HEADER HYDROLASE 25-SEP-15 5DZF TITLE CRYSTAL STRUCTURE OF THE CATALYTIC NUCLEOPHILE MUTANT OF VVEG16 IN TITLE 2 COMPLEX WITH A MIXED-LINKAGE GLUCAN OCTASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ENDO-GLUCANASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITIS VINIFERA; SOURCE 3 ORGANISM_COMMON: GRAPE; SOURCE 4 ORGANISM_TAXID: 29760; SOURCE 5 GENE: VIT_15S0048G01850; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) HI-CONTROL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS CELL WALL, DIETARY FIBER, MIXED-LINKAGE GLUCAN, XYLOGLUCAN, BETA- KEYWDS 2 GLUCAN, GLYCOSIDE HYDROLASE, ENDO-GLUCANASE, GRAPES, PLANTS, PROTEIN KEYWDS 3 STRUCTURE, GH16, BETA-JELLY ROLL, PHYLOGENY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.G.S.MCGREGOR,C.C.TUNG,F.VAN PETEGEM,H.BRUMER REVDAT 4 27-SEP-23 5DZF 1 HETSYN LINK REVDAT 3 29-JUL-20 5DZF 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 01-NOV-17 5DZF 1 JRNL REMARK REVDAT 1 21-SEP-16 5DZF 0 JRNL AUTH N.MCGREGOR,V.YIN,C.C.TUNG,F.VAN PETEGEM,H.BRUMER JRNL TITL CRYSTALLOGRAPHIC INSIGHT INTO THE EVOLUTIONARY ORIGINS OF JRNL TITL 2 XYLOGLUCAN ENDOTRANSGLYCOSYLASES AND ENDOHYDROLASES. JRNL REF PLANT J. V. 89 651 2017 JRNL REFN ESSN 1365-313X JRNL PMID 27859885 JRNL DOI 10.1111/TPJ.13421 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2558 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 161 REMARK 3 SOLVENT ATOMS : 447 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000210705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8266 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR: ULTRA REMARK 200 -LOW EXPANSION (ULE) TITANIUM REMARK 200 SILICATE FLAT MIRROR WITH PT, REMARK 200 UNCOATED, AND PD STRIPS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS JANUARY 10, 2014, XSCALE REMARK 200 JANUARY 10, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.974 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.20500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 1UMZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM DTT, 5 MM G3GGG3GGG, 0.5 MM REMARK 280 GG3GGG3GGG, 1 MM EDTA, 0.1 M HEPES, 1.6 M (NH4)2SO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.64000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.16500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.96000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.16500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.32000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.16500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.96000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.16500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.32000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 542 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 520 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 9 REMARK 465 GLY B 1 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 PRO B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 GLU B 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 2 CG SD CE REMARK 470 HIS A 8 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 LYS A 15 CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLU A 208 CA C O CB CG CD OE1 REMARK 470 GLU A 208 OE2 REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LYS B 85 CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 