HEADER TRANSCRIPTION 25-SEP-15 5DZ3 TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE CYCLOFENIL DERIVATIVE 4,4'-{[4-(FLUOROMETHYL) TITLE 3 CYCLOHEXYLIDENE]METHANEDIYL}DIPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NUCLEAR RECEPTOR-INTERACTING PEPTIDE; COMPND 13 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG,Z.LIAO, AUTHOR 2 V.CAVETT,J.NOWAK,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN,O.ELEMENTO, AUTHOR 3 J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES REVDAT 2 27-SEP-23 5DZ3 1 REMARK REVDAT 1 04-MAY-16 5DZ3 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,Y.ZHENG,S.WANG,J.MIN,C.DONG, JRNL AUTH 2 Z.LIAO,J.NOWAK,N.J.WRIGHT,R.HOUTMAN,K.E.CARLSON,J.S.JOSAN, JRNL AUTH 3 O.ELEMENTO,J.A.KATZENELLENBOGEN,H.B.ZHOU,K.W.NETTLES JRNL TITL PREDICTIVE FEATURES OF LIGAND-SPECIFIC SIGNALING THROUGH THE JRNL TITL 2 ESTROGEN RECEPTOR. JRNL REF MOL.SYST.BIOL. V. 12 864 2016 JRNL REFN ESSN 1744-4292 JRNL PMID 27107013 JRNL DOI 10.15252/MSB.20156701 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 24355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7728 - 5.1755 0.99 1724 142 0.2037 0.2375 REMARK 3 2 5.1755 - 4.1088 0.99 1680 150 0.1748 0.2060 REMARK 3 3 4.1088 - 3.5896 0.98 1664 138 0.1728 0.1893 REMARK 3 4 3.5896 - 3.2615 0.99 1681 151 0.2010 0.2367 REMARK 3 5 3.2615 - 3.0278 0.98 1659 138 0.2076 0.2795 REMARK 3 6 3.0278 - 2.8493 0.98 1642 149 0.2065 0.2363 REMARK 3 7 2.8493 - 2.7066 0.94 1561 137 0.2251 0.2698 REMARK 3 8 2.7066 - 2.5888 0.96 1622 142 0.2160 0.2346 REMARK 3 9 2.5888 - 2.4892 0.96 1617 139 0.2287 0.2250 REMARK 3 10 2.4892 - 2.4033 0.96 1597 144 0.2205 0.2862 REMARK 3 11 2.4033 - 2.3281 0.93 1574 137 0.2340 0.2590 REMARK 3 12 2.3281 - 2.2616 0.93 1552 128 0.2320 0.2588 REMARK 3 13 2.2616 - 2.2021 0.90 1500 136 0.2320 0.2709 REMARK 3 14 2.2021 - 2.1483 0.80 1340 111 0.2414 0.2570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3921 REMARK 3 ANGLE : 0.542 5311 REMARK 3 CHIRALITY : 0.020 636 REMARK 3 PLANARITY : 0.002 656 REMARK 3 DIHEDRAL : 12.419 1432 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2340 8.0027 -0.6263 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.2996 REMARK 3 T33: 0.1756 T12: -0.0265 REMARK 3 T13: 0.0019 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 4.2262 L22: 3.6348 REMARK 3 L33: 1.9785 L12: -0.1728 REMARK 3 L13: 0.0794 L23: 0.4352 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.2376 S13: 0.0947 REMARK 3 S21: -0.1207 S22: 0.0188 S23: -0.1506 REMARK 3 S31: 0.0312 S32: 0.0532 S33: 0.0305 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2749 -3.3323 3.8742 REMARK 3 T TENSOR REMARK 3 T11: 0.3017 T22: 0.2582 REMARK 3 T33: 0.2520 T12: -0.0081 REMARK 3 T13: 0.0241 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 4.6476 L22: 4.2039 REMARK 3 L33: 1.7285 L12: -0.9146 REMARK 3 L13: -1.5337 L23: 0.2602 REMARK 3 S TENSOR REMARK 3 S11: -0.2586 S12: 0.0202 S13: -0.5928 REMARK 3 S21: 0.2495 S22: 0.0943 S23: 0.0808 REMARK 3 S31: 0.2965 S32: 0.0233 S33: 0.1070 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1488 6.7681 8.3068 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.2268 REMARK 3 T33: 0.1513 T12: -0.0069 REMARK 3 T13: 0.0166 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 4.8087 