HEADER HYDROLASE 25-SEP-15 5DZE TITLE CRYSTAL STRUCTURE OF THE CATALYTIC NUCLEOPHILE MUTANT OF VVEG16 IN TITLE 2 COMPLEX WITH CELLOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-GLUCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ENDO-GLUCANASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITIS VINIFERA; SOURCE 3 ORGANISM_COMMON: GRAPE; SOURCE 4 ORGANISM_TAXID: 29760; SOURCE 5 GENE: VIT_15S0048G01850; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) HI-CONTROL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS CELL WALL, DIETARY FIBER, MIXED-LINKAGE GLUCAN, XYLOGLUCAN, BETA- KEYWDS 2 GLUCAN, GLYCOSIDE HYDROLASE, ENDO-GLUCANASE, GRAPES, PLANTS, PROTEIN KEYWDS 3 STRUCTURE, GH16, BETA-JELLY ROLL, PHYLOGENY, OLIGOSACCHARIDE, KEYWDS 4 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.G.S.MCGREGOR,C.C.TUNG,F.VAN PETEGEM,H.BRUMER REVDAT 3 29-JUL-20 5DZE 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 01-NOV-17 5DZE 1 JRNL REMARK REVDAT 1 21-SEP-16 5DZE 0 JRNL AUTH N.MCGREGOR,V.YIN,C.C.TUNG,F.VAN PETEGEM,H.BRUMER JRNL TITL CRYSTALLOGRAPHIC INSIGHT INTO THE EVOLUTIONARY ORIGINS OF JRNL TITL 2 XYLOGLUCAN ENDOTRANSGLYCOSYLASES AND ENDOHYDROLASES. JRNL REF PLANT J. V. 89 651 2017 JRNL REFN ESSN 1365-313X JRNL PMID 27859885 JRNL DOI 10.1111/TPJ.13421 REMARK 2 REMARK 2 RESOLUTION. 0.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 212660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 10613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1328 - 3.0137 1.00 7080 382 0.1317 0.1329 REMARK 3 2 3.0137 - 2.3921 1.00 7097 362 0.1241 0.1480 REMARK 3 3 2.3921 - 2.0897 1.00 7078 376 0.1034 0.1097 REMARK 3 4 2.0897 - 1.8987 1.00 7086 374 0.0912 0.1072 REMARK 3 5 1.8987 - 1.7626 1.00 7085 376 0.0899 0.1002 REMARK 3 6 1.7626 - 1.6587 1.00 7025 370 0.0843 0.1105 REMARK 3 7 1.6587 - 1.5756 0.99 7041 372 0.0796 0.0958 REMARK 3 8 1.5756 - 1.5070 0.99 7066 376 0.0843 0.0970 REMARK 3 9 1.5070 - 1.4490 0.99 7012 373 0.0878 0.1161 REMARK 3 10 1.4490 - 1.3990 1.00 7068 379 0.0891 0.1070 REMARK 3 11 1.3990 - 1.3552 1.00 7115 367 0.0919 0.1257 REMARK 3 12 1.3552 - 1.3165 1.00 7046 367 0.0977 0.1207 REMARK 3 13 1.3165 - 1.2818 1.00 7079 368 0.1002 0.1205 REMARK 3 14 1.2818 - 1.2506 1.00 7067 371 0.1046 0.1270 REMARK 3 15 1.2506 - 1.2221 1.00 7064 374 0.1088 0.1267 REMARK 3 16 1.2221 - 1.1961 1.00 7083 377 0.1106 0.1228 REMARK 3 17 1.1961 - 1.1722 1.00 7065 371 0.1122 0.1300 REMARK 3 18 1.1722 - 1.1501 1.00 7058 367 0.1174 0.1439 REMARK 3 19 1.1501 - 1.1295 1.00 7046 368 0.1225 0.1407 REMARK 3 20 1.1295 - 1.1104 1.00 7070 376 0.1412 0.1393 REMARK 3 21 1.1104 - 1.0925 1.00 7110 376 0.1543 0.1678 REMARK 