470 GLU B 178 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 404 O HOH B 543 2.14 REMARK 500 O HOH B 417 O HOH B 579 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 204 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 -159.96 -161.19 REMARK 500 TYR A 55 166.98 72.90 REMARK 500 LEU A 81 116.45 -173.04 REMARK 500 ASP A 138 15.56 -143.17 REMARK 500 ASP B 40 -162.40 -167.36 REMARK 500 TYR B 55 170.55 72.95 REMARK 500 LEU B 81 109.93 -174.38 REMARK 500 ASP B 155 -157.70 -132.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 91 PHE A 92 149.32 REMARK 500 VAL A 203 GLY A 204 138.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 203 16.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DZG RELATED DB: PDB REMARK 900 RELATED ID: 5DZE RELATED DB: PDB DBREF 5DZF A 2 208 UNP F6I323 F6I323_VITVI 1 208 DBREF 5DZF B 2 208 UNP F6I323 F6I323_VITVI 1 208 SEQADV 5DZF GLY A 1 UNP F6I323 EXPRESSION TAG SEQADV 5DZF ALA A 89 UNP F6I323 GLU 88 ENGINEERED MUTATION SEQADV 5DZF A UNP F6I323 VAL 151 DELETION SEQADV 5DZF GLY B 1 UNP F6I323 EXPRESSION TAG SEQADV 5DZF ALA B 89 UNP F6I323 GLU 88 ENGINEERED MUTATION SEQADV 5DZF B UNP F6I323 VAL 151 DELETION SEQRES 1 A 208 GLY MET ALA ASP PRO SER LEU HIS HIS GLU ALA GLN PRO SEQRES 2 A 208 LEU LYS PHE ILE ALA VAL ASP TYR CYS PRO GLU SER CYS SEQRES 3 A 208 THR HIS SER PRO GLU SER SER THR ILE THR LEU THR PHE SEQRES 4 A 208 ASP HIS ARG GLY GLY SER ARG TRP ARG SER THR THR ARG SEQRES 5 A 208 PHE GLN TYR GLY THR PHE SER SER LEU ILE GLN CYS PRO SEQRES 6 A 208 LYS GLY ASN THR SER GLY LEU ASN PHE ASN ILE TYR LEU SEQRES 7 A 208 SER SER LEU GLU GLY ASP LYS SER GLN ASP ALA ILE ASP SEQRES 8 A 208 PHE GLU PHE LEU GLY LYS ASP LYS ARG ILE VAL GLN THR SEQRES 9 A 208 ASN TYR TYR THR ALA GLY THR GLY ASN ARG GLU ALA ILE SEQRES 10 A 208 HIS ASP LEU GLY PHE ASP CYS SER ASP GLY PHE HIS GLU SEQRES 11 A 208 TYR VAL ILE LYS TRP GLY PRO ASP LEU ILE GLN TRP LEU SEQRES 12 A 208 ILE ASP GLY LYS VAL ILE ARG SER VAL ARG ALA ASP GLY SEQRES 13 A 208 GLU GLY PHE PRO GLN LYS PRO MET PHE LEU TYR ALA SER SEQRES 14 A 208 VAL TRP ASP ALA SER TYR ILE ASP GLU GLY ARG TRP THR SEQRES 15 A 208 GLY PRO TYR VAL GLY CYS ASP ALA PRO TYR ILE CYS LEU SEQRES 16 A 208 TYR LYS ASN VAL ASN VAL PRO VAL GLY THR ALA VAL GLU SEQRES 1 B 208 GLY MET ALA ASP PRO SER LEU HIS HIS GLU ALA GLN PRO SEQRES 2 B 208 LEU LYS PHE ILE ALA VAL ASP TYR CYS PRO GLU SER CYS SEQRES 3 B 208 THR HIS SER PRO GLU SER SER THR ILE THR LEU THR PHE SEQRES 4 B 208 ASP HIS ARG GLY GLY SER ARG TRP ARG SER THR THR ARG SEQRES 5 B 208 PHE GLN TYR GLY THR PHE SER SER LEU ILE GLN CYS PRO SEQRES 6 B 208 LYS GLY ASN THR SER GLY LEU ASN PHE ASN ILE TYR LEU SEQRES 7 B 208 SER SER LEU GLU GLY ASP LYS SER GLN ASP ALA ILE ASP SEQRES 8 B 208 PHE GLU PHE LEU GLY LYS ASP LYS ARG ILE VAL GLN THR SEQRES 9 B 208 ASN TYR TYR THR ALA GLY THR GLY ASN ARG GLU ALA ILE SEQRES 10 B 208 HIS ASP LEU GLY PHE ASP CYS SER ASP GLY PHE HIS GLU SEQRES 11 B 208 TYR VAL ILE LYS TRP GLY PRO ASP LEU ILE GLN TRP LEU SEQRES 12 B 208 ILE ASP GLY LYS VAL ILE ARG SER VAL ARG ALA ASP GLY SEQRES 13 B 208 GLU GLY PHE PRO GLN LYS PRO MET PHE LEU TYR ALA SER SEQRES 14 B 208 VAL TRP ASP ALA SER TYR ILE ASP GLU GLY ARG TRP THR SEQRES 15 B 208 GLY PRO TYR VAL GLY CYS ASP ALA PRO TYR ILE CYS LEU SEQRES 16 B 208 TYR LYS ASN VAL ASN VAL PRO VAL GLY THR ALA