L22: 2.1328 REMARK 3 L33: 1.7404 L12: 0.0866 REMARK 3 L13: -0.5258 L23: 0.1106 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: -0.4085 S13: 0.0181 REMARK 3 S21: 0.1937 S22: -0.0406 S23: -0.0596 REMARK 3 S31: 0.1144 S32: 0.1671 S33: 0.0098 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9916 6.2805 35.3903 REMARK 3 T TENSOR REMARK 3 T11: 0.3140 T22: 0.3801 REMARK 3 T33: 0.3082 T12: -0.0151 REMARK 3 T13: 0.0959 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.4836 L22: 2.1817 REMARK 3 L33: 4.4566 L12: 0.4538 REMARK 3 L13: 1.9520 L23: 0.4968 REMARK 3 S TENSOR REMARK 3 S11: 0.2196 S12: -0.3388 S13: -0.1061 REMARK 3 S21: 0.0827 S22: -0.0428 S23: 0.0883 REMARK 3 S31: 0.0896 S32: -0.5315 S33: 0.0015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2281 -0.5209 31.5555 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.2441 REMARK 3 T33: 0.2137 T12: -0.0151 REMARK 3 T13: 0.0591 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.0562 L22: 2.8474 REMARK 3 L33: 4.1390 L12: -0.8665 REMARK 3 L13: 0.6138 L23: 0.7068 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.2617 S13: -0.2782 REMARK 3 S21: 0.1887 S22: -0.0385 S23: 0.1555 REMARK 3 S31: 0.4509 S32: -0.0218 S33: -0.0367 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4200 17.2656 35.0398 REMARK 3 T TENSOR REMARK 3 T11: 0.4590 T22: 0.3987 REMARK 3 T33: 0.3833 T12: -0.0623 REMARK 3 T13: -0.0037 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 1.5531 L22: 4.4821 REMARK 3 L33: 5.0961 L12: 0.7009 REMARK 3 L13: -0.1770 L23: -0.5638 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.1825 S13: 0.4106 REMARK 3 S21: 0.1432 S22: 0.0977 S23: -0.6268 REMARK 3 S31: -0.7379 S32: 0.5581 S33: 0.0556 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 421 THROUGH 438 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3597 17.0153 24.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.4082 T22: 0.2800 REMARK 3 T33: 0.2320 T12: -0.0644 REMARK 3 T13: 0.0356 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 6.1262 L22: 5.5058 REMARK 3 L33: 5.0645 L12: -0.2874 REMARK 3 L13: 1.5324 L23: -0.0755 REMARK 3 S TENSOR REMARK 3 S11: -0.3280 S12: 0.0678 S13: 0.2841 REMARK 3 S21: 0.3896 S22: -0.0017 S23: -0.1877 REMARK 3 S31: -0.9518 S32: 0.4185 S33: 0.1577 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 439 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8041 7.8079 23.7997 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.3394 REMARK 3 T33: 0.2203 T12: -0.0102 REMARK 3 T13: 0.0060 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.8483 L22: 4.2602 REMARK 3 L33: 3.7152 L12: 0.6015 REMARK 3 L13: 1.0176 L23: -0.2320 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.0400 S13: 0.0552 REMARK 3 S21: -0.0366 S22: -0.0852 S23: 0.1694 REMARK 3 S31: -0.1566 S32: -0.4335 S33: 0.0122 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5027 -10.9050 14.9521 REMARK 3 T TENSOR REMARK 3 T11: 0.9742 T22: 1.1091 REMARK 3 T33: 0.5219 T12: -0.0456 REMARK 3 T13: -0.0815 T23: 0.3300 REMARK 3 L TENSOR REMARK 3 L11: 1.0241 L22: 2.3960 REMARK 3 L33: 1.4342 L12: -1.5707 REMARK 3 L13: -1.2210 L23: 1.8617 REMARK 3 S TENSOR REMARK 3 S11: 0.3276 S12: -0.4605 S13: 0.0869 REMARK 3 S21: -0.8340 S22: 0.3686 S23: -0.3105 REMARK 3 S31: 0.4416 S32: 