REMARK 3 T TENSOR REMARK 3 T11: 0.3034 T22: 0.2386 REMARK 3 T33: 0.2352 T12: 0.0278 REMARK 3 T13: 0.0340 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 4.8865 L22: 4.5024 REMARK 3 L33: 5.0895 L12: 2.5620 REMARK 3 L13: 0.4370 L23: -0.2657 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: 0.0955 S13: 0.3077 REMARK 3 S21: -0.1769 S22: -0.1088 S23: -0.0643 REMARK 3 S31: -0.4778 S32: -0.0229 S33: 0.0557 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2404 -12.3113 14.6929 REMARK 3 T TENSOR REMARK 3 T11: 0.8088 T22: 0.7463 REMARK 3 T33: 0.5226 T12: -0.1130 REMARK 3 T13: -0.0812 T23: 0.2154 REMARK 3 L TENSOR REMARK 3 L11: 5.6024 L22: 6.3570 REMARK 3 L33: 9.6557 L12: 0.5050 REMARK 3 L13: -1.1653 L23: 5.6478 REMARK 3 S TENSOR REMARK 3 S11: 0.3241 S12: -0.9252 S13: -0.3863 REMARK 3 S21: -2.1255 S22: -0.4765 S23: -0.1859 REMARK 3 S31: -0.7533 S32: 0.5252 S33: -0.1072 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 471 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8597 6.2361 18.3253 REMARK 3 T TENSOR REMARK 3 T11: 0.2818 T22: 0.2888 REMARK 3 T33: 0.2141 T12: -0.0129 REMARK 3 T13: 0.0801 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 3.2235 L22: 3.4469 REMARK 3 L33: 4.6184 L12: -1.0949 REMARK 3 L13: 1.2712 L23: -0.9936 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.1125 S13: -0.1788 REMARK 3 S21: -0.1027 S22: -0.1495 S23: 0.1506 REMARK 3 S31: 0.3404 S32: -0.1608 S33: 0.1682 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 531 THROUGH 549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7926 -5.4194 33.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.6946 T22: 0.5895 REMARK 3 T33: 0.7150 T12: 0.0859 REMARK 3 T13: -0.0225 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 5.3483 L22: 5.1817 REMARK 3 L33: 2.0335 L12: -1.1296 REMARK 3 L13: -1.7599 L23: 1.5726 REMARK 3 S TENSOR REMARK 3 S11: 0.2987 S12: -0.3965 S13: -0.3131 REMARK 3 S21: 0.4765 S22: 0.3858 S23: -1.2181 REMARK 3 S31: 0.9654 S32: 1.3510 S33: -0.6636 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 687 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6925 18.4588 1.9493 REMARK 3 T TENSOR REMARK 3 T11: 0.4575 T22: 0.5645 REMARK 3 T33: 0.7250 T12: -0.0505 REMARK 3 T13: 0.0168 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.0181 L22: 2.0350 REMARK 3 L33: 2.0062 L12: 3.8082 REMARK 3 L13: 4.5174 L23: 0.7002 REMARK 3 S TENSOR REMARK 3 S11: -0.2624 S12: -0.6107 S13: 0.8482 REMARK 3 S21: -0.2124 S22: -0.7782 S23: -1.5896 REMARK 3 S31: -0.8469 S32: 0.2398 S33: 0.8702 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 697 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3772 -13.3500 35.7107 REMARK 3 T TENSOR REMARK 3 T11: 0.7292 T22: 0.4795 REMARK 3 T33: 0.5877 T12: -0.0137 REMARK 3 T13: 0.0391 T23: 0.0992 REMARK 3 L TENSOR REMARK 3 L11: 2.0006 L22: 5.0658 REMARK 3 L33: 8.1013 L12: 0.8366 REMARK 3 L13: 3.1210 L23: -0.9048 REMARK 3 S TENSOR REMARK 3 S11: -0.1764 S12: -0.9539 S13: -1.7930 REMARK 3 S21: 0.5387 S22: 0.5453 S23: 0.3934 REMARK 3 S31: 1.3634 S32: -0.3283 S33: -0.2479 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22571 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2B1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 LYS B 416 REMARK 465 CYS B 417 REMARK 465 VAL B 418 REMARK 465 