VAL GLU HET GLC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET GLC D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET BGC D 5 11 HET BGC D 6 11 HET BGC D 7 11 HET BGC D 8 11 HET SO4 A 305 5 HET SO4 A 306 5 HET BGC B 309 12 HET SO4 B 310 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 BGC 11(C6 H12 O6) FORMUL 5 SO4 3(O4 S 2-) FORMUL 9 HOH *447(H2 O) HELIX 1 AA1 CYS A 22 GLU A 24 5 3 HELIX 2 AA2 PRO A 30 SER A 32 5 3 HELIX 3 AA3 TYR A 175 ARG A 180 5 6 HELIX 4 AA4 CYS B 22 GLU B 24 5 3 HELIX 5 AA5 PRO B 30 SER B 32 5 3 HELIX 6 AA6 TYR B 175 ARG B 180 5 6 SHEET 1 AA1 4 ALA A 11 PRO A 13 0 SHEET 2 AA1 4 TYR A 192 PRO A 202 -1 O VAL A 201 N GLN A 12 SHEET 3 AA1 4 THR A 34 PHE A 39 -1 N LEU A 37 O CYS A 194 SHEET 4 AA1 4 CYS A 26 SER A 29 -1 N SER A 29 O THR A 34 SHEET 1 AA2 6 ALA A 11 PRO A 13 0 SHEET 2 AA2 6 TYR A 192 PRO A 202 -1 O VAL A 201 N GLN A 12 SHEET 3 AA2 6 GLY A 56 GLN A 63 -1 N LEU A 61 O LYS A 197 SHEET 4 AA2 6 HIS A 129 TRP A 135 -1 O HIS A 129 N ILE A 62 SHEET 5 AA2 6 LEU A 139 ILE A 144 -1 O GLN A 141 N LYS A 134 SHEET 6 AA2 6 LYS A 147 ARG A 153 -1 O ILE A 149 N TRP A 142 SHEET 1 AA3 7 ILE A 17 TYR A 21 0 SHEET 2 AA3 7 SER A 45 SER A 49 -1 O ARG A 48 N ALA A 18 SHEET 3 AA3 7 PHE A 165 ASP A 172 -1 O ALA A 168 N TRP A 47 SHEET 4 AA3 7 LEU A 72 SER A 79 -1 N TYR A 77 O TYR A 167 SHEET 5 AA3 7 ALA A 89 LEU A 95 -1 O PHE A 94 N PHE A 74 SHEET 6 AA3 7 ILE A 101 TYR A 107 -1 O GLN A 103 N GLU A 93 SHEET 7 AA3 7 ALA A 116 ASP A 119 -1 O HIS A 118 N VAL A 102 SHEET 1 AA4 2 ARG A 52 PHE A 53 0 SHEET 2 AA4 2 ALA A 206 VAL A 207 -1 O VAL A 207 N ARG A 52 SHEET 1 AA5 4 ALA B 11 PRO B 13 0 SHEET 2 AA5 4 TYR B 192 PRO B 202 -1 O VAL B 201 N GLN B 12 SHEET 3 AA5 4 THR B 34 PHE B 39 -1 N LEU B 37 O CYS B 194 SHEET 4 AA5 4 CYS B 26 SER B 29 -1 N SER B 29 O THR B 34 SHEET 1 AA6 6 ALA B 11 PRO B 13 0 SHEET 2 AA6 6 TYR B 192 PRO B 202 -1 O VAL B 201 N GLN B 12 SHEET 3 AA6 6 GLY B 56 GLN B 63 -1 N LEU B 61 O LYS B 197 SHEET 4 AA6 6 HIS B 129 TRP B 135 -1 O TRP B 135 N GLY B 56 SHEET 5 AA6 6 LEU B 139 ILE B 144 -1 O GLN B 141 N LYS B 134 SHEET 6 AA6 6 LYS B 147 ARG B 153 -1 O ILE B 149 N TRP B 142 SHEET 1 AA7 7 ILE B 17 TYR B 21 0 SHEET 2 AA7 7 SER B 45 SER B 49 -1 O ARG B 48 N ALA B 18 SHEET 3 AA7 7 PHE B 165 ASP B 172 -1 O ALA B 168 N TRP B 47 SHEET 4 AA7 7 LEU B 72 SER B 79 -1 N TYR B 77 O TYR B 167 SHEET 5 AA7 7 ALA B 89 LEU B 95 -1 O PHE B 94 N PHE B 74 SHEET 6 AA7 7 ILE B 101 TYR B 107 -1 O GLN B 103 N GLU B 93 SHEET 7 AA7 7 ALA B 116 ASP B 119 -1 O HIS B 118 N VAL B 102 SHEET 1 AA8 2 ARG B 52 PHE B 53 0 SHEET 2 AA8 2 ALA B 206 VAL B 207 -1 O VAL B 207 N ARG B 52 SSBOND 1 CYS A 188 CYS B 188 1555 4445 2.02 LINK NH1BARG B 100 O1 SO4 B 310 1555 1555 1.31 LINK O4 GLC C 1 C1 BGC C 2 1555 1555 1.29 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.42 LINK O3 BGC C 3 C1 BGC C 4 1555 1555 1.42 LINK O4 GLC D 1 C1 BGC D 2 1555 1555 1.31 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.42 LINK O3 BGC D 3 C1 BGC D 4 1555 1555 1.41 LINK O4 BGC D 4 C1 BGC D 5 1555 1555 1.43 LINK O4 BGC D 5 C1 BGC D 6 1555 1555 1.41 LINK O3 BGC D 6 C1 BGC D 7 1555 1555 1.42 LINK O4 BGC D 7 C1 BGC D 8 1555 1555 1.41 CISPEP 1 ALA A 190 PRO A 191 0 1.03 CISPEP 2 ALA B 190 PRO B 191 0 -1.21 CRYST1 74.330 74.330 149.280 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006699 0.00000