HEADER CELL ADHESION 25-SEP-15 5DZA TITLE STREPTOCOCCUS AGALACTIAE AGI/II POLYPEPTIDE BSPA C TERMINAL DOMAIN TITLE 2 (WT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BSPA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C TERMINAL DOMAIN, UNP RESIDUES 554-881; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE SEROTYPE III (STRAIN SOURCE 3 NEM316); SOURCE 4 ORGANISM_TAXID: 211110; SOURCE 5 GENE: GBS1143; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS ADHESIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR S.REGO,M.TILL,P.R.RACE REVDAT 8 20-NOV-24 5DZA 1 REMARK REVDAT 7 12-JUN-24 5DZA 1 REMARK LINK REVDAT 6 08-MAY-24 5DZA 1 REMARK REVDAT 5 10-JUL-19 5DZA 1 REMARK REVDAT 4 20-FEB-19 5DZA 1 REMARK LINK REVDAT 3 10-AUG-16 5DZA 1 JRNL REVDAT 2 29-JUN-16 5DZA 1 JRNL REVDAT 1 22-JUN-16 5DZA 0 JRNL AUTH S.REGO,T.J.HEAL,G.R.PIDWILL,M.TILL,A.ROBSON,R.J.LAMONT, JRNL AUTH 2 R.B.SESSIONS,H.F.JENKINSON,P.R.RACE,A.H.NOBBS JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF CELL WALL-ANCHORED JRNL TITL 2 POLYPEPTIDE ADHESIN BSPA IN STREPTOCOCCUS AGALACTIAE. JRNL REF J.BIOL.CHEM. V. 291 15985 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27311712 JRNL DOI 10.1074/JBC.M116.726562 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 19496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.09000 REMARK 3 B22 (A**2) : -1.91000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2500 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2391 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3373 ; 1.800 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5512 ; 1.588 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 7.375 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;37.725 ;25.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;16.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;10.561 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2818 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 555 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1248 ; 0.775 ; 2.331 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1247 ; 0.774 ; 2.331 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1557 ; 1.106 ; 3.493 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1558 ; 1.106 ; 3.493 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1252 ; 1.006 ; 2.436 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1252 ; 0.995 ; 2.436 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1816 ; 1.493 ; 3.609 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2631 ; 1.872 ;18.264 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2632 ; 1.872 ;18.271 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 39.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 5.8.0049 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M SODIUM/POTASSIUM PHOSPHATE AND REMARK 280 20% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.90000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.90000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.29500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.01500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.90000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.29500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.01500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 102.90000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 640 REMARK 465 ASP A 641 REMARK 465 THR A 642 REMARK 465 LEU A 643 REMARK 465 ASP A 644 REMARK 465 GLN A 645 REMARK 465 LYS A 646 REMARK 465 LEU A 647 REMARK 465 GLN A 648 REMARK 465 SER A 649 REMARK 465 LEU A 650 REMARK 465 ILE A 651 REMARK 465 LYS A 652 REMARK 465 GLU A 653 REMARK 465 ALA A 654 REMARK 465 GLY A 655 REMARK 465 ILE A 656 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 639 OG REMARK 470 SER A 657 OG REMARK 470 VAL A 659 CG1 CG2 REMARK 470 ASP A 737 CG OD1 OD2 REMARK 470 LYS A 747 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 556 OD1 ASN A 703 2.06 REMARK 500 NZ LYS A 730 OD1 ASN A 861 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 0 C PRO A 554 N -0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 683 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 722 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 783 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 824 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 VAL A 878 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 613 -80.75 -129.71 REMARK 500 LEU A 638 118.98 -161.78 REMARK 500 VAL A 659 10.72 -145.19 REMARK 500 ASP A 737 35.27 38.10 REMARK 500 ASN A 743 21.62 43.16 REMARK 500 ASN A 764 34.46 73.73 REMARK 500 ASN A 868 48.11 39.