GLU B 419 REMARK 465 GLY B 420 REMARK 465 THR B 460 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 GLU A 471 CG CD OE1 OE2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 ARG B 412 CG CD NE CZ NH1 NH2 REMARK 470 MET B 421 CG SD CE REMARK 470 VAL B 422 CG1 CG2 REMARK 470 MET B 437 CG SD CE REMARK 470 VAL B 458 CG1 CG2 REMARK 470 LEU B 466 CG CD1 CD2 REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ASN B 532 CG OD1 ND2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 549 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 351 OG SER A 537 2.09 REMARK 500 OE1 GLU A 542 O HOH A 1001 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 333 -92.14 -67.16 REMARK 500 THR A 334 91.86 24.19 REMARK 500 PHE A 337 -37.21 -131.26 REMARK 500 LEU A 408 80.14 -152.89 REMARK 500 ASP B 411 -155.69 -103.12 REMARK 500 ARG B 412 22.60 -69.36 REMARK 500 GLN B 414 119.78 145.32 REMARK 500 LYS B 467 -64.08 163.84 REMARK 500 PRO B 535 98.40 -63.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 466 LYS B 467 119.72 REMARK 500 LYS B 467 SER B 468 122.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K0 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5K0 B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DXR RELATED DB: PDB REMARK 900 5DXR CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE DBREF 5DZ0 A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DZ0 B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DZ0 C 686 699 PDB 5DZ0 5DZ0 686 699 DBREF 5DZ0 D 686 699 PDB 5DZ0 5DZ0 686 699 SEQADV 5DZ0 SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DZ0 SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5K0 A 900 22 HET 5K0 B 901 22 HETNAM 5K0 4,4'-[(4-METHYLCYCLOHEXYLIDENE)METHANEDIYL]DIPHENOL FORMUL 5 5K0 2(C20 H22 O2) FORMUL 7 HOH *121(H2 O) HELIX 1 AA1 SER A 305 LEU A 310 5 6 HELIX 2 AA2 THR A 311 GLU A 323 1 13 HELIX 3 AA3 SER A 338 LYS A 362 1 25 HELIX 4 AA4 THR A 371 SER A 395 1 25 HELIX 5 AA5 ARG A 412 LYS A 416 1 5 HELIX 6 AA6 GLY A 420 MET A 438 1 19 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 GLU A 471 ALA A 493 1 23 HELIX 9 AA9 THR A 496 ASN A 532 1 37 HELIX 10 AB1 SER A 537 ALA A 546 1 10 HELIX 11 AB2 LEU B 306 LEU B 310 5 5 HELIX 12 AB3 THR B 311 ALA B 322 1 12 HELIX 13 AB4 SER B 338 ARG B 363 1 26 HELIX 14 AB5 THR B 371 SER B 395 1 25 HELIX 15 AB6 VAL B 422 ASN B 439 1 18 HELIX 16 AB7 GLN B 441 SER B 456 1 16 HELIX 17 AB8 GLU B 470 ALA B 493 1 24 HELIX 18 AB9 THR B 496 LYS B 531 1 36 HELIX 19 AC1 SER B 537 ALA B 546 1 10 HELIX 20 AC2 LYS C 688 LEU C 694 1 7 HELIX 21 AC3 ILE D 689 ASP D 696 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LEU B 402 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 LEU B 410 -1 O LEU B 410 N LEU B 402 CISPEP 1 SER B 468 LEU B 469 0 4.53 SITE 1 AC1 10 MET A 343 LEU A 346 THR A 347 ALA A 350 SITE 2 AC1 10 GLU A 353 LEU A 387 ARG A 394 LEU A 525 SITE 3 AC1 10 LEU A 540 HOH A1029 SITE 1 AC2 11 LEU B 346 THR B 347 ALA B 350 GLU B 353 SITE 2 AC2 11 LEU B 387 ARG B 394 PHE B 425 LEU B 525 SITE 3 AC2 11 LEU B 536 LEU B 540 HOH B1023 CRYST1 54.084 81.000 58.005 90.00 109.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018490 0.000000 0.006722 0.00000 SCALE2 0.000000 0.012346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018344 0.00000