0.1892 S33: -0.2081 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 469 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4045 5.3730 19.5247 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.2684 REMARK 3 T33: 0.1695 T12: 0.0010 REMARK 3 T13: 0.0880 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 2.6594 L22: 3.6191 REMARK 3 L33: 3.1019 L12: -1.5332 REMARK 3 L13: 0.3814 L23: -0.6992 REMARK 3 S TENSOR REMARK 3 S11: -0.1659 S12: -0.1553 S13: 0.1124 REMARK 3 S21: -0.0009 S22: 0.0308 S23: 0.0232 REMARK 3 S31: 0.2008 S32: -0.1467 S33: 0.0655 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 538 THROUGH 549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2119 -7.0137 30.0597 REMARK 3 T TENSOR REMARK 3 T11: 0.6508 T22: 0.3881 REMARK 3 T33: 0.7424 T12: 0.1437 REMARK 3 T13: -0.0034 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.3789 L22: 4.4365 REMARK 3 L33: 4.2395 L12: -0.5202 REMARK 3 L13: 0.4827 L23: -0.1479 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: 0.4967 S13: -0.1334 REMARK 3 S21: 0.2993 S22: 0.2385 S23: -1.1334 REMARK 3 S31: 1.2638 S32: 0.6761 S33: 0.1424 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 687 THROUGH 697 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0517 18.9183 1.5434 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.5227 REMARK 3 T33: 0.5260 T12: -0.0397 REMARK 3 T13: -0.0488 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 4.5473 L22: 3.3456 REMARK 3 L33: 3.5180 L12: 0.0026 REMARK 3 L13: -0.2108 L23: 3.4181 REMARK 3 S TENSOR REMARK 3 S11: -0.5242 S12: 0.4285 S13: 0.5855 REMARK 3 S21: -0.7411 S22: -0.0522 S23: -0.5454 REMARK 3 S31: -0.4884 S32: 0.0034 S33: -0.0582 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 688 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8702 -13.1233 34.9033 REMARK 3 T TENSOR REMARK 3 T11: 0.6960 T22: 0.4579 REMARK 3 T33: 0.5953 T12: -0.0202 REMARK 3 T13: -0.0237 T23: 0.1342 REMARK 3 L TENSOR REMARK 3 L11: 0.0137 L22: 0.0365 REMARK 3 L33: 0.0232 L12: 0.0146 REMARK 3 L13: 0.0111 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.4208 S13: -0.6328 REMARK 3 S21: -0.0109 S22: 0.2478 S23: 0.2581 REMARK 3 S31: 0.5897 S32: -0.3065 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2B1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.40200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 ASP A 332 REMARK 465 PRO A 333 REMARK 465 THR A 460 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 GLY B 415 REMARK 465 LYS B 416 REMARK 465 THR B 460 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 HIS D 687 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 GLN A 498 CG CD OE1 NE2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 PHE B 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 ARG B 412 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 414 CG CD OE1 NE2 REMARK 470 CYS B 417 SG REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 MET B 421 CG SD CE REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 THR B 465 OG1 CG2 REMARK 470 LEU B 466 CG CD1 CD2 REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 LYS B 481 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 TYR B 526 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 529 CG CD CE NZ REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ASN B 532 CG OD1 ND2 REMARK 470 ASP B 538 CG OD1 OD2 REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 549 CG CD1 CD2 REMARK 470 SER C 697 OG REMARK 470 ARG D 692 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1071 O HOH A 1076 1.99 REMARK 500 O HOH A 1008 O HOH A 1072 2.04 REMARK 500 O HOH B 1053 O HOH B 1062 2.09 REMARK 500 OE1 GLU A 542 O HOH A 1001 2.15 REMARK 500 OE2 GLU A 523 O HOH A 1002 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 337 -41.44 -138.97 REMARK 500 VAL A 458 1.19 -67.55 REMARK 500 ASN A 532 74.59 57.62 REMARK 500 VAL A 533 -45.62 -131.59 REMARK 500 GLU B 419 -27.81 78.40 REMARK 500 LEU B 466 23.37 -171.58 REMARK 500 SER B 468 -49.60 114.95 REMARK 500 PRO B 535 89.20 -61.28 REMARK 500 GLN C 695 -94.22 -73.12 REMARK 500 ASP C 696 57.76 11.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 418 GLU B 419 120.32 REMARK 500 LEU B 466 LYS B 467 81.16 REMARK 500 LYS B 467 SER B 468 -80.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5JX A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5JX B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DXR RELATED DB: PDB REMARK 900 5DXR CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT REMARK 900 CYCLOFENIL DERIVATIVE DBREF 5DZ3 A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DZ3 B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 5DZ3 C 686 699 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 5DZ3 D 686 699 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 5DZ3 SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5DZ3 SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 5JX A 900 23 HET 5JX B 901 23 HETNAM 5JX 4,4'-{[4-(FLUOROMETHYL) HETNAM 2 5JX CYCLOHEXYLIDENE]METHANEDIYL}DIPHENOL FORMUL 5 5JX 2(C20 H21 F O2) FORMUL 7 HOH *150(H2 O) HELIX 1 AA1 SER A 305 SER A 309 5 5 HELIX 2 AA2 THR A 311 GLU A 323 1 13 HELIX 3 AA3 SER A 338 LYS A 362 1 25 HELIX 4 AA4 THR A 371 SER A 395 1 25 HELIX 5 AA5 ARG A 412 LYS A 416 1 5 HELIX 6 AA6 MET A 421 MET A 438 1 18 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 ASP A 473 ALA A 493 1 21 HELIX 9 AA9 THR A 496 ASN A 532 1 37 HELIX 10 AB1 SER A 537 ALA A 546 1 10 HELIX 11 AB2 THR B 311 GLU B 323 1 13 HELIX 12 AB3 SER B 338 LYS B 362 1 25 HELIX 13 AB4 THR B 371 SER B 395 1 25 HELIX 14 AB5 GLY B 420 ASN B 439 1 20 HELIX 15 AB6 GLN B 441 SER B 456 1 16 HELIX 16 AB7 SER B 468 ALA B 493 1 26 HELIX 17 AB8 THR B 496 LYS B 531 1 36 HELIX 18 AB9 SER B 537 ALA B 546 1 10 HELIX 19 AC1 LYS C 688 ASP C 696 1 9 HELIX 20 AC2 ILE D 689 ASP D 696 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 CISPEP 1 THR B 465 LEU B 466 0 -4.10 CISPEP 2 ARG B 548 LEU B 549 0 -0.56 SITE 1 AC1 11 MET A 343 LEU A 346 THR A 347 ALA A 350 SITE 2 AC1 11 GLU A 353 LEU A 387 ARG A 394 MET A 421 SITE 3 AC1 11 ILE A 424 PHE A 425 LEU A 525 SITE 1 AC2 13 LEU B 346 THR B 347 ALA B 350 GLU B 353 SITE 2 AC2 13 LEU B 387 ARG B 394 MET B 421 ILE B 424 SITE 3 AC2 13 LEU B 428 LEU B 525 LEU B 536 LEU B 540 SITE 4 AC2 13 HOH B1032 CRYST1 53.986 80.804 58.073 90.00 109.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018523 0.000000 0.006727 0.00000 SCALE2 0.000000 0.012376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018320 0.00000