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 903 DBREF 5DZA A 554 881 UNP Q8E589 Q8E589_STRA3 554 881 SEQADV 5DZA PRO A 0 UNP Q8E589 EXPRESSION TAG SEQRES 1 A 329 PRO PRO THR LYS LYS VAL LEU ASP GLU ASN GLY GLN SER SEQRES 2 A 329 ILE ASN GLY LYS SER VAL LEU PRO ASN ALA THR LEU ASP SEQRES 3 A 329 TYR VAL ALA LYS GLN ASN PHE SER GLN TYR LYS GLY ILE SEQRES 4 A 329 LYS ALA SER ALA GLU ALA ILE ALA LYS GLY PHE ALA PHE SEQRES 5 A 329 VAL ASP GLN PRO ASN GLU ALA LEU ALA GLU LEU THR VAL SEQRES 6 A 329 LYS SER ILE LYS ALA SER ASN GLY ASP ASP VAL SER SER SEQRES 7 A 329 LEU LEU GLU MET ARG HIS VAL LEU SER LYS ASP THR LEU SEQRES 8 A 329 ASP GLN LYS LEU GLN SER LEU ILE LYS GLU ALA GLY ILE SEQRES 9 A 329 SER PRO VAL GLY GLU PHE TYR MET TRP THR ALA LYS ASP SEQRES 10 A 329 PRO GLN ALA PHE TYR LYS ALA TYR VAL GLN LYS GLY LEU SEQRES 11 A 329 ASP ILE THR TYR ASN LEU SER PHE LYS VAL LYS LYS GLU SEQRES 12 A 329 PHE THR LYS GLY GLN ILE LYS ASN GLY VAL ALA GLN ILE SEQRES 13 A 329 ASP PHE GLY ASN GLY TYR THR GLY ASN ILE VAL VAL ASN SEQRES 14 A 329 ASP LEU THR THR PRO GLU VAL HIS LYS ASP VAL LEU ASP SEQRES 15 A 329 LYS GLU ASP GLY LYS SER ILE ASN ASN GLY THR VAL LYS SEQRES 16 A 329 LEU GLY ASP GLU VAL THR TYR LYS LEU GLU GLY TRP VAL SEQRES 17 A 329 VAL PRO ALA ASN ARG GLY TYR ASP LEU PHE GLU TYR LYS SEQRES 18 A 329 PHE VAL ASP HIS LEU GLN HIS THR HIS ASP LEU TYR LEU SEQRES 19 A 329 LYS ASP LYS VAL VAL ALA LYS VAL ALA ILE THR LEU LYS SEQRES 20 A 329 ASP GLY THR VAL ILE PRO LYS GLY THR ASN LEU VAL GLN SEQRES 21 A 329 TYR THR GLU THR VAL TYR ASN LYS GLU THR GLY ARG TYR SEQRES 22 A 329 GLU LEU ALA PHE LYS ALA ASP PHE LEU ALA GLN VAL SER SEQRES 23 A 329 ARG SER SER ALA PHE GLY ALA ASP ASP PHE ILE VAL VAL SEQRES 24 A 329 LYS ARG ILE LYS ALA GLY ASP VAL TYR ASN THR ALA ASP SEQRES 25 A 329 PHE PHE VAL ASN GLY ASN LYS VAL LYS THR GLU THR VAL SEQRES 26 A 329 VAL THR HIS THR HET EDO A 901 4 HET EDO A 902 4 HET PEG A 903 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *53(H2 O) HELIX 1 AA1 PHE A 585 LYS A 589 5 5 HELIX 2 AA2 SER A 594 ALA A 599 1 6 HELIX 3 AA3 VAL A 628 SER A 630 5 3 HELIX 4 AA4 ASP A 669 TYR A 677 1 9 HELIX 5 AA5 LEU A 810 GLN A 812 5 3 HELIX 6 AA6 LYS A 830 ALA A 835 1 6 SHEET 1 AA1 4 THR A 555 LEU A 559 0 SHEET 2 AA1 4 THR A 576 GLN A 583 -1 O LYS A 582 N THR A 555 SHEET 3 AA1 4 ILE A 684 LYS A 691 -1 O TYR A 686 N ALA A 581 SHEET 4 AA1 4 THR A 616 ALA A 622 -1 N LYS A 621 O THR A 685 SHEET 1 AA2 5 LEU A 632 LEU A 638 0 SHEET 2 AA2 5 GLU A 661 ALA A 667 -1 O PHE A 662 N VAL A 637 SHEET 3 AA2 5 PHE A 602 PRO A 608 -1 N ASP A 606 O TYR A 663 SHEET 4 AA2 5 LYS A 698 ASP A 709 -1 O GLY A 704 N GLN A 607 SHEET 5 AA2 5 ASN A 712 THR A 724 -1 O ASN A 721 N ILE A 701 SHEET 1 AA3 4 HIS A 729 LEU A 733 0 SHEET 2 AA3 4 GLU A 751 GLU A 757 -1 O GLU A 757 N HIS A 729 SHEET 3 AA3 4 ALA A 845 ARG A 853 -1 O ILE A 849 N TYR A 754 SHEET 4 AA3 4 ASP A 783 ALA A 792 -1 N LYS A 787 O VAL A 850 SHEET 1 AA4 5 THR A 814 TYR A 818 0 SHEET 2 AA4 5 ARG A 824 PHE A 829 -1 O GLU A 826 N VAL A 817 SHEET 3 AA4 5 TYR A 772 HIS A 777 -1 N ASP A 776 O TYR A 825 SHEET 4 AA4 5 ALA A 863 VAL A 867 -1 O PHE A 866 N LYS A 773 SHEET 5 AA4 5 ASN A 870 LYS A 873 -1 O VAL A 872 N PHE A 865 SHEET 1 AA5 2 ILE A 796 THR A 797 0 SHEET 2 AA5 2 VAL A 803 ILE A 804 -1 O ILE A 804 N ILE A 796 SHEET 1 AA6 2 GLY A 857 ASN A 861 0 SHEET 2 AA6 2 VAL A 877 THR A 881 -1 O THR A 879 N VAL A 859 LINK NZ LYS A 556 CG ASN A 703 1555 1555 1.32 LINK NZ LYS A 730 CG ASN A 861 1555 1555 1.28 SITE 1 AC1 2 THR A 576 GLY A 766 SITE 1 AC2 5 GLU A 561 TYR A 767 ASP A 768 ARG A 839 SITE 2 AC2 5 PEG A 903 SITE 1 AC3 5 VAL A 571 LEU A 572 ASN A 574 TYR A 767 SITE 2 AC3 5 EDO A 902 CRYST1 34.030 205.800 120.590 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029386 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008293 0.00000