3 22 1.0925 - 1.0757 1.00 7036 375 0.1633 0.1709 REMARK 3 23 1.0757 - 1.0598 1.00 7122 374 0.1840 0.1914 REMARK 3 24 1.0598 - 1.0449 0.99 7053 365 0.2071 0.2348 REMARK 3 25 1.0449 - 1.0308 0.94 6589 342 0.2262 0.2366 REMARK 3 26 1.0308 - 1.0174 0.87 6194 320 0.2665 0.2879 REMARK 3 27 1.0174 - 1.0047 0.80 5690 299 0.3014 0.2806 REMARK 3 28 1.0047 - 0.9926 0.74 5239 263 0.3449 0.3710 REMARK 3 29 0.9926 - 0.9810 0.65 4568 239 0.3504 0.3663 REMARK 3 30 0.9810 - 0.9700 0.57 4115 214 0.3870 0.4164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1866 REMARK 3 ANGLE : 1.624 2586 REMARK 3 CHIRALITY : 0.230 289 REMARK 3 PLANARITY : 0.009 336 REMARK 3 DIHEDRAL : 12.652 668 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000210708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR: ULTRA REMARK 200 -LOW EXPANSION (ULE) TITANIUM REMARK 200 SILICATE FLAT MIRROR WITH PT, REMARK 200 UNCOATED, AND PD STRIPS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS JANUARY 10, 2014, XSCALE REMARK 200 JANUARY 10, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111789 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.970 REMARK 200 RESOLUTION RANGE LOW (A) : 44.087 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.90500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM DTT, 2 MM CELLOTETRAOSE, 1 MM REMARK 280 EDTA, 1.2 M K2HPO4, 0.8 M NAH2PO4, PH 6.9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 LYS A 15 CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 85 CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLN A 161 CD OE1 NE2 REMARK 470 GLU A 178 CD OE1 OE2 REMARK 470 GLU A 208 C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 63 O HOH A 405 1.53 REMARK 500 O ASP A 40 H ARG A 42 1.58 REMARK 500 O HOH A 616 O HOH A 638 2.03 REMARK 500 O ASP A 40 N ARG A 42 2.05 REMARK 500 NE2 GLN A 12 O HOH A 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 24 O HOH A 557 1655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 64 CA - CB - SG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 -152.50 -155.29 REMARK 500 HIS A 41 -22.56 -17.62 REMARK 500 TYR A 55 169.17 74.19 REMARK 500 LEU A 81 116.35 -175.40 REMARK 500 ASP A 155 21.54 -153.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 91 PHE A 92 149.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 653 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 654 DISTANCE = 6.54 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DZG RELATED DB: PDB REMARK 900 RELATED ID: 5DZF RELATED DB: PDB DBREF 5DZE A 2 208 UNP F6I323 F6I323_VITVI 1 208 SEQADV 5DZE ALA A 89 UNP F6I323 GLU 88 ENGINEERED MUTATION SEQADV 5DZE A UNP F6I323 VAL 151 DELETION SEQRES 1 A 207 MET ALA ASP PRO SER LEU HIS HIS GLU ALA GLN PRO LEU SEQRES 2 A 207 LYS PHE ILE ALA VAL ASP TYR CYS PRO GLU SER CYS THR SEQRES 3 A 207 HIS SER PRO GLU SER SER THR ILE THR LEU THR PHE ASP SEQRES 4 A 207 HIS ARG GLY GLY SER ARG TRP ARG SER THR THR ARG PHE SEQRES 5 A 207 GLN TYR GLY THR PHE SER SER LEU ILE GLN CYS PRO LYS SEQRES 6 A 207 GLY ASN THR SER GLY LEU ASN PHE ASN ILE TYR LEU SER SEQRES 7 A 207 SER LEU GLU GLY ASP LYS SER GLN ASP ALA ILE ASP PHE SEQRES 8 A 207 GLU PHE LEU GLY LYS ASP LYS ARG ILE VAL GLN THR ASN SEQRES 9 A 207 TYR TYR THR ALA GLY THR GLY ASN ARG GLU ALA ILE HIS SEQRES 10 A 207 ASP LEU GLY PHE ASP CYS SER ASP GLY PHE HIS GLU TYR SEQRES 11 A 207 VAL ILE LYS TRP GLY PRO ASP LEU ILE GLN TRP LEU ILE SEQRES 12 A 207 ASP GLY LYS VAL ILE ARG SER VAL ARG ALA ASP GLY GLU SEQRES 13 A 207 GLY PHE PRO GLN LYS PRO MET PHE LEU TYR ALA SER VAL SEQRES 14 A 207 TRP ASP ALA SER TYR ILE ASP GLU GLY ARG TRP THR GLY SEQRES 15 A 207 PRO TYR VAL GLY CYS ASP ALA PRO TYR ILE CYS LEU TYR SEQRES 16 A 207 LYS ASN VAL ASN VAL PRO VAL GLY THR ALA VAL GLU HET GLC B 1 24 HET BGC B 2 22 HET BGC B 3 22 HET BGC B 4 22 HET BGC A 305 24 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE FORMUL 2 GLC C6 H12 O6 FORMUL 2 BGC 4(C6 H12 O6) FORMUL 4 HOH *254(H2 O) HELIX 1 AA1 CYS A 22 GLU A 24 5 3 HELIX 2 AA2 PRO A 30 SER A 32 5 3 HELIX 3 AA3 TYR A 175 ARG A 180 5 6 SHEET 1 AA1 4 ALA A 11 PRO A 13 0 SHEET 2 AA1 4 TYR A 192 PRO A 202 -1 O VAL A 201 N GLN A 12 SHEET 3 AA1 4 THR A 34 PHE A 39 -1 N ILE A 35 O TYR A 196 SHEET 4 AA1 4 CYS A 26 SER A 29 -1 N SER A 29 O THR A 34 SHEET 1 AA2 6 ALA A 11 PRO A 13 0 SHEET 2 AA2 6 TYR A 192 PRO A 202 -1 O VAL A 201 N GLN A 12 SHEET 3 AA2 6 GLY A 56 GLN A 63 -1 N LEU A 61 O LYS A 197 SHEET 4 AA2 6 HIS A 129 TRP A 135 -1 O TRP A 135 N GLY A 56 SHEET 5 AA2 6 LEU A 139 ILE A 144 -1 O GLN A 141 N LYS A 134 SHEET 6 AA2 6 LYS A 147 ARG A 153 -1 O ILE A 149 N TRP A 142 SHEET 1 AA3 7 ILE A 17 TYR A 21 0 SHEET 2 AA3 7 SER A 45 SER A 49 -1 O ARG A 48 N ALA A 18 SHEET 3 AA3 7 PHE A 165 ASP A 172 -1 O LEU A 166 N SER A 49 SHEET 4 AA3 7 LEU A 72 SER A 79 -1 N TYR A 77 O TYR A 167 SHEET 5 AA3 7 ALA A 89 LEU A 95 -1 O PHE A 94 N PHE A 74 SHEET 6 AA3 7 ILE A 101 TYR A 107 -1 O GLN A 103 N GLU A 93 SHEET 7 AA3 7 ALA A 116 ASP A 119 -1 O HIS A 118 N VAL A 102 SSBOND 1 CYS A 64 CYS A 124 1555 1555 2.11 LINK O4 GLC B 1 C1 BGC B 2 1555 1555 1.38 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.38 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.39 CISPEP 1 ALA A 190 PRO A 191 0 0.25 CRYST1 45.150 52.020 83.060 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012039 0.00000